Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006179.1 Hibiscus syriacus cultivar Beakdansim tig00014694_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101378

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5473--5511
20
2.1
19
85
9
53
56
7
0
35
1.28
7113--7189
3
23.7
3
72
15
55
63
1
1
33
1.11
7113--7189
7
11.8
6
81
9
55
63
1
1
33
1.11
7112--7184
13
6.0
13
73
16
59
64
1
0
34
1.02
7429--7475
22
2.2
22
84
3
60
57
2
8
31
1.41
8671--8763
2
47.0
2
97
2
179
49
0
0
50
1.00
11459--11486
2
14.0
2
100
0
56
50
0
50
0
1.00
11541--11604
31
2.0
32
84
3
85
32
43
1
21
1.62
13534--13581
23
2.0
24
84
11
64
39
0
6
54
1.26
14697--14812
58
2.0
59
84
5
155
38
15
17
28
1.90
17570--18439
260
3.4
255
88
5
1253
27
12
19
40
1.87
23433--23923
55
8.9
54
86
6
542
30
25
17
27
1.97
23434--23931
165
3.0
164
85
2
608
30
24
17
27
1.97
23926--24033
37
2.9
36
86
4
144
22
22
18
37
1.95
26524--26555
2
16.0
2
100
0
64
50
0
0
50
1.00
27245--27318
21
3.5
21
86
1
103
20
29
18
31
1.97
28742--28846
9
11.3
9
74
16
72
7
14
0
78
0.96
28775--28849
7
10.3
7
76
13
62
6
12
0
81
0.87
28748--28849
44
2.3
45
84
3
134
6
14
0
78
0.95
28789--28831
10
4.3
10
85
8
61
9
6
0
83
0.80
47219--47279
3
20.3
3
100
0
122
32
32
0
34
1.58
49142--49202
23
2.7
23
78
0
77
26
26
24
22
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49218--49435
103
2.1
103
100
0
436
36
23
13
26
1.92
50985--51040
21
2.7
21
97
0
103
19
25
23
32
1.98
54264--54324
23
2.7
23
84
0
86
27
26
26
19
1.99
57487--57537
17
3.0
17
80
13
61
62
1
0
35
1.06
57487--57537
18
2.9
16
82
11
57
62
1
0
35
1.06
59793--59899
44
2.5
43
78
7
110
30
16
15
36
1.91
63405--63446
16
2.7
16
85
3
50
66
0
16
16
1.25
63565--63613
3
17.0
3
91
8
84
65
0
0
34
0.93
64686--64995
38
7.9
38
76
15
262
47
6
2
43
1.41
64734--64995
76
3.4
75
82
11
291
48
5
1
43
1.37
65921--66286
41
8.7
41
72
8
234
35
18
17
28
1.94
65954--66133
93
1.9
93
83
0
234
32
18
18
30
1.95
68956--68999
21
2.1
21
100
0
88
38
25
18
18
1.92
69393--69441
19
2.6
18
79
17
55
28
18
14
38
1.90
77486--77714
112
2.1
112
92
0
379
28
16
19
35
1.94
78786--78880
34
3.1
29
79
15
111
41
8
8
42
1.65
87007--87059
19
2.8
20
85
5
74
67
5
5
20
1.32
90693--90754
23
2.7
23
87
2
90
20
25
30
22
1.98
99437--99471
4
8.5
4
87
6
52
71
0
5
22
1.07

Tables:   1

The End!