genome.fa.s6176.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006176.1 Hibiscus syriacus cultivar Beakdansim tig00014682_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113789

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1093--1179	30	3.0	30	89	3	124	31	34	11	22	1.90
3524--3583	23	2.6	23	91	0	102	30	26	26	16	1.97
3803--3862	31	2.0	30	87	9	86	36	23	1	38	1.65
10416--10460	23	2.0	23	81	0	54	31	26	24	17	1.97
10425--10484	23	2.6	23	81	5	77	30	26	25	18	1.98
10706--10765	31	2.0	30	87	9	86	36	23	1	38	1.65
12075--12113	20	2.0	20	85	10	53	35	17	23	23	1.95
12385--12427	20	2.2	20	87	4	61	39	4	25	30	1.76
15594--15650	28	2.0	29	82	6	71	36	35	5	22	1.77
17525--17607	30	2.7	31	77	5	89	40	6	13	39	1.69
21469--21510	22	2.0	21	86	13	59	64	7	0	28	1.20
21512--21559	21	2.3	21	100	0	96	29	16	10	43	1.81
24277--24314	6	6.3	6	93	0	67	31	50	0	18	1.47
24732--24757	2	13.0	2	100	0	52	50	0	0	50	1.00
25028--25080	29	1.9	27	85	11	72	54	7	1	35	1.40
29213--29297	30	2.8	31	72	10	86	60	4	15	20	1.53
31063--31101	3	12.7	3	83	5	51	64	2	2	30	1.21
31336--31606	141	1.9	141	89	3	420	25	18	28	27	1.98
32557--32600	22	2.0	22	90	0	70	4	13	2	79	0.98
44362--44447	30	2.8	31	72	10	88	59	4	16	19	1.54
46192--46230	3	12.7	3	83	5	51	64	2	2	30	1.21
47100--47129	3	10.0	3	100	0	60	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47449--47489	17	2.5	16	84	7	55	46	2	0	51	1.14
51936--52066	66	2.0	66	95	0	235	38	12	22	25	1.89
55388--56547	182	6.4	182	91	2	1771	43	12	15	28	1.83
55388--56547	363	3.2	364	90	1	1780	43	12	15	28	1.83
56513--56560	20	2.5	20	96	3	89	50	16	18	14	1.79
58624--59102	198	2.4	197	80	4	527	39	13	14	31	1.86
60733--60824	42	2.2	42	94	0	157	21	15	15	47	1.81
61066--61115	8	6.4	8	73	13	50	58	2	0	40	1.10
60994--61091	51	2.0	49	80	15	112	50	3	0	46	1.17
61066--61126	23	2.6	24	82	7	72	54	1	1	42	1.20
62068--62133	30	2.2	30	83	0	78	10	28	24	36	1.89
62455--62514	22	2.7	22	78	2	57	48	0	3	48	1.18
62495--62549	19	3.2	17	73	16	51	40	0	1	58	1.09
62686--62740	28	2.0	28	85	7	76	36	14	5	43	1.69
64222--64296	33	2.3	33	88	4	107	20	21	34	24	1.96
65918--66048	66	2.0	66	93	0	226	38	12	22	25	1.90
70909--70958	8	6.4	8	79	4	57	60	2	0	38	1.09
70909--70958	23	2.1	24	88	3	75	60	2	0	38	1.09
71078--71121	22	2.0	22	86	4	61	54	2	2	40	1.25
71216--71307	22	4.3	23	71	14	72	50	0	1	48	1.08
71469--71522	28	1.9	28	85	7	74	33	11	7	48	1.67
72996--73070	33	2.3	33	86	4	98	20	22	34	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74011--74071	23	2.6	23	87	7	79	59	0	0	40	0.98
79135--79171	19	1.9	19	88	0	56	32	27	16	24	1.96
79256--79329	20	3.7	20	76	7	87	36	21	20	21	1.95
79258--79390	40	3.3	40	89	5	196	32	23	21	23	1.98
79278--79402	20	6.2	20	77	9	137	29	24	20	24	1.99
79318--79433	61	1.9	61	87	0	169	29	24	20	25	1.99
79571--79628	22	2.6	22	80	0	71	22	39	15	22	1.91
80017--80121	20	5.4	19	80	5	77	15	16	21	46	1.83
82036--82106	20	3.5	20	88	0	97	39	22	22	15	1.92
82076--82141	34	1.9	34	84	0	87	42	21	22	13	1.88
82148--82178	14	2.2	14	94	0	53	6	19	22	51	1.69
82138--82207	32	2.2	33	86	2	97	14	20	22	42	1.88
82199--82287	20	4.4	20	89	0	133	17	17	24	39	1.92
82200--82287	40	2.2	40	93	0	149	18	17	25	39	1.91
82745--82859	21	5.5	21	70	4	79	21	36	19	22	1.95
82739--82859	42	2.9	42	79	0	116	21	35	19	23	1.96
84178--84214	14	2.6	14	100	0	74	29	0	21	48	1.50
84357--84406	20	2.5	20	86	0	73	36	18	18	28	1.94
84403--84461	20	3.0	20	97	0	109	45	25	20	8	1.79
84317--84594	153	1.8	153	96	0	520	32	21	20	25	1.98
84506--84559	20	2.7	20	88	0	81	31	18	18	31	1.95
84556--84594	20	2.0	20	94	0	69	46	25	20	7	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84371--84684	133	2.4	133	87	0	475	30	20	21	27	1.98
84697--84734	19	1.9	19	89	5	58	23	13	26	36	1.91
84637--84746	20	5.8	20	72	14	72	24	17	21	36	1.94
84724--85013	140	2.1	138	88	3	438	43	14	12	29	1.82
86147--86196	2	25.0	2	95	0	91	50	2	0	48	1.12
86469--86681	30	7.1	30	95	0	374	30	24	23	22	1.99
86670--86767	31	3.2	30	76	13	108	33	18	18	29	1.95
87664--87708	21	2.1	21	83	0	54	13	24	31	31	1.93
90175--90240	2	33.0	2	93	0	114	50	1	1	46	1.20
90513--90665	30	5.1	30	96	0	272	30	25	22	21	1.99
90654--90751	31	3.2	30	78	13	117	32	18	19	29	1.96
93826--93862	14	2.6	14	95	4	65	5	18	21	54	1.64
94052--94111	24	2.5	24	83	0	84	38	18	18	25	1.93
94908--95016	20	5.4	20	77	6	121	25	18	29	26	1.98
94963--95038	21	3.7	20	79	10	82	21	17	25	36	1.94
94931--95076	61	2.4	61	81	6	163	24	16	26	32	1.96
94946--95037	41	2.2	41	92	0	148	21	16	28	33	1.95
97685--97748	32	2.0	32	100	0	128	34	3	18	43	1.66
98557--98615	22	2.6	23	86	5	84	45	5	0	49	1.24
98949--99051	46	2.3	46	86	1	136	43	8	8	38	1.67
98950--99160	45	4.7	45	79	6	167	40	8	9	42	1.66
103276--103347	31	2.3	31	82	0	99	25	6	16	51	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104026--104089	29	2.2	30	80	8	78	50	0	3	46	1.17
106392--106434	12	3.7	12	81	6	61	48	37	0	13	1.43
106389--106442	23	2.3	23	100	0	108	46	40	0	12	1.42

Tables:   1

The End!