genome.fa.s6171.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006171.1 Hibiscus syriacus cultivar Beakdansim tig00014660_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115224

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132--195	26	2.4	26	82	10	67	26	23	20	29	1.99
5676--5725	21	2.4	21	93	0	82	26	24	26	24	2.00
5957--6724	387	2.0	386	86	7	1078	28	15	18	37	1.92
6724--6854	18	6.9	18	68	19	72	48	5	3	43	1.41
6748--6918	13	12.8	13	65	19	59	46	5	5	42	1.50
6781--6865	18	4.6	18	77	14	75	49	4	2	43	1.36
6893--6935	22	2.0	22	81	9	52	51	4	6	37	1.50
7158--7222	7	9.4	7	77	3	60	23	0	29	47	1.52
7588--7622	14	2.6	13	91	8	61	54	0	2	42	1.15
8046--8076	2	16.0	2	93	6	55	48	0	0	51	1.00
8580--8627	24	2.0	24	84	4	62	35	6	2	56	1.36
8689--8735	14	3.7	14	71	26	50	51	4	0	44	1.21
8687--8736	23	2.1	24	96	3	93	48	4	0	48	1.20
8776--8856	29	2.8	28	71	15	76	45	2	2	49	1.28
8983--9031	16	3.2	15	88	8	73	38	14	22	24	1.91
9644--9729	15	5.5	15	73	9	66	46	18	31	3	1.66
13017--13079	32	2.0	32	96	0	117	49	4	6	39	1.49
15046--15087	17	2.4	18	88	4	59	19	16	33	30	1.94
16464--16621	20	7.9	20	84	2	183	36	20	20	22	1.95
16464--16642	40	4.5	40	83	4	209	35	20	20	24	1.96
16616--16686	20	3.5	20	80	3	81	25	18	19	36	1.94
16464--16621	60	2.6	60	86	4	228	36	20	20	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17552--17605	24	2.2	24	90	0	81	24	14	18	42	1.88
20081--20144	14	4.2	14	74	18	56	43	20	23	12	1.85
20174--20214	19	2.2	19	100	0	82	9	14	24	51	1.72
20184--20277	33	2.8	33	87	3	127	13	20	20	45	1.84
20384--20420	14	2.6	14	91	0	65	45	21	0	32	1.52
21758--21824	21	3.2	21	68	4	55	19	20	35	23	1.95
21758--21880	42	2.9	41	79	7	113	22	18	36	21	1.95
24084--24174	20	4.6	20	82	9	114	12	17	19	50	1.77
24736--24880	20	7.3	20	78	12	131	20	17	24	37	1.94
24734--24880	40	3.7	40	85	2	181	20	18	24	36	1.94
24831--24894	20	3.2	20	90	2	74	23	20	26	29	1.99
24877--24922	21	2.2	21	92	0	74	39	17	26	17	1.91
26434--26545	35	3.2	34	84	5	134	41	21	0	36	1.60
27876--27987	35	3.2	35	87	0	152	35	0	22	41	1.60
31399--31489	21	4.4	21	76	5	87	23	20	24	31	1.98
31890--31980	19	4.4	20	76	17	105	30	28	5	35	1.80
31901--31982	44	1.9	41	87	7	119	32	29	6	31	1.82
32294--32346	16	3.2	16	94	2	88	33	13	16	35	1.88
32712--32743	14	2.3	14	94	0	55	53	0	9	37	1.34
39403--39429	4	6.8	4	100	0	54	77	0	0	22	0.76
41202--41279	14	5.4	14	77	17	88	61	2	2	33	1.23
41204--41287	29	2.9	29	100	0	168	61	3	3	30	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41807--41962	43	3.4	43	67	13	132	21	18	25	34	1.96
41784--42454	98	6.9	98	97	0	1233	22	19	23	34	1.97
42097--42256	43	3.4	43	65	18	113	21	20	24	34	1.97
41674--42454	294	2.7	290	93	2	1319	22	19	24	34	1.97
42293--42452	43	3.4	43	67	18	122	22	19	23	35	1.96
46946--47030	20	4.1	20	72	13	64	16	25	35	22	1.95
63293--63357	4	15.8	4	73	9	51	67	3	6	23	1.27
65018--65068	22	2.3	22	100	0	102	19	23	25	31	1.98
65124--65201	14	5.4	14	77	17	88	61	2	2	33	1.23
65126--65209	29	2.9	29	100	0	168	61	3	3	30	1.30
71919--71953	13	2.8	13	91	4	54	5	20	8	65	1.40
75764--75806	21	2.0	22	90	4	70	46	0	0	53	1.00
75921--75988	33	2.1	32	89	8	102	47	7	0	45	1.31
76036--76103	29	2.4	28	80	2	73	41	10	2	45	1.53
75858--76204	30	11.7	29	67	15	140	38	6	2	52	1.41
75866--76204	60	5.7	61	70	15	167	38	7	2	52	1.42
76129--76199	32	2.3	31	92	4	117	43	4	0	52	1.20
76280--76391	28	4.0	28	73	11	77	51	1	8	38	1.42
76297--76454	57	2.9	55	77	14	141	51	1	6	39	1.38
76391--76430	19	2.2	19	90	4	64	55	2	0	42	1.13
88180--88648	234	2.0	232	97	2	879	41	15	19	23	1.90
90901--90936	17	2.1	17	89	0	54	25	0	27	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104322--104364	18	2.3	18	88	4	59	46	16	30	6	1.73
105354--105443	24	3.7	24	72	22	71	60	5	0	34	1.20
105338--105432	43	2.2	44	86	5	131	60	6	0	33	1.22
105332--105404	19	3.6	19	70	25	60	58	6	0	34	1.24
105624--105671	14	3.7	14	73	21	59	14	14	14	56	1.68
105606--105670	24	2.6	24	87	4	85	15	15	13	55	1.70
106503--106529	13	2.1	13	100	0	54	22	22	14	40	1.90

Tables:   1

The End!