Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006174.1 Hibiscus syriacus cultivar Beakdansim tig00014678_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91003

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7960--8201
125
1.9
125
97
0
457
40
6
24
28
1.80
15427--15489
18
3.7
16
73
12
54
77
3
15
3
1.02
15430--15462
11
3.1
11
86
8
50
75
0
21
3
0.93
15427--15512
14
6.1
13
71
20
57
75
2
19
2
1.02
17712--17791
42
1.9
42
84
0
106
25
22
18
33
1.97
17974--18064
42
2.2
41
84
2
119
23
23
21
31
1.98
17587--18280
262
2.7
261
91
2
1083
34
14
15
35
1.89
18421--18520
3
31.7
3
72
9
65
35
3
0
62
1.11
18430--18522
45
2.1
45
85
4
125
35
2
0
62
1.07
19906--19938
3
11.3
3
87
6
50
33
0
3
63
1.10
19911--19937
14
1.9
14
100
0
54
29
0
3
66
1.09
21163--21198
16
2.3
17
86
13
51
22
2
2
72
1.11
21371--21427
25
2.2
25
82
11
71
47
5
0
47
1.24
22856--22898
16
2.6
17
78
10
54
16
6
2
74
1.14
27094--27137
22
2.0
21
86
4
61
77
2
20
0
0.88
29838--30112
108
2.5
108
83
2
338
37
15
22
25
1.93
29838--30112
54
5.1
54
81
0
300
37
15
22
25
1.93
31138--31399
116
2.2
116
93
0
443
30
20
20
27
1.98
31653--31708
3
19.3
3
81
7
71
37
0
1
60
1.07
31653--31708
11
4.8
12
82
8
71
37
0
1
60
1.07
33445--33481
2
18.5
2
100
0
74
48
0
0
51
1.00
34451--34483
15
2.1
16
88
5
50
33
3
0
63
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35655--35695
9
4.7
9
82
11
50
24
19
24
31
1.98
36330--36407
32
2.5
32
95
2
140
24
14
21
39
1.90
36671--36737
6
11.3
6
71
15
50
34
0
1
64
1.03
43507--43649
21
6.8
21
88
8
154
39
23
20
17
1.92
48397--48586
36
5.2
36
85
1
229
36
22
18
22
1.95
48800--50539
51
33.8
51
84
3
1988
33
18
25
22
1.97
48800--50534
413
4.2
413
94
0
2869
33
18
25
22
1.97
50516--50641
55
2.3
53
75
16
132
30
13
28
26
1.94
56725--56767
16
2.8
15
77
19
52
46
0
0
53
1.00
56733--56776
16
2.6
18
78
10
56
54
0
0
45
0.99
57738--57781
22
2.0
22
82
8
54
43
18
0
38
1.50
57771--57846
23
3.3
23
68
15
66
38
22
2
36
1.68
58957--59018
11
5.9
10
79
9
61
22
4
3
69
1.22
58958--59022
31
2.1
31
83
11
80
20
4
3
72
1.16
67855--67941
35
2.5
34
80
12
97
55
10
8
26
1.61
68163--68206
3
14.7
3
85
0
61
2
34
29
34
1.70
68157--68206
12
4.2
12
86
0
55
6
34
26
34
1.81
70221--70261
18
2.3
18
91
4
66
65
0
4
29
1.13
71143--71194
25
2.1
25
81
0
59
63
1
1
32
1.16
71357--71400
20
2.3
19
84
7
54
45
6
25
22
1.77
71540--71615
36
2.1
37
85
11
104
46
2
2
48
1.30
72822--72846
2
12.5
2
100
0
50
48
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75572--75615
2
22.0
2
90
9
72
47
0
2
50
1.13
77229--77262
15
2.3
15
94
0
59
14
14
32
38
1.87
78701--78737
19
1.9
19
94
0
65
37
10
13
37
1.80
78749--78803
2
28.0
2
92
3
94
49
0
1
49
1.11
79139--79213
39
1.9
39
86
0
105
41
14
5
38
1.69
81392--81451
19
3.3
19
86
4
88
15
21
28
35
1.93
81867--81894
12
2.3
12
100
0
56
39
7
7
46
1.59
84181--84283
44
2.4
44
86
1
136
25
20
24
30
1.99
85912--85984
2
37.5
2
94
5
132
50
0
0
49
1.00
86954--87002
24
2.2
23
86
13
68
26
22
18
32
1.97

Tables:   1

The End!