genome.fa.s6178.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006178.1 Hibiscus syriacus cultivar Beakdansim tig00014684_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68370

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11132--11205	25	3.2	25	62	31	63	56	5	6	31	1.48
11111--11206	45	2.1	45	100	0	192	57	4	6	32	1.43
14252--14296	20	2.2	20	88	0	63	28	15	37	17	1.91
14361--14442	32	2.6	32	82	7	96	14	23	29	32	1.94
19832--19891	21	2.7	23	82	7	79	16	25	33	25	1.96
19832--19892	22	2.7	22	80	7	70	16	24	32	26	1.96
21679--21743	23	2.8	23	75	6	78	32	23	24	20	1.98
21679--21752	23	3.2	22	71	16	69	35	20	22	21	1.96
23159--23203	21	2.1	21	91	0	72	17	24	26	31	1.97
31607--31641	3	11.0	3	88	11	52	62	5	0	31	1.18
32020--32062	21	2.0	22	90	4	70	25	18	16	39	1.91
32981--33016	18	2.0	18	100	0	72	50	16	11	22	1.77
35513--35589	18	4.6	18	81	15	110	16	50	18	14	1.78
35518--35615	31	3.2	31	97	0	178	16	48	19	15	1.80
35513--35615	18	6.3	18	74	21	109	16	49	19	14	1.80
35602--35643	8	5.5	8	88	11	70	14	35	26	23	1.93
35535--35602	13	4.8	13	76	16	73	16	48	20	14	1.81
35605--35644	7	5.4	7	91	8	62	12	35	27	25	1.92
35605--35643	15	2.6	15	100	0	78	12	35	25	25	1.92
38132--38231	24	4.2	24	74	5	94	23	13	17	47	1.82
38397--38445	2	24.5	2	100	0	98	48	0	0	51	1.00
44951--44989	15	2.5	15	83	8	51	56	0	2	41	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45128--45161	18	1.9	17	88	5	50	70	2	0	26	1.01
45694--45793	35	2.8	37	83	9	109	31	14	14	41	1.85
46262--47089	98	8.0	107	80	8	519	21	20	25	32	1.98
46798--46967	55	3.3	55	69	24	170	17	21	27	32	1.96
46850--47009	43	3.4	43	68	24	126	16	22	26	34	1.95
47649--47812	63	2.6	65	92	3	287	35	12	20	31	1.90
47777--48187	37	11.9	37	66	19	226	37	12	20	29	1.90
48083--48187	36	2.9	36	91	1	156	40	11	23	24	1.88
47714--48152	102	4.3	102	93	0	738	36	12	20	30	1.90
49045--49095	22	2.3	22	96	0	93	25	11	27	35	1.91
49705--49763	20	2.9	21	80	5	59	1	13	6	77	1.03
49738--49780	22	2.0	23	86	9	63	0	20	4	74	1.00
54285--54344	24	2.6	24	79	12	63	65	1	5	28	1.23
54316--54353	16	2.4	16	82	4	51	63	0	5	31	1.17
55043--55111	37	1.9	36	88	11	106	31	15	11	40	1.84
57079--57129	26	2.0	26	84	7	68	50	3	15	29	1.62
57715--57889	60	2.9	60	81	2	172	32	20	4	43	1.72
67350--67383	13	2.6	13	90	0	50	38	0	0	61	0.96

Tables:   1

The End!