Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006177.1 Hibiscus syriacus cultivar Beakdansim tig00014683_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65893

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69--109
21
2.0
21
100
0
82
65
4
19
9
1.40
68--120
21
2.5
21
87
3
79
64
7
16
11
1.48
3876--3932
28
2.0
28
89
0
87
38
22
10
28
1.87
4573--4607
3
11.7
3
100
0
70
0
34
0
65
0.93
12688--13052
184
2.0
183
94
5
639
34
10
26
28
1.89
18471--18504
17
2.1
17
94
5
61
38
0
17
44
1.49
21858--21904
23
2.0
23
100
0
94
17
17
25
40
1.90
27478--27506
10
2.9
10
100
0
58
41
27
0
31
1.56
30574--30598
2
12.5
2
100
0
50
48
0
0
52
1.00
31606--31634
5
5.8
5
100
0
58
0
20
20
58
1.39
34936--35224
140
2.1
140
100
0
578
26
17
13
42
1.86
39765--39872
40
2.7
40
78
7
94
37
19
16
26
1.93
39817--40033
41
5.4
41
70
11
146
32
19
18
29
1.96
39839--40072
120
2.0
117
89
4
362
32
17
19
30
1.95
40140--40268
41
3.1
42
67
14
115
33
18
15
32
1.92
42489--42549
23
2.7
23
89
0
95
26
27
26
19
1.99
42565--42885
103
3.1
103
97
0
597
36
23
13
26
1.92
44069--44112
21
2.1
21
86
0
61
15
27
27
29
1.96
49352--49408
30
1.9
30
88
0
87
10
24
24
40
1.87
54679--54746
29
2.3
28
80
9
82
67
1
25
5
1.21
55016--55200
21
8.9
20
70
8
84
28
21
17
32
1.96
55190--55301
20
5.6
20
81
4
127
37
19
20
22
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55054--55309
41
6.3
41
70
12
152
33
19
18
28
1.96
55880--55992
20
6.1
19
75
13
101
13
23
20
42
1.87
59546--59581
14
2.6
14
95
0
63
30
0
25
44
1.54
59688--59805
19
6.7
19
72
20
96
46
19
19
14
1.84
59688--59781
33
2.8
33
95
0
161
45
19
20
14
1.85
59770--59815
19
2.4
19
92
0
74
45
23
15
15
1.84
59815--59940
33
3.8
33
94
1
209
13
23
18
44
1.85
59836--59923
14
5.6
14
69
23
50
12
23
19
44
1.85
59934--60006
20
3.6
20
68
17
51
24
16
24
34
1.95
62468--62521
24
2.2
24
90
0
81
40
20
16
22
1.91
63892--63950
20
3.0
20
87
0
73
44
22
18
15
1.87
64213--64256
22
2.0
22
95
0
79
18
15
45
20
1.85
64448--64490
20
2.2
20
86
0
59
30
9
27
32
1.88
64504--64574
20
3.5
20
86
0
88
19
25
15
39
1.91
64651--64696
19
2.3
20
81
7
58
26
17
28
28
1.98

Tables:   1

The End!