genome.fa.s6183.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006183.1 Hibiscus syriacus cultivar Beakdansim tig00014709_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57104

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2981--3063	15	5.3	15	72	10	60	3	30	19	46	1.66
3683--3749	32	2.1	32	88	0	98	25	20	13	40	1.89
3683--3740	16	3.6	16	88	0	89	22	20	13	43	1.87
3887--3954	30	2.3	28	83	14	84	51	1	1	45	1.19
4009--4079	21	3.1	23	90	10	119	46	0	4	49	1.21
5145--5175	2	15.5	2	100	0	62	48	0	0	51	1.00
5276--5320	20	2.3	19	85	11	56	42	2	33	22	1.66
5550--5628	7	11.4	7	79	2	70	49	29	0	21	1.50
5795--5942	70	2.1	71	91	3	237	44	5	2	47	1.37
6033--6110	13	5.6	13	75	14	75	42	3	5	48	1.43
5978--6101	18	6.4	18	71	20	81	43	3	5	47	1.43
6145--6886	388	1.9	386	88	5	1041	37	19	15	28	1.92
7125--7180	21	2.7	21	94	0	94	23	25	26	25	2.00
7280--7367	45	2.0	45	86	8	126	30	18	25	26	1.98
12742--12829	45	2.0	45	93	4	151	27	19	27	26	1.99
13252--13474	111	2.0	111	100	0	446	32	15	23	28	1.95
13572--13709	64	2.1	64	84	6	181	29	15	22	31	1.95
16461--16763	151	2.0	152	95	1	547	44	13	8	34	1.73
16937--16975	17	2.2	18	90	4	62	58	0	0	41	0.98
16991--17177	39	4.8	39	91	1	295	46	0	17	36	1.48
16994--17177	78	2.4	78	96	0	332	46	0	17	36	1.48
22881--22908	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22980--23051	30	2.4	29	82	8	92	30	4	1	63	1.21
23162--23507	180	1.9	182	95	1	633	44	4	1	49	1.31
23526--23599	29	2.6	28	76	6	78	55	0	8	36	1.30
23677--23751	29	2.6	30	89	6	118	65	1	4	29	1.19
24000--24033	17	2.0	17	88	0	50	70	0	0	29	0.87
24234--24319	39	2.2	39	97	0	163	36	8	18	37	1.81
25601--25634	18	1.9	17	88	5	50	64	5	0	29	1.17
29367--29400	18	1.9	17	88	5	50	55	8	2	32	1.45
30125--30161	11	3.5	10	89	10	56	86	0	2	10	0.67
43784--43823	14	2.8	15	88	7	57	35	27	7	30	1.84
51703--51778	29	2.6	29	91	0	125	13	38	27	21	1.90
51703--51788	29	3.0	27	86	10	100	12	38	26	22	1.90
52249--52283	10	3.6	10	88	3	54	68	0	31	0	0.90
52410--52453	21	2.1	21	91	0	70	29	0	15	54	1.42
52430--52483	28	1.9	28	100	0	108	27	0	14	57	1.38
53221--53251	2	15.5	2	100	0	62	48	0	0	51	1.00
53249--53275	4	6.8	4	100	0	54	25	0	0	74	0.83
56076--56125	27	1.9	25	88	8	73	48	0	6	46	1.27
56071--56309	117	2.2	104	84	10	300	43	0	11	45	1.40
56214--56311	45	2.1	46	90	3	153	43	0	11	44	1.39
56281--56340	14	4.3	14	79	8	68	46	1	10	41	1.47
56504--56818	11	28.3	11	64	23	67	42	1	11	44	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56514--56581	8	8.2	8	78	15	68	35	0	13	51	1.41
56505--56594	19	5.1	18	73	22	84	35	0	14	50	1.43
56505--56591	35	2.5	35	96	1	158	35	0	13	50	1.42
56514--56608	19	5.8	15	73	21	66	36	0	13	49	1.43
56649--56726	20	3.7	23	73	14	78	48	3	5	42	1.43
56893--56956	18	3.8	18	73	21	66	39	1	9	50	1.44
56893--56975	14	5.3	15	73	20	64	38	1	7	53	1.37

Tables:   1

The End!