genome.fa.s6172.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006172.1 Hibiscus syriacus cultivar Beakdansim tig00014673_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90451

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6531--6581	20	2.5	20	81	6	59	13	13	33	39	1.84
6947--7481	257	2.1	257	86	7	739	34	14	16	34	1.89
17560--17847	83	3.5	80	69	7	197	31	17	18	32	1.94
34797--34880	42	2.0	42	81	4	98	34	9	27	28	1.88
38536--38576	12	3.5	12	78	15	50	78	0	21	0	0.76
41303--42265	261	3.7	259	90	1	1405	33	16	16	32	1.92
42412--42501	38	2.4	38	90	0	135	27	13	15	43	1.84
43058--43100	12	3.6	12	93	0	68	27	2	9	60	1.40
43146--43181	17	2.1	17	89	0	54	22	38	22	16	1.93
44404--44471	28	2.4	28	80	11	77	30	2	1	64	1.17
46087--46124	20	1.9	20	88	0	58	21	2	5	71	1.19
47106--47141	18	2.1	18	90	10	58	41	41	0	16	1.48
48453--48510	29	2.0	29	96	0	107	24	25	6	43	1.79
52158--52189	15	2.2	15	94	5	57	68	0	0	31	0.90
52905--52953	25	2.0	24	84	8	62	22	30	8	38	1.83
56325--56443	41	2.9	41	77	10	118	35	15	21	27	1.94
56950--57013	32	1.9	32	84	12	85	14	10	17	57	1.64
65754--65930	44	4.1	44	88	4	252	29	24	16	29	1.96
65961--66022	32	1.9	32	84	12	83	32	24	14	29	1.94
67238--67271	14	2.4	14	95	0	59	29	11	5	52	1.61
68198--68267	21	3.4	21	76	4	79	21	18	25	34	1.96
68194--68294	41	2.5	41	91	0	157	19	16	22	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68431--68475	5	8.6	5	92	2	63	26	53	20	0	1.46
68975--69018	17	2.5	17	92	3	70	0	18	54	27	1.44
68972--69018	23	2.1	22	92	4	76	0	19	53	27	1.45
69128--69221	22	4.4	22	81	8	131	38	25	18	18	1.93
69237--69368	21	6.4	21	74	3	133	34	25	18	21	1.96
69210--69327	62	1.9	62	94	0	209	35	25	18	20	1.95
69256--69372	41	2.9	41	94	0	207	35	23	20	20	1.96
69275--69347	20	3.6	20	70	3	74	38	23	23	15	1.92
69210--69376	21	8.1	21	71	4	115	36	24	18	20	1.95
72313--72342	15	2.0	15	93	0	51	50	13	10	26	1.73
76481--76515	16	2.2	16	100	0	70	51	5	11	31	1.61
81872--81920	14	3.4	14	82	2	62	63	0	20	16	1.31

Tables:   1

The End!