genome.fa.s6184.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006184.1 Hibiscus syriacus cultivar Beakdansim tig00014710_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88191

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2753--2810	24	2.4	24	88	0	89	36	27	18	17	1.94
10558--10597	21	1.9	21	89	0	62	25	40	25	10	1.86
17152--17185	9	3.8	9	88	0	50	32	14	0	52	1.42
17418--17486	28	2.5	28	90	0	111	39	30	13	17	1.87
18512--18551	21	2.0	19	85	9	53	35	32	10	22	1.87
21372--21405	9	3.8	9	88	0	50	32	14	0	52	1.42
21734--21786	21	2.5	21	93	0	88	39	18	9	32	1.83
23186--23223	3	12.7	3	100	0	76	65	0	34	0	0.93
27467--27598	37	3.7	35	82	5	142	44	3	11	40	1.58
27579--27713	33	3.9	35	77	13	113	40	4	14	41	1.65
27604--27720	33	3.5	33	82	11	130	41	5	15	37	1.69
27730--27779	22	2.3	22	82	0	64	44	2	8	46	1.44
27794--27865	3	23.7	3	72	27	55	29	0	2	68	1.04
27792--27865	22	3.3	23	78	14	91	28	0	2	68	1.03
27797--27861	9	6.2	10	80	18	71	29	0	3	67	1.05
30632--30697	27	2.4	27	80	7	80	45	4	4	45	1.44
31341--31378	2	19.0	2	100	0	76	50	0	0	50	1.00
33354--33434	2	40.5	2	94	0	144	48	1	1	49	1.17
35181--35214	2	17.0	2	100	0	68	50	0	0	50	1.00
37059--37098	2	20.0	2	94	0	71	50	0	2	47	1.14
37834--37874	20	2.0	20	85	4	55	73	2	4	19	1.13
37998--38062	24	2.7	23	81	11	69	72	4	4	18	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38085--38119	2	17.5	2	100	0	70	51	0	0	48	1.00
38223--38265	19	2.3	18	84	15	52	67	6	2	23	1.27
39402--39452	2	27.0	2	81	18	65	50	0	1	47	1.12
39944--40711	105	7.3	105	92	0	1230	23	18	24	33	1.97
48109--48156	20	2.3	22	78	10	55	16	18	4	60	1.51
53480--53526	2	25.0	2	80	20	57	51	0	2	46	1.13
53894--53973	22	3.3	23	71	25	65	48	1	1	48	1.17
53881--53960	30	2.6	32	79	18	89	46	1	0	52	1.08
53944--54056	28	3.8	30	76	17	103	45	0	1	53	1.11
54018--54055	11	3.5	11	82	10	51	47	0	0	52	1.00
54050--54094	23	2.0	23	86	0	63	53	2	2	42	1.25
54187--54242	27	2.1	27	83	12	71	51	0	1	46	1.11
54384--54426	14	3.1	14	83	3	52	44	13	4	37	1.65
54441--54476	15	2.4	15	90	0	54	41	13	5	38	1.68
60080--60173	49	1.9	49	88	0	143	43	6	12	37	1.69
60217--60287	36	2.0	36	86	5	99	47	18	4	29	1.67
62398--62425	9	3.1	9	100	0	56	21	21	21	35	1.96
65118--65299	39	4.7	40	71	20	129	43	1	8	45	1.44
65098--65263	37	4.4	37	76	12	128	43	1	9	45	1.46
65124--65261	36	3.6	37	75	17	133	42	1	10	45	1.46
65251--65451	35	5.5	36	77	13	155	48	2	3	45	1.32
65255--65412	72	2.2	70	85	6	203	50	3	3	43	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65251--65408	35	4.4	35	79	12	169	51	3	3	42	1.33
65135--65465	38	8.8	38	73	12	127	45	1	6	46	1.39
65476--65516	13	3.3	13	86	6	59	26	2	0	70	0.99
66580--66635	14	4.1	14	74	19	55	19	1	3	75	1.05
66766--66833	23	2.8	24	78	13	77	19	8	1	70	1.21
66820--66856	16	2.2	17	86	13	51	16	8	2	72	1.19
70173--70415	95	2.5	95	82	4	274	34	17	16	31	1.92
71957--72020	31	2.1	31	84	0	83	39	20	21	18	1.93
81316--81343	8	3.5	8	100	0	56	39	0	10	50	1.37
84836--84893	7	8.4	7	83	16	61	75	0	15	8	1.02
84836--84893	8	7.2	8	75	14	57	75	0	15	8	1.02
84858--84909	20	2.7	18	83	13	68	76	0	19	3	0.93
84830--84903	32	2.2	34	90	4	116	75	0	16	8	1.02
86195--86301	37	2.9	37	85	4	135	37	17	18	26	1.93
86322--86734	55	7.5	55	82	3	431	26	16	25	30	1.97
86324--86734	110	3.8	109	83	3	477	27	16	25	30	1.97
87597--87781	84	2.2	83	83	4	230	34	25	17	21	1.96

Tables:   1

The End!