genome.fa.s6186.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006186.1 Hibiscus syriacus cultivar Beakdansim tig00014724_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69172

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5421--5571	41	3.7	41	86	5	209	36	13	17	33	1.88
17001--17034	18	2.0	16	88	11	50	14	0	20	64	1.28
17346--17388	23	1.9	23	85	4	61	30	30	16	23	1.96
18813--18857	21	2.1	22	83	4	56	26	20	17	35	1.95
18878--18929	19	2.7	19	93	0	86	30	17	30	21	1.96
19869--19917	18	2.7	18	84	6	64	18	20	30	30	1.96
19887--19945	28	2.1	28	81	6	66	20	20	30	28	1.97
23210--23259	25	2.0	25	92	0	82	48	12	18	22	1.80
23762--23889	21	6.0	21	70	20	97	21	24	25	28	1.99
23807--23914	28	3.5	28	70	24	90	20	22	27	29	1.98
23760--23914	67	2.3	67	96	0	292	20	23	27	29	1.99
37536--37570	13	2.7	13	100	0	70	65	11	0	22	1.24
43831--44322	66	7.5	66	78	10	456	39	13	21	26	1.89
43934--44041	30	3.4	31	70	22	89	38	11	23	26	1.88
43831--44324	132	3.8	132	87	2	678	39	12	21	26	1.89
44105--44147	21	2.1	20	82	4	50	44	13	16	25	1.85
43831--44329	198	2.5	196	81	8	550	39	12	21	26	1.89
44802--44835	16	2.1	16	94	0	59	23	0	26	50	1.50
45847--45881	2	17.5	2	100	0	70	51	48	0	0	1.00
45881--45906	2	13.0	2	100	0	52	50	0	0	50	1.00
51872--51951	31	2.6	30	78	9	81	27	31	28	12	1.93
51881--51955	32	2.4	31	82	6	89	32	30	25	12	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54493--54540	3	16.0	3	100	0	96	33	0	0	66	0.92
58462--58536	3	25.0	3	97	0	141	32	0	1	66	1.00
58693--58810	54	2.2	54	80	3	130	43	27	13	15	1.84
61358--61393	17	2.1	17	94	0	63	25	11	25	38	1.88
65629--65671	15	2.9	15	85	0	50	46	9	23	20	1.79

Tables:   1

The End!