Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006187.1 Hibiscus syriacus cultivar Beakdansim tig00014725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44136

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2321--2350
15
2.1
14
93
6
51
70
0
0
30
0.88
3037--3132
23
4.2
23
75
10
81
41
12
15
30
1.84
6822--6867
22
2.1
21
88
8
65
63
2
0
34
1.07
14694--14787
49
1.9
50
89
8
149
38
2
2
57
1.23
14847--14918
26
2.7
27
77
14
78
41
5
2
50
1.40
20329--20363
18
1.9
18
94
0
61
25
20
28
25
1.99
22043--22083
18
2.3
18
91
4
66
63
2
4
29
1.28
23529--23559
16
1.9
16
93
0
53
45
16
9
29
1.79
23723--23761
14
2.7
14
88
11
53
35
2
5
56
1.35
23683--23826
71
2.0
70
88
9
213
36
4
2
57
1.30
23765--23810
19
2.5
20
82
13
62
34
6
0
58
1.24
23790--23826
13
2.7
14
84
15
51
37
2
0
59
1.12
24389--24450
23
2.7
23
92
0
106
35
27
11
25
1.90
27361--27469
15
7.0
15
72
18
71
45
1
1
50
1.23
27395--27513
31
3.7
32
75
13
93
48
1
3
46
1.28
27463--27521
31
2.0
29
93
6
100
52
1
5
40
1.33
27631--27707
21
3.7
20
78
5
73
49
3
6
40
1.47
27516--27728
117
1.8
117
80
8
254
47
4
6
40
1.50
27738--27868
57
2.3
55
81
10
156
43
8
7
40
1.63
27750--27815
22
3.0
21
81
12
80
45
6
7
40
1.57
27791--27831
15
2.6
16
88
7
66
41
7
7
43
1.60
27804--27842
20
2.0
19
90
5
60
43
7
2
46
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28047--28120
37
2.1
36
84
5
96
40
10
9
39
1.73
28329--28467
2
72.0
2
65
19
55
44
6
2
46
1.41
28435--28474
21
1.9
21
85
10
55
40
10
5
45
1.60
28509--28540
15
2.1
15
94
0
55
40
3
6
50
1.43
28368--28536
82
2.0
83
89
3
261
43
6
2
47
1.42
28509--28598
15
6.1
14
68
22
51
45
5
4
44
1.47
28553--28615
18
3.4
20
83
14
82
47
1
4
46
1.33
30208--30257
24
2.0
25
84
3
66
62
0
0
38
0.96
30613--31073
226
2.0
226
83
5
567
44
13
9
32
1.76
31627--31658
2
16.0
2
93
0
55
46
0
0
53
1.00
32235--32375
59
2.3
60
85
7
180
19
27
29
23
1.98
32583--32661
34
2.4
33
83
8
90
41
0
0
58
0.98
32573--32661
34
2.7
31
79
6
88
41
0
1
57
1.06
32637--32699
15
4.4
14
75
17
58
34
1
1
61
1.15
34448--34499
21
2.5
21
82
17
72
17
32
26
23
1.96
35021--35127
34
3.1
34
86
0
151
53
5
5
35
1.48
35542--36324
127
6.2
127
93
0
1307
33
20
23
22
1.97

Tables:   1

The End!