genome.fa.s6180.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006180.1 Hibiscus syriacus cultivar Beakdansim tig00014695_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72302

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8818--8895	2	39.0	2	100	0	156	50	0	0	50	1.00
10409--10453	18	2.7	16	80	12	54	35	15	0	48	1.45
12042--12172	42	3.2	42	87	3	194	25	3	16	53	1.60
14275--14318	21	2.1	21	86	0	61	40	9	31	18	1.81
14352--14417	33	2.0	33	90	0	105	28	0	48	22	1.51
16208--16256	19	2.6	19	96	0	89	32	2	10	55	1.45
16490--17452	399	2.4	400	95	0	1741	36	14	18	30	1.91
16490--17452	200	4.8	200	96	0	1714	36	14	18	30	1.91
18949--19001	3	17.7	3	80	0	52	39	5	32	22	1.78
18949--19000	12	4.3	12	87	0	59	40	5	32	21	1.77
20209--20778	183	3.1	183	94	1	982	35	14	16	33	1.89
24401--24440	21	1.9	21	94	0	71	15	25	35	25	1.94
27107--27146	21	1.9	21	89	0	62	10	25	40	25	1.86
27129--27189	20	2.9	21	85	7	70	16	26	32	24	1.96
31000--31039	21	1.9	21	85	10	55	35	10	2	52	1.48
33637--33799	87	1.9	87	94	2	292	33	14	10	41	1.80
33721--33765	23	2.0	23	86	0	63	37	15	8	37	1.79
34574--34618	21	2.1	21	87	0	63	31	28	24	15	1.96
35448--35570	31	4.0	31	91	2	194	21	20	21	36	1.95
38532--38576	21	2.1	21	87	0	63	31	28	24	15	1.96
39443--39565	31	4.0	31	88	4	178	22	20	20	36	1.95
41071--41121	22	2.2	24	79	10	61	41	1	1	54	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44098--44153	23	2.4	23	100	0	112	23	14	17	44	1.85
44200--44299	48	2.1	47	90	1	155	39	17	12	32	1.86
46768--46840	36	2.0	36	97	0	137	27	15	10	46	1.79
47764--47815	27	1.9	27	84	7	70	50	1	7	40	1.42
47815--47883	31	2.2	31	79	5	77	33	2	2	60	1.26
47867--48020	27	5.7	27	74	17	106	54	0	3	41	1.19
48009--48615	226	2.8	215	90	6	934	32	14	14	39	1.86
49519--49609	46	2.0	46	100	0	182	46	19	4	29	1.70
50330--50381	23	2.3	23	89	0	77	46	9	13	30	1.75
51858--51969	40	2.8	40	86	1	152	29	15	20	34	1.93
53140--53176	15	2.5	15	90	0	56	48	8	10	32	1.67
56036--56077	21	2.0	21	95	0	75	26	28	21	23	1.99
56181--56237	15	3.5	15	72	25	53	19	24	36	19	1.94
56179--56258	34	2.3	35	95	2	144	18	25	37	18	1.94
56196--56289	20	5.0	20	71	18	78	17	27	34	21	1.95
58239--58282	3	15.0	3	88	4	63	0	29	2	68	1.02
59273--59342	34	2.1	34	86	5	99	21	30	15	32	1.94
59625--59666	21	2.0	21	90	0	66	28	28	19	23	1.98
59780--59836	15	3.5	15	72	25	53	19	22	36	21	1.95
59779--59864	34	2.4	36	88	3	131	20	24	34	19	1.96
64914--64953	2	20.0	2	100	0	80	50	0	0	50	1.00
69843--69876	18	1.9	17	88	5	50	32	2	61	2	1.26

Tables:   1

The End!