genome.fa.s6185.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006185.1 Hibiscus syriacus cultivar Beakdansim tig00014713_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119557

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18728--18760	16	2.0	17	94	5	59	42	21	0	36	1.53
19011--19035	12	2.1	12	100	0	50	32	0	28	40	1.57
19842--19919	39	2.0	39	100	0	156	41	20	17	20	1.91
22942--23122	99	1.8	99	90	0	290	33	22	13	29	1.93
23327--23364	20	1.9	20	100	0	76	34	18	21	26	1.96
24261--24303	11	3.9	11	78	0	50	55	23	4	16	1.59
30329--30375	13	3.6	13	82	0	58	70	10	2	17	1.26
32616--32649	9	3.9	9	84	7	52	61	2	0	35	1.11
32612--32650	17	2.4	17	95	4	71	61	5	0	33	1.18
37596--37638	6	7.2	6	83	0	59	30	13	39	16	1.87
37596--37644	18	2.7	18	90	0	62	28	14	42	14	1.84
37599--37650	24	2.2	24	89	0	77	26	15	46	11	1.80
37875--37903	12	2.5	12	94	5	51	62	10	0	27	1.28
37771--37955	75	2.5	75	81	7	214	52	14	5	27	1.62
47060--47098	18	2.2	17	90	4	60	17	20	33	28	1.96
47422--47522	18	5.6	18	73	9	89	43	1	19	34	1.63
47423--47540	36	3.3	36	81	0	155	39	1	22	36	1.64
47441--47541	18	5.6	18	68	9	53	38	0	22	37	1.61
47838--47907	35	2.1	34	84	7	90	40	7	7	45	1.59
50649--50684	18	2.0	18	100	0	72	16	50	22	11	1.77
50635--50671	13	2.8	13	87	0	56	16	45	21	16	1.84
53175--53265	24	3.8	24	83	2	112	26	17	18	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53343--53417	35	2.1	35	97	0	141	9	29	28	33	1.88
54989--55059	30	2.4	30	81	9	83	40	7	15	36	1.74
55435--55540	54	2.0	54	84	3	142	33	28	16	22	1.95
56698--56737	18	2.3	17	83	8	53	20	17	32	30	1.95
58711--58786	13	6.2	12	71	15	57	67	11	2	18	1.34
61016--61049	9	3.9	9	84	7	52	64	2	0	32	1.08
69162--69857	347	2.0	347	98	1	1353	36	14	14	34	1.87
71628--71670	21	1.9	24	86	13	65	34	25	16	23	1.95
77150--77202	5	10.6	5	100	0	106	18	39	0	41	1.51
77560--77621	21	3.0	21	81	6	56	59	3	0	37	1.13
77578--77611	16	2.1	17	88	5	52	64	0	0	35	0.94
78983--79026	21	2.1	21	91	0	70	29	0	15	54	1.42
79865--79905	10	4.2	10	87	3	57	46	0	0	53	1.00
82240--82401	50	2.9	59	80	13	182	41	1	9	46	1.45
82286--82412	50	2.6	49	93	2	218	44	1	10	43	1.47
82299--82377	25	3.2	25	66	20	74	45	0	7	46	1.31
82732--82812	24	3.3	24	68	14	58	41	1	8	48	1.42
82769--82936	59	2.8	59	95	0	291	41	1	8	48	1.45
85441--85486	23	2.0	23	86	0	65	32	26	23	17	1.97
85451--85496	23	2.0	23	82	0	56	32	23	21	21	1.98
85714--85746	16	2.0	17	88	5	50	36	24	6	33	1.80
87239--87294	21	2.6	22	84	13	73	23	30	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88665--88710	13	3.5	13	96	3	83	30	0	21	47	1.51
88689--88839	64	2.4	64	94	3	261	29	1	16	52	1.52
92306--92434	20	6.5	20	73	16	99	34	13	21	30	1.93
92306--92436	40	3.3	40	80	9	144	33	13	21	31	1.92
93679--93784	34	3.1	34	90	2	158	49	1	3	45	1.31
94148--94293	41	3.5	40	69	10	114	26	22	17	33	1.96
94177--94294	21	5.7	20	69	9	76	26	22	16	34	1.95
94540--94606	21	3.2	21	66	6	55	23	35	20	19	1.95
94488--94606	42	2.8	42	81	5	107	22	36	18	22	1.95
95958--95993	14	2.6	14	95	0	63	30	0	25	44	1.54
96100--96158	19	3.4	19	71	22	65	45	16	22	15	1.84
96100--96193	33	2.8	33	87	3	127	44	21	20	13	1.86
96167--96208	19	2.2	19	100	0	84	38	28	16	16	1.91
96204--96321	19	6.7	19	66	19	76	13	22	20	43	1.87
96208--96301	33	2.8	33	95	0	161	12	23	19	44	1.85
96295--96367	20	3.6	20	68	17	60	24	17	24	32	1.97
98624--98658	13	2.8	13	95	4	63	0	25	0	74	0.82
98830--98883	24	2.2	24	90	0	81	40	20	16	22	1.91
99522--99567	21	2.2	21	84	3	58	39	15	23	21	1.92
99553--99615	20	3.0	22	77	13	78	41	23	17	17	1.90
99598--99674	20	3.8	20	83	6	93	28	25	18	27	1.98
99954--100027	19	4.5	16	83	16	66	13	20	18	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99950--100017	19	3.8	19	87	12	101	13	22	17	47	1.82
101596--101686	42	2.2	41	83	9	123	23	15	39	21	1.91
102484--102531	18	2.7	18	90	0	78	16	12	43	27	1.84
103852--103890	20	2.0	20	94	0	69	51	17	15	15	1.77
104174--104217	22	2.0	22	86	0	61	18	18	40	22	1.91
104378--104478	20	5.0	20	76	7	96	24	15	26	32	1.96
104359--104490	41	3.2	41	77	2	140	22	14	24	38	1.91
104517--104569	21	2.5	22	78	6	65	33	16	26	22	1.96
114928--115040	54	2.1	54	86	3	156	27	14	25	32	1.94

Tables:   1

The End!