Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000618.1 Hibiscus syriacus cultivar Beakdansim tig00001196_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80849

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
753--801
19
2.5
18
84
15
62
32
14
8
44
1.74
753--804
21
2.6
19
84
6
68
32
15
7
44
1.75
4696--4747
21
2.6
21
90
6
81
32
13
7
46
1.72
7159--7188
9
3.4
9
95
4
53
83
0
16
0
0.65
7339--7387
16
2.9
16
84
6
53
16
22
0
61
1.34
11384--11437
16
3.2
16
81
7
63
16
18
0
64
1.29
13945--13999
18
3.2
18
65
15
53
32
21
21
23
1.98
13933--14010
33
2.4
33
95
0
138
28
23
17
30
1.97
16304--16349
11
4.0
12
77
8
51
71
4
10
13
1.27
16304--16346
23
1.9
22
90
4
68
69
4
11
13
1.33
20626--20664
12
3.3
12
89
3
62
0
2
12
84
0.72
20619--20677
21
3.0
21
79
16
72
0
3
15
81
0.82
20626--20676
12
4.6
11
76
16
52
0
1
13
84
0.71
21005--21050
11
4.0
12
77
8
51
71
4
10
13
1.27
21005--21047
23
1.9
22
90
4
68
69
4
11
13
1.33
22125--22179
27
2.0
29
83
13
73
50
9
3
36
1.51
33377--33465
44
2.0
44
88
0
133
24
17
21
35
1.95
37987--38033
23
2.0
23
100
0
94
17
12
21
48
1.79
40062--40166
36
2.9
36
91
1
158
29
34
4
31
1.78
40542--40588
25
2.0
24
84
16
62
74
8
17
0
1.05
40610--40656
14
3.1
15
75
12
51
72
6
19
2
1.17
44475--44535
13
5.0
12
74
23
56
31
36
1
31
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44461--44554
36
2.6
36
94
1
163
29
35
3
31
1.74
57000--57055
16
3.4
16
80
11
60
14
17
0
67
1.22
60096--60144
16
2.9
16
84
6
53
16
22
0
61
1.34
65324--65372
18
2.7
18
87
6
64
75
6
14
4
1.14
65325--65398
25
3.0
25
72
14
64
75
2
17
4
1.07
65324--65378
18
2.9
20
76
17
55
74
5
16
3
1.15
73697--73802
35
3.0
35
83
5
133
34
3
33
27
1.75

Tables:   1

The End!