genome.fa.s6188.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006188.1 Hibiscus syriacus cultivar Beakdansim tig00014726_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96270

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1344--1546	62	3.3	62	92	2	313	35	25	6	32	1.82
2950--3123	84	2.1	84	95	0	312	29	16	12	41	1.85
5377--5432	24	2.3	24	82	11	69	32	1	1	64	1.14
5380--5432	25	2.1	25	83	13	65	30	1	1	66	1.13
5495--5535	21	2.0	21	85	0	55	36	19	9	34	1.85
26292--26433	44	3.2	44	92	0	239	42	11	20	24	1.86
27820--27885	30	2.2	31	97	2	125	46	18	12	22	1.81
30982--31200	39	6.0	39	72	16	175	44	4	7	43	1.51
31070--31135	31	2.2	29	83	5	87	45	4	6	43	1.49
30996--31259	103	2.5	102	80	11	306	44	4	7	43	1.52
30987--31207	36	6.2	35	78	12	193	44	4	7	43	1.52
31173--31229	29	2.0	29	89	0	87	42	7	8	42	1.63
31137--31273	66	2.1	65	83	4	168	44	4	6	44	1.50
31320--31371	20	2.5	21	90	6	79	19	7	0	73	1.07
32644--32675	3	10.7	3	93	0	55	28	0	3	68	1.04
33167--33191	6	4.2	6	100	0	50	52	0	0	48	1.00
37521--38905	84	16.7	84	84	3	1707	31	24	18	25	1.98
37539--38905	415	3.3	413	86	2	1692	31	24	18	25	1.98
37523--38905	331	4.2	331	86	2	1825	31	24	18	25	1.98
39473--39515	2	22.0	2	80	4	52	51	4	0	44	1.22
39502--39845	35	9.8	36	71	17	185	45	3	7	43	1.49
39510--39787	35	7.8	36	75	14	195	44	3	8	43	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39547--39792	35	7.0	33	77	15	196	44	3	8	43	1.51
39508--39691	71	2.5	72	87	7	248	45	2	8	44	1.48
39724--39809	29	2.8	29	73	19	75	39	4	10	45	1.59
39598--39798	102	2.0	104	83	7	259	45	3	7	42	1.52
39584--39831	102	2.4	99	75	16	240	45	4	7	42	1.51
39885--39955	36	1.9	37	83	13	94	19	5	0	74	1.01
39894--39947	21	2.5	20	82	5	63	22	5	0	72	1.05
41147--41271	6	19.8	6	75	14	58	17	4	4	74	1.13
41197--41244	3	16.0	3	91	0	78	29	0	4	66	1.10
41197--41241	18	2.5	18	100	0	90	28	0	4	66	1.11
44557--44594	20	1.9	20	88	0	58	57	5	0	36	1.21
48357--48399	18	2.5	17	85	7	61	25	4	2	67	1.22
48904--48937	2	17.0	2	100	0	68	50	0	0	50	1.00
53121--53656	183	2.9	183	94	0	950	27	20	21	31	1.98
54836--54952	36	3.1	36	72	4	108	27	17	15	40	1.89
54796--54955	72	2.2	74	84	7	202	28	17	11	42	1.84
54975--55358	104	3.9	104	83	9	439	29	20	12	37	1.90
55258--55333	36	2.1	36	90	0	116	22	21	15	40	1.90
55533--56590	106	10.0	106	93	0	1707	33	25	18	22	1.96
57133--57229	37	2.6	37	83	0	122	43	15	10	30	1.80
57881--57938	15	3.9	16	71	15	61	20	1	0	77	0.86
57888--57936	8	5.8	8	79	11	53	18	2	0	79	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57815--57938	48	2.7	43	77	17	108	27	3	1	67	1.15
58126--58177	2	26.0	2	100	0	104	50	0	0	50	1.00
61276--61330	20	2.8	20	91	0	92	32	23	5	38	1.78
61858--61912	23	2.4	24	79	14	62	52	1	0	45	1.11
71721--71759	21	1.9	20	84	5	51	28	2	0	69	1.02
75366--75410	22	2.1	22	83	4	56	40	11	2	46	1.52
78768--78835	24	3.0	22	75	23	68	44	1	2	51	1.25
80717--80809	42	2.2	43	88	1	134	50	13	4	31	1.61
80727--80791	22	3.0	22	65	17	55	52	13	6	27	1.64
81804--81868	24	2.7	24	97	2	121	18	13	35	32	1.90
86404--86444	18	2.3	18	80	15	50	17	12	7	63	1.50
92913--92949	13	3.0	13	92	7	60	32	0	5	62	1.18
93384--93437	24	2.2	25	81	15	69	50	14	18	16	1.79

Tables:   1

The End!