Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006175.1 Hibiscus syriacus cultivar Beakdansim tig00014681_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48721
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Found at i:2771 original size:64 final size:64
Alignment explanation
Indices: 2659--2823 Score: 176
Period size: 64 Copynumber: 2.6 Consensus size: 64
2649 TTGTTTAAGG
* * ** *
2659 TGCATCGATGCACATGCAGTGCATCGATGCATGATTTTAAATAGAAAACATCGAATAGGA-TTTA
1 TGCATCGATGCACAAGCAGTGCATCGATGCATCACATTAAATAGAAAACATCGAAT-GCATTTTA
* * *
2723 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATA-AAAACATCGAATGCATTTTT
1 TGCATCGATGCACAAGCAGTGCATCGATGCAT-CACATTAAATAGAAAACATCGAATGCA-TTTT
2787 A
64 A
* * *
2788 TGCACCAATGCACAAGTAGTGCATCGA-GCAT-ACATT
1 TGCATCGATGCACAAGCAGTGCATCGATGCATCACATT
2824 CATTGAAAGA
Statistics
Matches: 85, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
62 4 0.05
63 2 0.02
64 45 0.53
65 34 0.40
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (64 bp):
TGCATCGATGCACAAGCAGTGCATCGATGCATCACATTAAATAGAAAACATCGAATGCATTTTA
Found at i:2809 original size:65 final size:64
Alignment explanation
Indices: 2695--2818 Score: 162
Period size: 65 Copynumber: 1.9 Consensus size: 64
2685 ATGCATGATT
* * * *
2695 TTAAATAGAAAACATCGAATAGGATTTATGCATCGATGCATAAGGAGTGCATCGATGCATCCCCA
1 TTAAATAGAAAACATCGAATAGCATTTATGCACCAATGCACAAGGAGTGCATCGA-GCATCCCCA
*
2760 TTAAATA-AAAACATCGAAT-GCATTTTTATGCACCAATGCACAAGTAGTGCATCGAGCAT
1 TTAAATAGAAAACATCGAATAGCA--TTTATGCACCAATGCACAAGGAGTGCATCGAGCAT
2819 ACATTCATTG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
63 2 0.04
64 16 0.31
65 34 0.65
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.26
Consensus pattern (64 bp):
TTAAATAGAAAACATCGAATAGCATTTATGCACCAATGCACAAGGAGTGCATCGAGCATCCCCA
Found at i:3327 original size:17 final size:19
Alignment explanation
Indices: 3305--3340 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
3295 GATTTACACG
3305 AATACATGT-ATAT-ATAT
1 AATACATGTGATATGATAT
3322 AATACATGTGATATGATAT
1 AATACATGTGATATGATAT
3341 GAGATATATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
18 4 0.24
19 4 0.24
ACGTcount: A:0.44, C:0.06, G:0.11, T:0.39
Consensus pattern (19 bp):
AATACATGTGATATGATAT
Found at i:3513 original size:31 final size:30
Alignment explanation
Indices: 3474--3566 Score: 91
Period size: 30 Copynumber: 3.1 Consensus size: 30
3464 GTCGAGGGTT
3474 TTACCTATG-TCTTTCGAGACATATGGACAG
1 TTACCTATGTTCTTT-GAGACATATGGACAG
** *
3504 TATACCTATGTTCTAAG-GAACATGTGGACAG
1 T-TACCTATGTTCTTTGAG-ACATATGGACAG
* * *
3535 TTACCTAGGTTCTTTGGGACCTATGGACAG
1 TTACCTATGTTCTTTGAGACATATGGACAG
3565 TT
1 TT
3567 GCCGAGGTTC
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
30 26 0.51
31 22 0.43
32 3 0.06
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (30 bp):
TTACCTATGTTCTTTGAGACATATGGACAG
Found at i:3562 original size:30 final size:30
Alignment explanation
Indices: 3495--3599 Score: 93
Period size: 30 Copynumber: 3.5 Consensus size: 30
3485 TTTCGAGACA
* ** * *
3495 TATGGACAGTATACCTATGTTCTAAGGAACA
1 TATGGACAGT-TACCTAGGTTCTTTGGGACC
*
3526 TGTGGACAGTTACCTAGGTTCTTTGGGACC
1 TATGGACAGTTACCTAGGTTCTTTGGGACC
* * **
3556 TATGGACAGTTGCCGAGGTTCTTTATGACC
1 TATGGACAGTTACCTAGGTTCTTTGGGACC
* *
3586 TCTGGATAGTTACC
1 TATGGACAGTTACC
3600 GGGGTCTGTG
Statistics
Matches: 60, Mismatches: 14, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
30 51 0.85
31 9 0.15
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (30 bp):
TATGGACAGTTACCTAGGTTCTTTGGGACC
Found at i:6487 original size:64 final size:63
Alignment explanation
Indices: 6402--6560 Score: 203
Period size: 64 Copynumber: 2.5 Consensus size: 63
6392 TTGTTTAAGG
* * ** *
6402 TGCATCGATGCACATGCAGTGCATCGATGCAT-GATTTTAAATAGAAAACATCGAATAGGATTTA
1 TGCATCGATGCACAAGCAGTGCATCGATGCATCCACATTAAATA-AAAACATCGAAT-GCATTTA
* * *
6466 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATAAAAACATCGAATGCATTTA
1 TGCATCGATGCACAAGCAGTGCATCGATGCATCCACATTAAATAAAAACATCGAATGCATTTA
* *
6529 TGCACCGATGCACAAGTAGTGCATCGATGCAT
1 TGCATCGATGCACAAGCAGTGCATCGATGCAT
6561 ACATTCATTG
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
63 35 0.42
64 41 0.49
65 7 0.08
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (63 bp):
TGCATCGATGCACAAGCAGTGCATCGATGCATCCACATTAAATAAAAACATCGAATGCATTTA
Found at i:7284 original size:30 final size:30
Alignment explanation
Indices: 7231--7303 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
7221 CTTTCGAGAT
*
7231 ATATGGACAGTATACCTATGTTCTAAGGAAC
1 ATATGGACAGT-TACCTAGGTTCTAAGGAAC
** *
7262 ATATGGACAGTTACCTAGGTTCTTTGGGAC
1 ATATGGACAGTTACCTAGGTTCTAAGGAAC
*
7292 CTATGGACAGTT
1 ATATGGACAGTT
7304 GTCGAGGTTC
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 26 0.70
31 11 0.30
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (30 bp):
ATATGGACAGTTACCTAGGTTCTAAGGAAC
Found at i:7323 original size:30 final size:30
Alignment explanation
Indices: 7232--7337 Score: 88
Period size: 30 Copynumber: 3.5 Consensus size: 30
7222 TTTCGAGATA
* * * *
7232 TATGGACAGTATACCTATGTTC-TAAGGAACA
1 TATGGACAGT-TACCGAGGTTCTTTAGG-ACC
* *
7263 TATGGACAGTTACCTAGGTTCTTTGGGACC
1 TATGGACAGTTACCGAGGTTCTTTAGGACC
** *
7293 TATGGACAGTTGTCGAGGTTCTTTATGACC
1 TATGGACAGTTACCGAGGTTCTTTAGGACC
* *
7323 TCTGGATAGTTACCG
1 TATGGACAGTTACCG
7338 GGTCTGTGTG
Statistics
Matches: 61, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
30 48 0.79
31 13 0.21
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33
Consensus pattern (30 bp):
TATGGACAGTTACCGAGGTTCTTTAGGACC
Found at i:9082 original size:21 final size:21
Alignment explanation
Indices: 9040--9082 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
9030 TTTCTGGGTT
* * *
9040 AGGGGAATCGGTACCCATTCA
1 AGGGGAACCGATACCCACTCA
*
9061 AGGGGAACCGATACCCCCTCA
1 AGGGGAACCGATACCCACTCA
9082 A
1 A
9083 CGAAATGAAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.30, G:0.26, T:0.14
Consensus pattern (21 bp):
AGGGGAACCGATACCCACTCA
Found at i:9145 original size:68 final size:66
Alignment explanation
Indices: 9062--9212 Score: 205
Period size: 69 Copynumber: 2.3 Consensus size: 66
9052 ACCCATTCAA
* *
9062 GGGGAACCGATACCCCCTCAACG-AAATGAATTTCCAGAATGCTAGAGGGGAATCGGTACCCCCA
1 GGGGAACCGATACCCCCTCAACGTAAATGAAATTCCAGAATGCTAGAGGGGAATCGATA-CCCCA
9126 GGGG
65 --GG
* * * *
9130 GGGGAACCGATACCCCCTCATCGTATATGAAATTCCAGATTGCTTGAGGGGAATCGATACCCCAG
1 GGGGAACCGATACCCCCTCAACGTAAATGAAATTCCAGAATGCTAGAGGGGAATCGATACCCCAG
9195 G
66 G
*
9196 GGGGAACCGATTCCCCC
1 GGGGAACCGATACCCCC
9213 ATGAGAAAAA
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
66 18 0.24
68 27 0.36
69 30 0.40
ACGTcount: A:0.27, C:0.28, G:0.28, T:0.17
Consensus pattern (66 bp):
GGGGAACCGATACCCCCTCAACGTAAATGAAATTCCAGAATGCTAGAGGGGAATCGATACCCCAG
G
Found at i:9571 original size:29 final size:29
Alignment explanation
Indices: 9515--9587 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 29
9505 CATATTATGA
**
9515 TACATGACATGAAATTTGTATTAAATGTAT
1 TACATGACATG-AATTCATATTAAATGTAT
*
9545 TACATGACATGAATTCATATTATATGTAT
1 TACATGACATGAATTCATATTAAATGTAT
9574 TACATGACATGAAT
1 TACATGACATGAAT
9588 ATGCAGAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 29 0.73
30 11 0.28
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (29 bp):
TACATGACATGAATTCATATTAAATGTAT
Found at i:9941 original size:23 final size:22
Alignment explanation
Indices: 9881--9948 Score: 118
Period size: 22 Copynumber: 3.0 Consensus size: 22
9871 TTATGGACAT
9881 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
9903 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
*
9925 AATTCTACGGGGCACTTCAGTGC
1 AATTCTAC-GGGCACTTCGGTGC
9948 A
1 A
9949 TTTATACGAG
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
22 30 0.68
23 14 0.32
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (22 bp):
AATTCTACGGGCACTTCGGTGC
Found at i:16119 original size:23 final size:22
Alignment explanation
Indices: 16059--16126 Score: 127
Period size: 22 Copynumber: 3.0 Consensus size: 22
16049 TTATGGACAT
16059 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
16081 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
16103 AATTCTACGGGGCACTTCGGTGC
1 AATTCTAC-GGGCACTTCGGTGC
16126 A
1 A
16127 TTTATACGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
22 30 0.67
23 15 0.33
ACGTcount: A:0.19, C:0.26, G:0.28, T:0.26
Consensus pattern (22 bp):
AATTCTACGGGCACTTCGGTGC
Found at i:22204 original size:21 final size:21
Alignment explanation
Indices: 22162--22204 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
22152 TTTCCGGGTT
* * *
22162 AGGGGAATCGGTACCCATTCA
1 AGGGGAACCGATACCCACTCA
*
22183 AGGGGAACCGATACCCCCTCA
1 AGGGGAACCGATACCCACTCA
22204 A
1 A
22205 CGAAATGAAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.30, G:0.26, T:0.14
Consensus pattern (21 bp):
AGGGGAACCGATACCCACTCA
Found at i:22267 original size:68 final size:67
Alignment explanation
Indices: 22184--22335 Score: 216
Period size: 69 Copynumber: 2.3 Consensus size: 67
22174 ACCCATTCAA
* *
22184 GGGGAACCGATACCCCCTCAACG-AAATGAATTTCCAGAATGCTAGAGGGGAATCGGTACCCCCA
1 GGGGAACCGATACCCCCTCAACGTAAATGAAATTCCAGAATGCTAGAGGGGAATCGATA-CCCCA
22248 GGGG
65 -GGG
* * * *
22252 GGGGAACCGATACCCCCTCATCGTATATGAAATTCCAGATTGCTTGAGGGGAATCGATACCCCAG
1 GGGGAACCGATACCCCCTCAACGTAAATGAAATTCCAGAATGCTAGAGGGGAATCGATACCCCAG
22317 GG
66 GG
*
22319 GGGGAACCGATTCCCCC
1 GGGGAACCGATACCCCC
22336 ATGAGAAAAA
Statistics
Matches: 76, Mismatches: 7, Indels: 3
0.88 0.08 0.03
Matches are distributed among these distances:
67 19 0.25
68 27 0.36
69 30 0.39
ACGTcount: A:0.27, C:0.28, G:0.28, T:0.17
Consensus pattern (67 bp):
GGGGAACCGATACCCCCTCAACGTAAATGAAATTCCAGAATGCTAGAGGGGAATCGATACCCCAG
GG
Found at i:22694 original size:29 final size:29
Alignment explanation
Indices: 22638--22710 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
22628 CATATTATGA
* **
22638 TACATTACATGAAATTTGTATTAAATGTAT
1 TACATGACATG-AATTCATATTAAATGTAT
*
22668 TACATGACATGAATTCATATTATATGTAT
1 TACATGACATGAATTCATATTAAATGTAT
22697 TACATGACATGAAT
1 TACATGACATGAAT
22711 ATGCAGAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 29 0.74
30 10 0.26
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.40
Consensus pattern (29 bp):
TACATGACATGAATTCATATTAAATGTAT
Found at i:23064 original size:23 final size:22
Alignment explanation
Indices: 23004--23071 Score: 127
Period size: 22 Copynumber: 3.0 Consensus size: 22
22994 TTATGGACAT
23004 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
23026 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
23048 AATTCTACGGGGCACTTCGGTGC
1 AATTCTAC-GGGCACTTCGGTGC
23071 A
1 A
23072 TTTATACGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
22 30 0.67
23 15 0.33
ACGTcount: A:0.19, C:0.26, G:0.28, T:0.26
Consensus pattern (22 bp):
AATTCTACGGGCACTTCGGTGC
Found at i:27737 original size:6 final size:6
Alignment explanation
Indices: 27726--27764 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
27716 TCTATTATCA
*
27726 CCACCT CCACCT CCACCT CCACCT CTACCT CCACCT CCA
1 CCACCT CCACCT CCACCT CCACCT CCACCT CCACCT CCA
27765 TTAAGGCACC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.18, C:0.64, G:0.00, T:0.18
Consensus pattern (6 bp):
CCACCT
Found at i:27898 original size:14 final size:13
Alignment explanation
Indices: 27870--27921 Score: 52
Period size: 13 Copynumber: 3.8 Consensus size: 13
27860 AAAGAAGACG
27870 AATAAAAATTATT
1 AATAAAAATTATT
*
27883 AATAAAAATATTTT
1 AATAAAAAT-TATT
*
27897 AAAAATAAATTATAT
1 AATAA-AAATTAT-T
27912 AA-AAAAATTA
1 AATAAAAATTA
27922 CAAATTTCAG
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
13 15 0.45
14 11 0.33
15 7 0.21
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
AATAAAAATTATT
Found at i:29367 original size:29 final size:29
Alignment explanation
Indices: 29319--29395 Score: 118
Period size: 29 Copynumber: 2.7 Consensus size: 29
29309 GAACGAGTGT
* *
29319 AGGTCGCCCAGAGTGCATGGCGACCTACA
1 AGGTCGCCCGGAGGGCATGGCGACCTACA
*
29348 AGGTCGCCCGGAGGGTATGGCGACCTACA
1 AGGTCGCCCGGAGGGCATGGCGACCTACA
*
29377 AGGTCGCCCGGAGGACATG
1 AGGTCGCCCGGAGGGCATG
29396 ACGATCTATG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.22, C:0.29, G:0.36, T:0.13
Consensus pattern (29 bp):
AGGTCGCCCGGAGGGCATGGCGACCTACA
Found at i:29430 original size:26 final size:26
Alignment explanation
Indices: 29392--29447 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
29382 GCCCGGAGGA
*
29392 CATGACGATCTATGTGTTGGGACGTG
1 CATGACGACCTATGTGTTGGGACGTG
*
29418 CATGGCGACCTATGTGTTGGGACGTG
1 CATGACGACCTATGTGTTGGGACGTG
29444 CATG
1 CATG
29448 TGTCATACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.18, C:0.18, G:0.36, T:0.29
Consensus pattern (26 bp):
CATGACGACCTATGTGTTGGGACGTG
Found at i:31561 original size:13 final size:13
Alignment explanation
Indices: 31539--31572 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
31529 AAAACTCCCA
*
31539 TTTCTTTCTCTCT
1 TTTCTCTCTCTCT
31552 TTTCTCTCTCTCT
1 TTTCTCTCTCTCT
31565 TTT-TCTCT
1 TTTCTCTCT
31573 ATTTTTTCGC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 5 0.25
13 15 0.75
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTCTCTCTCTCT
Found at i:33811 original size:14 final size:14
Alignment explanation
Indices: 33792--33819 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
33782 AAGAGCGTGC
33792 GACACTGAGAGAGA
1 GACACTGAGAGAGA
33806 GACACTGAGAGAGA
1 GACACTGAGAGAGA
33820 AAGAGAGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.36, T:0.07
Consensus pattern (14 bp):
GACACTGAGAGAGA
Found at i:34137 original size:14 final size:13
Alignment explanation
Indices: 34120--34153 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
34110 TTTTCATCCA
*
34120 TTTCTTTCTCTCTT
1 TTTCTCTCTCT-TT
34134 TTTCTCTCTCTTT
1 TTTCTCTCTCTTT
34147 TTTCTCT
1 TTTCTCT
34154 ATTTTTTCGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.47
14 10 0.53
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTCTCTCTCTTT
Found at i:34152 original size:11 final size:11
Alignment explanation
Indices: 34124--34161 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
34114 CATCCATTTC
34124 TTTCTCTCTTT
1 TTTCTCTCTTT
34135 TTCTCTCTCTTT
1 TT-TCTCTCTTT
*
34147 TTTCTCTATTT
1 TTTCTCTCTTT
34158 TTTC
1 TTTC
34162 GCATCCTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.03, C:0.26, G:0.00, T:0.71
Consensus pattern (11 bp):
TTTCTCTCTTT
Found at i:45564 original size:2 final size:2
Alignment explanation
Indices: 45557--45607 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
45547 CCACCCTGAA
45557 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
45599 AT AT AT AT A
1 AT AT AT AT A
45608 ATGTGAAATT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Done.