Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006189.1 Hibiscus syriacus cultivar Beakdansim tig00014728_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 980383
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
File 1 of 7
Found at i:2445 original size:45 final size:49
Alignment explanation
Indices: 2391--2495 Score: 112
Period size: 50 Copynumber: 2.2 Consensus size: 49
2381 TATACGTTTA
* *
2391 AAGACACTAACAAATTAATATTTTT-TAT-AT-T-TA-ATAACTTAAACT
1 AAGAAACTAACAAACTAAT-TTTTTATATAATATATATATAACTTAAACT
**
2436 AAGAAACTAATTAACTAATTTTTTATATAATATAATATATAACTTAAACT
1 AAGAAACTAACAAACTAATTTTTTATATAATAT-ATATATAACTTAAACT
*
2486 AATAAACTAA
1 AAGAAACTAA
2496 TATAATATAA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
44 5 0.10
45 18 0.37
46 2 0.04
47 1 0.02
49 2 0.04
50 21 0.43
ACGTcount: A:0.50, C:0.10, G:0.02, T:0.38
Consensus pattern (49 bp):
AAGAAACTAACAAACTAATTTTTTATATAATATATATATAACTTAAACT
Found at i:2503 original size:28 final size:30
Alignment explanation
Indices: 2463--2525 Score: 103
Period size: 28 Copynumber: 2.2 Consensus size: 30
2453 ATTTTTTATA
*
2463 TAATATAATATATAACTTAAACTAATAAAC
1 TAATATAATATATAACTTAAACTAACAAAC
2493 TAATAT-A-ATATAACTTAAACTAACAAAC
1 TAATATAATATATAACTTAAACTAACAAAC
2521 TAATA
1 TAATA
2526 ATTTATACTA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 25 0.78
29 1 0.03
30 6 0.19
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (30 bp):
TAATATAATATATAACTTAAACTAACAAAC
Found at i:2532 original size:28 final size:28
Alignment explanation
Indices: 2467--2532 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
2457 TTTATATAAT
*
2467 ATAATATATAACTTAAACTAATAAACTA
1 ATAATATATAACTTAAACTAACAAACTA
2495 AT-ATAATATAACTTAAACTAACAAACTA
1 ATAAT-ATATAACTTAAACTAACAAACTA
*
2523 ATAATTTATA
1 ATAATATATA
2533 CTAACAAACT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 2 0.06
28 30 0.88
29 2 0.06
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (28 bp):
ATAATATATAACTTAAACTAACAAACTA
Found at i:2535 original size:21 final size:21
Alignment explanation
Indices: 2502--2550 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
2492 CTAATATAAT
2502 ATAACTTAAACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
* *
2523 ATAATTTATACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
2544 ATTAACT
1 A-TAACT
2551 AGATTTTAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (21 bp):
ATAACTTAAACTAACAAACTA
Found at i:3097 original size:20 final size:20
Alignment explanation
Indices: 3072--3144 Score: 58
Period size: 20 Copynumber: 3.4 Consensus size: 20
3062 CCATGCACAG
3072 CATGCATCCCACAACTCCCC
1 CATGCATCCCACAACTCCCC
**
3092 CATGCATTCCCACGTC-CCATGCAC
1 CATGCA-TCCCACAACTCC---C-C
3116 AGCATGCATCCCACAACTCCCC
1 --CATGCATCCCACAACTCCCC
3138 CATGCAT
1 CATGCAT
3145 GCTCCAATAC
Statistics
Matches: 41, Mismatches: 4, Indels: 16
0.67 0.07 0.26
Matches are distributed among these distances:
20 15 0.37
21 7 0.17
22 1 0.02
23 2 0.05
24 1 0.02
25 7 0.17
26 8 0.20
ACGTcount: A:0.25, C:0.48, G:0.10, T:0.18
Consensus pattern (20 bp):
CATGCATCCCACAACTCCCC
Found at i:3111 original size:46 final size:46
Alignment explanation
Indices: 3052--3144 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
3042 CCATGCACAG
3052 TTCCCACGTCCCATGCACAGCATGCATCCCACAACTCCCCCATGCA
1 TTCCCACGTCCCATGCACAGCATGCATCCCACAACTCCCCCATGCA
3098 TTCCCACGTCCCATGCACAGCATGCATCCCACAACTCCCCCATGCA
1 TTCCCACGTCCCATGCACAGCATGCATCCCACAACTCCCCCATGCA
3144 T
1 T
3145 GCTCCAATAC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.24, C:0.47, G:0.11, T:0.18
Consensus pattern (46 bp):
TTCCCACGTCCCATGCACAGCATGCATCCCACAACTCCCCCATGCA
Found at i:3246 original size:29 final size:29
Alignment explanation
Indices: 3204--3323 Score: 222
Period size: 29 Copynumber: 4.1 Consensus size: 29
3194 AATACCACAC
*
3204 AGGTCGCTCGGATGCCATGGCGACCTCCA
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
*
3233 AGGTCGTCCGGATGCCATGGCGACCTCCA
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
3262 AGGTCGCCCGGATGCCATGGCGACCTCCA
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
3291 AGGTCGCCCGGATGCCATGGCGACCTCCA
1 AGGTCGCCCGGATGCCATGGCGACCTCCA
3320 AGGT
1 AGGT
3324 TACTGTAGAA
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 88 1.00
ACGTcount: A:0.17, C:0.35, G:0.32, T:0.16
Consensus pattern (29 bp):
AGGTCGCCCGGATGCCATGGCGACCTCCA
Found at i:17311 original size:41 final size:41
Alignment explanation
Indices: 17249--17343 Score: 181
Period size: 41 Copynumber: 2.3 Consensus size: 41
17239 TCATTATCAA
17249 AATTGAGCATTATCAAGAAATGACAATTTACAATGCTAGTTG
1 AATT-AGCATTATCAAGAAATGACAATTTACAATGCTAGTTG
17291 AATTAGCATTATCAAGAAATGACAATTTACAATGCTAGTTG
1 AATTAGCATTATCAAGAAATGACAATTTACAATGCTAGTTG
17332 AATTAGCATTAT
1 AATTAGCATTAT
17344 ACAATACTCA
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
41 49 0.92
42 4 0.08
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.33
Consensus pattern (41 bp):
AATTAGCATTATCAAGAAATGACAATTTACAATGCTAGTTG
Found at i:18071 original size:3 final size:3
Alignment explanation
Indices: 18063--18170 Score: 153
Period size: 3 Copynumber: 36.0 Consensus size: 3
18053 TTTGATTTAT
* * *
18063 TTA TTA TTA TTA TTA TTA CTA TAA TTA TTA TTA TTA TTA TTA TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
18111 TAA TTA TTA TTA TTA TTA TAA TTA TTA TTA TTA TAA ATA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
18159 TTA TTA TTA TTA
1 TTA TTA TTA TTA
18171 ATATATATAT
Statistics
Matches: 91, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 91 1.00
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:19168 original size:21 final size:19
Alignment explanation
Indices: 19139--19177 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
19129 ACTAAATCGA
19139 ATCTATAAACCTTTTAATTTG
1 ATCTATAAA--TTTTAATTTG
*
19160 ATCTCTAAATTTTAATTT
1 ATCTATAAATTTTAATTT
19178 TATTTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
21 8 0.47
ACGTcount: A:0.33, C:0.13, G:0.03, T:0.51
Consensus pattern (19 bp):
ATCTATAAATTTTAATTTG
Found at i:19569 original size:26 final size:23
Alignment explanation
Indices: 19540--19592 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 23
19530 AAATATATAT
*
19540 AATAAATAATAATTTATATTTTTTTC
1 AATAAAT--TAATTTA-ATATTTTTC
*
19566 AATAAATTATTTTAATATTTTTC
1 AATAAATTAATTTAATATTTTTC
19589 AATA
1 AATA
19593 TCGAAGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 12 0.48
24 6 0.24
26 7 0.28
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (23 bp):
AATAAATTAATTTAATATTTTTC
Found at i:23621 original size:15 final size:15
Alignment explanation
Indices: 23601--23632 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
23591 ATCAATACCT
23601 TTTTGCATACATGCA
1 TTTTGCATACATGCA
*
23616 TTTTGCATACATTCA
1 TTTTGCATACATGCA
23631 TT
1 TT
23633 ATTCATTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (15 bp):
TTTTGCATACATGCA
Found at i:30980 original size:9 final size:9
Alignment explanation
Indices: 30961--31014 Score: 63
Period size: 10 Copynumber: 5.7 Consensus size: 9
30951 CTTGAAGAGA
30961 AAAAGAAAAG
1 AAAA-AAAAG
30971 AAAAAAAAG
1 AAAAAAAAG
*
30980 AGAGAAAAAG
1 A-AAAAAAAG
*
30990 AAAAAAGAG
1 AAAAAAAAG
30999 AAAAAAGAAG
1 AAAAAA-AAG
31009 AAAAAA
1 AAAAAA
31015 GGGGGGTCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
9 18 0.47
10 20 0.53
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:30985 original size:24 final size:25
Alignment explanation
Indices: 30956--31013 Score: 84
Period size: 26 Copynumber: 2.4 Consensus size: 25
30946 TTATGCTTGA
30956 AGAGAAAAAG-AAAAGAAAAAAAAG
1 AGAGAAAAAGAAAAAGAAAAAAAAG
*
30980 AGAGAAAAAGAAAAAAGAGAAAAAAG
1 AGAGAAAAAG-AAAAAGAAAAAAAAG
31006 A-AGAAAAA
1 AGAGAAAAA
31014 AGGGGGGTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
24 10 0.32
25 7 0.23
26 14 0.45
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (25 bp):
AGAGAAAAAGAAAAAGAAAAAAAAG
Found at i:30987 original size:10 final size:9
Alignment explanation
Indices: 30966--31015 Score: 66
Period size: 9 Copynumber: 5.6 Consensus size: 9
30956 AGAGAAAAAG
*
30966 AAAAGAAAA
1 AAAAGAGAA
*
30975 AAAAGAGAG
1 AAAAGAGAA
30984 AAAA-AGAA
1 AAAAGAGAA
30992 AAAAGAGAA
1 AAAAGAGAA
31001 AAAAGAAGAA
1 AAAAG-AGAA
31011 AAAAG
1 AAAAG
31016 GGGGGTCAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
8 7 0.19
9 20 0.56
10 9 0.25
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (9 bp):
AAAAGAGAA
Found at i:30990 original size:19 final size:18
Alignment explanation
Indices: 30966--31015 Score: 68
Period size: 19 Copynumber: 2.8 Consensus size: 18
30956 AGAGAAAAAG
30966 AAAAGAAAAAAAAGAGAGA
1 AAAAGAAAAAAAAGAGA-A
30985 AAAAG--AAAAAAGAGAA
1 AAAAGAAAAAAAAGAGAA
31001 AAAAGAAGAAAAAAG
1 AAAAGAA-AAAAAAG
31016 GGGGGTCAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
16 6 0.21
17 10 0.36
19 12 0.43
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (18 bp):
AAAAGAAAAAAAAGAGAA
Found at i:30993 original size:15 final size:14
Alignment explanation
Indices: 30960--31004 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 14
30950 GCTTGAAGAG
*
30960 AAAAAGAAAAGAAAA
1 AAAAAGAGAA-AAAA
30975 AAAAGAGAGAAAAAGA
1 AAAA-AGAGAAAAA-A
30991 AAAAAGAGAAAAAA
1 AAAAAGAGAAAAAA
31005 GAAGAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 1 0.04
15 16 0.59
16 10 0.37
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (14 bp):
AAAAAGAGAAAAAA
Found at i:30995 original size:17 final size:16
Alignment explanation
Indices: 30955--31012 Score: 66
Period size: 16 Copynumber: 3.6 Consensus size: 16
30945 ATTATGCTTG
*
30955 AAGAGAAAAAGA-AAAG
1 AAGA-AAAAAGAGAAAA
30971 AA-AAAAAAGAGAGAAA
1 AAGAAAAAAGAGA-AAA
30987 AAGAAAAAAGAGAAAA
1 AAGAAAAAAGAGAAAA
31003 AAGAAGAAAA
1 AAGAA-AAAA
31013 AAGGGGGGTC
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 7 0.19
15 2 0.05
16 14 0.38
17 14 0.38
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (16 bp):
AAGAAAAAAGAGAAAA
Found at i:32281 original size:83 final size:83
Alignment explanation
Indices: 32157--32545 Score: 663
Period size: 83 Copynumber: 4.7 Consensus size: 83
32147 ACTGGAACAA
32157 ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACC
1 ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACC
* *
32222 AATCATTAAATTTGAAAG
66 AGTCATTGAATTTGAAAG
* * *
32240 ATAAATGTGATCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAAAC
1 ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACC
32305 AGTCATTGAATTTGAAAG
66 AGTCATTGAATTTGAAAG
*
32323 ATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACC
1 ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACC
*
32388 AGTTATTGAATTTGAAAG
66 AGTCATTGAATTTGAAAG
32406 ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACC
1 ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACC
* *
32471 AGTTATTGAATTTGGAAG
66 AGTCATTGAATTTGAAAG
* *
32489 AGGAATGTGC-CAATAGCATCTTCTGGAAGTATTCTTTGAGTTATCTGATCTGGTTTG
1 ATGAATGTGCTC-ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTG
32546 ATATGAAACC
Statistics
Matches: 291, Mismatches: 14, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
82 1 0.00
83 290 1.00
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.38
Consensus pattern (83 bp):
ATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACC
AGTCATTGAATTTGAAAG
Found at i:33794 original size:113 final size:112
Alignment explanation
Indices: 33513--33907 Score: 537
Period size: 113 Copynumber: 3.5 Consensus size: 112
33503 AATGTTAGTT
* * *
33513 AAGTTCATAATGAGAAGAACTCATCTGAAGAATGAAGAAGAAATTCATAATGAGAAGAATTTGTT
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
33578 CAACCTTTTGCTCAAATCCATCACTTGATGGATTAGCTTTGCCAGAG-
66 CAACCTTTTGCTCAAATCCATCA-TTGATGGATTAGCTTTGCCAGAGA
* * *
33625 AAGTTCATAATTAGAAGAACTCATCTGAAGAAGGAAGAAAAAGTTCATAATGAGAAGAGCTTGTT
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
* *
33690 CAACCTTTTGCTCAAATCCATCATTCGATGGATCAGCTTTTCCAGAGA
66 CAACCTTTTGCTCAAATCCATCATT-GATGGATTAGCTTTGCCAGAGA
33738 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
* * * * * * *
33803 CAACCTTTTGTTTAAATTCATCAATTGATGGATTAACATGGCCAGATA
66 CAACCTTTTGCTCAAATCCATC-ATTGATGGATTAGCTTTGCCAGAGA
* * * ** *
33851 GAGTTCATAATCAGAAGAACTCGTCAT-CTGAA-GAAGAAG-AGTTCATAATGAGTAGAA
1 AAGTTCATAATGAGAAGAACTCATC-TGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAA
33908 TTCGTCATCT
Statistics
Matches: 253, Mismatches: 26, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
111 19 0.08
112 108 0.43
113 122 0.48
114 4 0.02
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.27
Consensus pattern (112 bp):
AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
CAACCTTTTGCTCAAATCCATCATTGATGGATTAGCTTTGCCAGAGA
Found at i:33892 original size:38 final size:41
Alignment explanation
Indices: 33850--33950 Score: 136
Period size: 38 Copynumber: 2.5 Consensus size: 41
33840 ATGGCCAGAT
*
33850 AGAGTTCATAATCAGAAGAACTCGTCATCTGAAG-A-A-GA
1 AGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGATGA
* *
33888 AGAGTTCATAATGAGTAGAATTCGTCATCTGAAGAATGATGA
1 AGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAA-GATGA
33930 AGAAGTTCATAATGAGAAGAA
1 AG-AGTTCATAATGAGAAGAA
33951 TTTGTTCAAC
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
38 31 0.57
39 1 0.02
41 1 0.02
42 4 0.07
43 17 0.31
ACGTcount: A:0.43, C:0.11, G:0.23, T:0.24
Consensus pattern (41 bp):
AGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGATGA
Found at i:33937 original size:154 final size:152
Alignment explanation
Indices: 33733--34065 Score: 424
Period size: 154 Copynumber: 2.2 Consensus size: 152
33723 CAGCTTTTCC
33733 AGAGAA-AGTTCATAATGAGAAGAA--CTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAG
1 AGAGAAGAGTTCATAATGAGAAGAATTCTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAG
* *
33795 AACTTGTTCAACCTTTTGTTTAAATTCATCAATTGATGGATTAACATGGCCAGATAGAGTTCATA
66 AACTTGTTCAACCTTTTGCTCAAATTCATCAATTGATGGATTAACATGGCCAGATAGAGTTCATA
33860 ATCAGAAGAACTCGTCATCTGAAG-
131 ATCAGAAGAA--C-TCATCTGAAGA
* * *
33884 A-AGAAGAGTTCATAATGAGTAGAATTCGTCATCTGAAGAATGATGAAGAAGTTCATAATGAGAA
1 AGAGAAGAGTTCATAATGAGAAGAATTC-TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAA
* * * * * ** * **
33948 GAATTTGTTCAACCTTTTGCTCAAATTTATCACTTGATGGATTATCTTTTCCAGTTCTAGTTCAT
65 GAACTTGTTCAACCTTTTGCTCAAATTCATCAATTGATGGATTAACATGGCCAGATAGAGTTCAT
*
34013 AATGAGAAGAACTCATCTGAAGA
130 AATCAGAAGAACTCATCTGAAGA
34036 AGGATGAAGAAGTTCATAATGAGAAGAATT
1 A-GA-GAAG-AGTTCATAATGAGAAGAATT
34066 TGTTCAACAT
Statistics
Matches: 156, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
150 4 0.03
151 28 0.18
152 2 0.01
153 1 0.01
154 98 0.63
155 4 0.03
156 19 0.12
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.29
Consensus pattern (152 bp):
AGAGAAGAGTTCATAATGAGAAGAATTCTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAG
AACTTGTTCAACCTTTTGCTCAAATTCATCAATTGATGGATTAACATGGCCAGATAGAGTTCATA
ATCAGAAGAACTCATCTGAAGA
Found at i:34047 original size:113 final size:113
Alignment explanation
Indices: 33889--34607 Score: 1028
Period size: 113 Copynumber: 6.3 Consensus size: 113
33879 TGAAGAAGAA
* * *
33889 GAGTTCATAATGAGTAGAATTCGTCATCTGAAGAATGATGAAGAAGTTCATAATGAGAAGAATTT
1 GAGTTCATAATGAGAAGAA--C-TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTT
**
33954 GTTCAACCTTTTGCTCAAATTTATCACTTGATGGATTATCTTTTCCAGTTC
63 GTTCAACCTTTTGCTCAAATCCATCACTTGATGGATTATCTTTTCCAGTTC
* *
34005 TAGTTCATAATGAGAAGAACTCATCTGAAGAAGGATGAAGAAGTTCATAATGAGAAGAATTTGTT
1 GAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
* *
34070 CAACATTTTGCTCAAATCTATCACTTGATGGATTATCTTTTCCAGTTC
66 CAACCTTTTGCTCAAATCCATCACTTGATGGATTATCTTTTCCAGTTC
34118 GAGTTCATAATGAGAAGAACTCATCTGAAGAATGAGAAGAAGAAGTTCATAATGAGAAGAATTTG
1 GAGTTCATAATGAGAAGAACTCATCTGAAGAA-G-GAAGAAGAAGTTCATAATGAGAAGAATTTG
*
34183 TTCAACCTTTTGCTCAAATCTATCACTTGATGGATTATCTTTTCCAGTTC
64 TTCAACCTTTTGCTCAAATCCATCACTTGATGGATTATCTTTTCCAGTTC
34233 GAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
1 GAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
* **
34298 CAACCTTTTGCTCAAATCCATCACTTGATGGATTAGCTTTTCCAG-AA
66 CAACCTTTTGCTCAAATCCATCACTTGATGGATTATCTTTTCCAGTTC
* *
34345 GAAGTTCATAATGAGAAGAACTCATTTAAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
1 G-AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGT
* * * * ***
34410 TCAGCTTTTTGCTCAAATCCATCACTTGATGGGTCAGT-TTTTCCAGAGA
65 TCAACCTTTTGCTCAAATCCATCACTTGATGGATTA-TCTTTTCCAGTTC
* *
34459 AAGTTCATAATGAGAAGAACTCATCTGAAGAATGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
1 GAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
* * * * * * * ***
34524 CAACCTTTTGTTTAAATTCATCAATTGATGGATTAACATTGCCAGGAA
66 CAACCTTTTGCTCAAATCCATCACTTGATGGATTATCTTTTCCAGTTC
34572 GAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAG
1 GAGTTCATAATGAGAAGAA--C-TCATCTGAAGAAG
34608 AATTTGTTCA
Statistics
Matches: 555, Mismatches: 39, Indels: 18
0.91 0.06 0.03
Matches are distributed among these distances:
112 1 0.00
113 410 0.74
114 4 0.01
115 111 0.20
116 29 0.05
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (113 bp):
GAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
CAACCTTTTGCTCAAATCCATCACTTGATGGATTATCTTTTCCAGTTC
Found at i:34175 original size:228 final size:226
Alignment explanation
Indices: 33885--34593 Score: 1057
Period size: 228 Copynumber: 3.1 Consensus size: 226
33875 CATCTGAAGA
* *
33885 AGAAGAGTTCATAATGAGTAGAATTCGTCATCTGAAGAAT-GATGAAGAAGTTCATAATGAGAAG
1 AGAAGAGTTCATAATGAGAAGAA--C-TCATCTGAAGAATGGAAGAAGAAGTTCATAATGAGAAG
* *
33949 AATTTGTTCAACCTTTTGCTCAAATTTATCACTTGATGGATTATCTTTTCCAGTTCTAGTTCATA
63 AATTTGTTCAACCTTTTGCTCAAATCTATCACTTGATGGATTATCTTTTCCAGTTCAAGTTCATA
* *
34014 ATGAGAAGAACTCATCTGAAGAAGGATGAAGAAGTTCATAATGAGAAGAATTTGTTCAACATTTT
128 ATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
*
34079 GCTCAAATCTATCACTTGATGGATTATCTTTTCC
193 GCTCAAATCTATCACTTGATGGATTAACTTTTCC
**
34113 AGTTCGAGTTCATAATGAGAAGAACTCATCTGAAGAATGAGAAGAAGAAGTTCATAATGAGAAGA
1 AG-AAGAGTTCATAATGAGAAGAACTCATCTGAAGAATG-GAAGAAGAAGTTCATAATGAGAAGA
*
34178 ATTTGTTCAACCTTTTGCTCAAATCTATCACTTGATGGATTATCTTTTCCAGTTCGAGTTCATAA
64 ATTTGTTCAACCTTTTGCTCAAATCTATCACTTGATGGATTATCTTTTCCAGTTCAAGTTCATAA
34243 TGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
129 TGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
* *
34308 CTCAAATCCATCACTTGATGGATTAGCTTTTCC
194 CTCAAATCTATCACTTGATGGATTAACTTTTCC
* *
34341 AGAAGAAGTTCATAATGAGAAGAACTCATTTAAAGAA-GGAAGAAGAAGTTCATAATGAGAAGAA
1 AGAAG-AGTTCATAATGAGAAGAACTCATCTGAAGAATGGAAGAAGAAGTTCATAATGAGAAGAA
* * * * * ***
34405 TTTGTTCAGCTTTTTGCTCAAATCCATCACTTGATGGGTCAGT-TTTTCCAGAGAAAGTTCATAA
65 TTTGTTCAACCTTTTGCTCAAATCTATCACTTGATGGATTA-TCTTTTCCAGTTCAAGTTCATAA
*
34469 TGAGAAGAACTCATCTGAAGAATGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
129 TGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTG
* * * * *
34534 TTTAAAT-TCATCAATTGATGGATTAACATTGCC
194 CTCAAATCT-ATCACTTGATGGATTAACTTTTCC
34567 AGGAAGAGTTCATAATGAGAAGAACTC
1 A-GAAGAGTTCATAATGAGAAGAACTC
34594 GTCATCTGAA
Statistics
Matches: 443, Mismatches: 31, Indels: 16
0.90 0.06 0.03
Matches are distributed among these distances:
226 203 0.46
227 8 0.02
228 214 0.48
229 18 0.04
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (226 bp):
AGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAATGGAAGAAGAAGTTCATAATGAGAAGAAT
TTGTTCAACCTTTTGCTCAAATCTATCACTTGATGGATTATCTTTTCCAGTTCAAGTTCATAATG
AGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCT
CAAATCTATCACTTGATGGATTAACTTTTCC
Found at i:34303 original size:341 final size:341
Alignment explanation
Indices: 33886--34607 Score: 1083
Period size: 341 Copynumber: 2.1 Consensus size: 341
33876 ATCTGAAGAA
* * *
33886 GAAGAGTTCATAATGAGTAGAATTCGTCATCTGAAGAATGATGAAGAAGTTCATAATGAGAAGAA
1 GAAGAGTTCATAATGAGAAGAA-TCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAA
** * ** *
33951 TTTGTTCAACCTTTTGCTCAAATTTATCACTTGATGGATTATCTTTTCCAGTTCTAGTTCATAAT
65 TTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGATTAGCTTTTCCAGAACAAGTTCATAAT
* *
34016 GAGAAGAACTCATCTGAAGAAGGATGAAGAAGTTCATAATGAGAAGAATTTGTTCAACATTTTGC
130 GAGAAGAACTCATCTAAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACATTTTGC
* * ****
34081 TCAAATCTATCACTTGATGGATTA-TCTTTTCCAGTTCGAGTTCATAATGAGAAGAACTCATCTG
195 TCAAATCCATCACTTGATGGATCAGT-TTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTG
*
34145 AAGAATGAGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTCAAA-TCTATCAC
259 AAGAAT--GAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTCAAATTC-ATCAA
* * *
34209 TTGATGGATTATCTTTTCCAG
321 TTGATGGATTAACATTGCCAG
***
34230 TTCGAGTTCATAATGAGAAGAA-C-TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAAT
1 GAAGAGTTCATAATGAGAAGAATCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAAT
*
34293 TTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGATTAGCTTTTCCAGAAGAAGTTCATAATG
66 TTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGATTAGCTTTTCCAGAACAAGTTCATAATG
* * *
34358 AGAAGAACTCATTTAAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAGCTTTTTGCT
131 AGAAGAACTCATCTAAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACATTTTGCT
*
34423 CAAATCCATCACTTGATGGGTCAGTTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAA
196 CAAATCCATCACTTGATGGATCAGTTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAA
* *
34488 GAATGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCAATTGAT
261 GAATGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTCAAATTCATCAATTGAT
34553 GGATTAACATTGCCAG
326 GGATTAACATTGCCAG
34569 GAAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAG
1 GAAGAGTTCATAATGAGAAGAA-TCGTCATCTGAAGAAG
34608 AATTTGTTCA
Statistics
Matches: 339, Mismatches: 34, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
339 87 0.26
340 2 0.01
341 217 0.64
342 15 0.04
344 18 0.05
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (341 bp):
GAAGAGTTCATAATGAGAAGAATCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAAT
TTGTTCAACCTTTTGCTCAAATCCATCACTTGATGGATTAGCTTTTCCAGAACAAGTTCATAATG
AGAAGAACTCATCTAAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACATTTTGCT
CAAATCCATCACTTGATGGATCAGTTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAA
GAATGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTCAAATTCATCAATTGAT
GGATTAACATTGCCAG
Found at i:34402 original size:20 final size:20
Alignment explanation
Indices: 34341--34404 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
34331 TAGCTTTTCC
34341 AGAAGAAGTTCATAATGAGA
1 AGAAGAAGTTCATAATGAGA
** *
34361 AGAACTCA-TT--TAAAGAAGGA
1 AGAA-GAAGTTCATAATG-A-GA
34381 AGAAGAAGTTCATAATGAGA
1 AGAAGAAGTTCATAATGAGA
34401 AGAA
1 AGAA
34405 TTTGTTCAGC
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
18 4 0.12
19 2 0.06
20 20 0.62
21 2 0.06
22 4 0.12
ACGTcount: A:0.52, C:0.06, G:0.23, T:0.19
Consensus pattern (20 bp):
AGAAGAAGTTCATAATGAGA
Found at i:34669 original size:92 final size:89
Alignment explanation
Indices: 34511--34697 Score: 252
Period size: 92 Copynumber: 2.1 Consensus size: 89
34501 GTTCATAATG
* * * * *
34511 AGAAGAATTTGTTCAACCTTTTGTTTAAATTCATCAATTGATGGATTAACATTGCCAGGAAGAGT
1 AGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCAATTGATGGATCAACATTGACAGGAAGAGT
34576 TCATAATGAGAAGAACTCGTCATCTGA
66 TCATAATGAGAAGAA--C-TCATCTGA
* *
34603 AGAAGAATTTGTTCAACCTTTTGCTCAAATCCATC-ATTCGATGGATCAACTTTTACAGAGAA-A
1 AGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCAATT-GATGGATCAACATTGACAG-GAAGA
34666 GTTCATAATGAGAAGAACTCATCTGA
64 GTTCATAATGAGAAGAACTCATCTGA
34692 AGAAGA
1 AGAAGA
34698 GGAAGTTCAT
Statistics
Matches: 86, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
89 14 0.16
90 1 0.01
91 3 0.03
92 65 0.76
93 3 0.03
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (89 bp):
AGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCAATTGATGGATCAACATTGACAGGAAGAGT
TCATAATGAGAAGAACTCATCTGA
Found at i:34981 original size:3 final size:3
Alignment explanation
Indices: 34973--35077 Score: 138
Period size: 3 Copynumber: 35.0 Consensus size: 3
34963 TTTGATTTAT
* * * * *
34973 TTA TTA TTA TTA TTA CTA TAA TGA TTA TTA TTA TTA TTA TTA CTA TAA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
35021 TTA TTA TTA TTA TTA TAA TTA TTA TTA TTA TAA ATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
35069 TTA TTA TTA
1 TTA TTA TTA
35078 AATATATATA
Statistics
Matches: 87, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 87 1.00
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:36071 original size:21 final size:19
Alignment explanation
Indices: 36042--36080 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
36032 ACTAAATCGA
36042 ATCTATAAACCTTTTAATTTG
1 ATCTATAAA--TTTTAATTTG
*
36063 ATCTCTAAATTTTAATTT
1 ATCTATAAATTTTAATTT
36081 TATTTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
21 8 0.47
ACGTcount: A:0.33, C:0.13, G:0.03, T:0.51
Consensus pattern (19 bp):
ATCTATAAATTTTAATTTG
Found at i:36473 original size:23 final size:22
Alignment explanation
Indices: 36447--36496 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
36437 ATATATAATA
* *
36447 AATAATAATTTATATTTTTTTTC
1 AATAATAATTT-TAATATTTTTC
*
36470 AATAAATTATTTTAATATTTTTC
1 AAT-AATAATTTTAATATTTTTC
36493 AATA
1 AATA
36497 TTAAAGAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
22 1 0.04
23 15 0.65
24 7 0.30
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (22 bp):
AATAATAATTTTAATATTTTTC
Found at i:37772 original size:36 final size:35
Alignment explanation
Indices: 37695--37774 Score: 106
Period size: 35 Copynumber: 2.3 Consensus size: 35
37685 ACAAAGCATC
* * * *
37695 AATTATATTCTAAACCTTAAATTCCAAAATGCTTT
1 AATTACATTCTAAACCTCAAATTCCAAAATACTTA
*
37730 AGTTACATTCTAAACCTCAAATTCCAAAAATACTTA
1 AATTACATTCTAAACCTCAAATTCC-AAAATACTTA
37766 AATTACATT
1 AATTACATT
37775 ACCAACTTCA
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
35 22 0.58
36 16 0.42
ACGTcount: A:0.42, C:0.19, G:0.03, T:0.36
Consensus pattern (35 bp):
AATTACATTCTAAACCTCAAATTCCAAAATACTTA
Found at i:37993 original size:30 final size:30
Alignment explanation
Indices: 37959--38019 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
37949 ATTTAAAAGT
37959 TAGATTTAACCAACTATAAGTTAACAATAC
1 TAGATTTAACCAACTATAAGTTAACAATAC
37989 TAGATTTAACCAACTATAAGTTAACAATAC
1 TAGATTTAACCAACTATAAGTTAACAATAC
38019 T
1 T
38020 CAATTTGATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.46, C:0.16, G:0.07, T:0.31
Consensus pattern (30 bp):
TAGATTTAACCAACTATAAGTTAACAATAC
Found at i:38474 original size:146 final size:147
Alignment explanation
Indices: 38293--38577 Score: 464
Period size: 146 Copynumber: 1.9 Consensus size: 147
38283 AAACTATTTA
* * *
38293 AATTAAAATCAAATAATATTATAGTATTATAAATATTTATAATTAAATTTAAACAGAAACTCAAA
1 AATTAAAATCAAATAATATTATAATATGATAAATATTTATAATTAAATTTAAAAAGAAACTCAAA
**
38358 AATTCAATTCAATTCGACTTGATTTAAATTTTATAAACTCAAA-TAAAAAAATTCGAGTTAACTA
66 AATTCAATTCAATTCGACTTGATTTAAATTTTATAAACTCAAATTAAAAAAATTCGAGCCAACTA
38422 TTTTATAAACATAACTG
131 TTTTATAAACATAACTG
* *
38439 AATTAGAATCAAATAATATTATAATATGATAAATATTTATAATTAAATTTAAAAAGAAACTCGAA
1 AATTAAAATCAAATAATATTATAATATGATAAATATTTATAATTAAATTTAAAAAGAAACTCAAA
* * * *
38504 AATTCAATTCAATTCGACTTTATTTAAATTTTATAAATTCAAATTGAAAAATTTCGAGCCAACTA
66 AATTCAATTCAATTCGACTTGATTTAAATTTTATAAACTCAAATTAAAAAAATTCGAGCCAACTA
38569 TTTTATAAA
131 TTTTATAAA
38578 TTAAATTGAG
Statistics
Matches: 127, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
146 101 0.80
147 26 0.20
ACGTcount: A:0.49, C:0.09, G:0.05, T:0.37
Consensus pattern (147 bp):
AATTAAAATCAAATAATATTATAATATGATAAATATTTATAATTAAATTTAAAAAGAAACTCAAA
AATTCAATTCAATTCGACTTGATTTAAATTTTATAAACTCAAATTAAAAAAATTCGAGCCAACTA
TTTTATAAACATAACTG
Found at i:41654 original size:20 final size:20
Alignment explanation
Indices: 41629--41666 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
41619 GTGGGAAGCG
41629 ACTGCCCTTTGAGGAAACTA
1 ACTGCCCTTTGAGGAAACTA
41649 ACTGCCCTTTGAGGAAAC
1 ACTGCCCTTTGAGGAAAC
41667 CTACAGCCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (20 bp):
ACTGCCCTTTGAGGAAACTA
Found at i:41675 original size:20 final size:20
Alignment explanation
Indices: 41632--41675 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
41622 GGAAGCGACT
*
41632 GCCCTTTGAGGAAACTAACT
1 GCCCTTTGAGGAAACTAACA
41652 GCCCTTTGAGGAAACCT-ACA
1 GCCCTTTGAGGAAA-CTAACA
41672 GCCC
1 GCCC
41676 ATGAGCACTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 20 0.91
21 2 0.09
ACGTcount: A:0.27, C:0.32, G:0.20, T:0.20
Consensus pattern (20 bp):
GCCCTTTGAGGAAACTAACA
Found at i:42665 original size:2 final size:2
Alignment explanation
Indices: 42658--42683 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
42648 AGTAAATAAG
42658 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
42684 CTTAGAGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:44683 original size:39 final size:39
Alignment explanation
Indices: 44628--44738 Score: 179
Period size: 39 Copynumber: 2.8 Consensus size: 39
44618 AGGTTGAATA
*
44628 AGTTCTTCAGACTATGAACTTC-TTCTTCTTCTTCAGATG
1 AGTTCTTCAGACTATGAAC-TCATTCTTCCTCTTCAGATG
* *
44667 AGTTCTTCAGATTATGAACTCATTCTTCCTCTTCATATG
1 AGTTCTTCAGACTATGAACTCATTCTTCCTCTTCAGATG
44706 AGTTCTTCAGACTATGAACTCATTCTTCCTCTT
1 AGTTCTTCAGACTATGAACTCATTCTTCCTCTT
44739 TAGACTATGA
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
38 2 0.03
39 65 0.97
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.43
Consensus pattern (39 bp):
AGTTCTTCAGACTATGAACTCATTCTTCCTCTTCAGATG
Found at i:44738 original size:26 final size:26
Alignment explanation
Indices: 44709--44769 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
44699 TCATATGAGT
*
44709 TCTTCAGACTATGAACTCATTCTTCC
1 TCTTCAGACTATGAACTCATTCTTCA
* *
44735 TCTTTAGACTATGAACTCCTTCTTCA
1 TCTTCAGACTATGAACTCATTCTTCA
44761 TCTTCAGAC
1 TCTTCAGAC
44770 GAGTTCTTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.23, C:0.30, G:0.08, T:0.39
Consensus pattern (26 bp):
TCTTCAGACTATGAACTCATTCTTCA
Found at i:44748 original size:65 final size:65
Alignment explanation
Indices: 44670--44808 Score: 206
Period size: 65 Copynumber: 2.1 Consensus size: 65
44660 TCAGATGAGT
* * * *
44670 TCTTCAGATTATGAACTCATTCTTCCTCTTCATATGAGTTCTTCAGACTATGAACTCATTCTTCC
1 TCTTCAGACTATGAACTCATTCTTCATCTTCAGACGAGTTCTTCAGACTATGAACTCATTCTTCC
* * * *
44735 TCTTTAGACTATGAACTCCTTCTTCATCTTCAGACGAGTTCTTCAGACTATGAACTCCTTCTTTC
1 TCTTCAGACTATGAACTCATTCTTCATCTTCAGACGAGTTCTTCAGACTATGAACTCATTCTTCC
44800 TCTTCAGAC
1 TCTTCAGAC
44809 GAGTTCTTAT
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.22, C:0.27, G:0.10, T:0.40
Consensus pattern (65 bp):
TCTTCAGACTATGAACTCATTCTTCATCTTCAGACGAGTTCTTCAGACTATGAACTCATTCTTCC
Found at i:44783 original size:39 final size:39
Alignment explanation
Indices: 44735--44816 Score: 139
Period size: 39 Copynumber: 2.1 Consensus size: 39
44725 TCATTCTTCC
*
44735 TCTTTAGACTATGAACTCCTTC-TTCATCTTCAGACGAGT
1 TCTTCAGACTATGAACTCCTTCTTTC-TCTTCAGACGAGT
44774 TCTTCAGACTATGAACTCCTTCTTTCTCTTCAGACGAGT
1 TCTTCAGACTATGAACTCCTTCTTTCTCTTCAGACGAGT
44813 TCTT
1 TCTT
44817 ATGAACTCCT
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
39 38 0.93
40 3 0.07
ACGTcount: A:0.21, C:0.27, G:0.12, T:0.40
Consensus pattern (39 bp):
TCTTCAGACTATGAACTCCTTCTTTCTCTTCAGACGAGT
Found at i:44825 original size:33 final size:36
Alignment explanation
Indices: 44744--44829 Score: 108
Period size: 39 Copynumber: 2.4 Consensus size: 36
44734 CTCTTTAGAC
44744 TATGAACTCCTTC-TTCATCTTCAGACGAGTTCTTCAGA
1 TATGAACTCCTTCTTTCATCTTCAGACGAGTTCTT---A
44782 CTATGAACTCCTTCTTTC-TCTTCAGACGAGTTC-T-
1 -TATGAACTCCTTCTTTCATCTTCAGACGAGTTCTTA
44816 TATGAACTCCTTCT
1 TATGAACTCCTTCT
44830 CGCTCTTTGT
Statistics
Matches: 46, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
33 14 0.30
38 1 0.02
39 28 0.61
40 3 0.07
ACGTcount: A:0.21, C:0.28, G:0.12, T:0.40
Consensus pattern (36 bp):
TATGAACTCCTTCTTTCATCTTCAGACGAGTTCTTA
Found at i:48184 original size:23 final size:23
Alignment explanation
Indices: 48135--48185 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
48125 TGTTTCACAC
48135 AAAA-ATTAATATAAAAAATAAT
1 AAAATATTAATATAAAAAATAAT
* *
48157 TAAATATTAATATACAAGAAT-AT
1 AAAATATTAATATA-AAAAATAAT
48180 AAAATA
1 AAAATA
48186 AATTGAAAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
22 3 0.12
23 16 0.67
24 5 0.21
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (23 bp):
AAAATATTAATATAAAAAATAAT
Found at i:50273 original size:24 final size:24
Alignment explanation
Indices: 50237--50307 Score: 133
Period size: 24 Copynumber: 3.0 Consensus size: 24
50227 TTGTTGGAGT
*
50237 TGTTGGCAACTGCTGGAATGGGGC
1 TGTTGGCAGCTGCTGGAATGGGGC
50261 TGTTGGCAGCTGCTGGAATGGGGC
1 TGTTGGCAGCTGCTGGAATGGGGC
50285 TGTTGGCAGCTGCTGGAATGGGG
1 TGTTGGCAGCTGCTGGAATGGGG
50308 AGCTACAGAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.14, C:0.15, G:0.45, T:0.25
Consensus pattern (24 bp):
TGTTGGCAGCTGCTGGAATGGGGC
Found at i:50754 original size:17 final size:17
Alignment explanation
Indices: 50734--50813 Score: 56
Period size: 18 Copynumber: 4.5 Consensus size: 17
50724 AATGTATCTT
50734 AATATTAATATATATTA
1 AATATTAATATATATTA
* *
50751 AATAAATAA-ATTAGATTA
1 AAT-ATTAATA-TATATTA
*
50769 TATTATTAAT-TATATTA
1 -AATATTAATATATATTA
*
50786 AATTATTAAATACATATTAA
1 AA-TATT-AATATATATT-A
50806 AATATTAA
1 AATATTAA
50814 AATAAATATT
Statistics
Matches: 48, Mismatches: 7, Indels: 15
0.69 0.10 0.21
Matches are distributed among these distances:
16 1 0.02
17 14 0.29
18 19 0.40
19 11 0.23
20 3 0.06
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (17 bp):
AATATTAATATATATTA
Found at i:50808 original size:20 final size:20
Alignment explanation
Indices: 50780--50825 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
50770 ATTATTAATT
* *
50780 ATATTAAATTATT-AAATAC
1 ATATTAAAATATTAAAATAA
50799 ATATTAAAATATTAAAATAA
1 ATATTAAAATATTAAAATAA
50819 ATATTAA
1 ATATTAA
50826 TTTTCATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (20 bp):
ATATTAAAATATTAAAATAA
Found at i:50812 original size:36 final size:36
Alignment explanation
Indices: 50734--50813 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 36
50724 AATGTATCTT
* *
50734 AATATTAATATATATTAAATAAATAAATTAGATTAT
1 AATATTAATATATATTAAATAAATAAATCAGATTAA
* * * *
50770 ATTATTAAT-TATATTAAATTATTAAATACATATTAA
1 AATATTAATATATATTAAATAAATAAAT-CAGATTAA
50806 AATATTAA
1 AATATTAA
50814 AATAAATATT
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
35 16 0.44
36 20 0.56
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (36 bp):
AATATTAATATATATTAAATAAATAAATCAGATTAA
Found at i:51364 original size:3 final size:3
Alignment explanation
Indices: 51356--51425 Score: 95
Period size: 3 Copynumber: 21.7 Consensus size: 3
51346 TGGTCACTGT
51356 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
51405 TATA TATA TATA TATA TTA TT
1 T-TA T-TA T-TA T-TA TTA TT
51426 TTGTATGTGT
Statistics
Matches: 66, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 47 0.71
4 19 0.29
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:53272 original size:15 final size:16
Alignment explanation
Indices: 53247--53278 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
53237 GAAAAAAATT
53247 AAGACAAAAGAAAAAG
1 AAGACAAAAGAAAAAG
53263 AAGA-AAAAGAAAAAG
1 AAGACAAAAGAAAAAG
53278 A
1 A
53279 GTCAAATGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.78, C:0.03, G:0.19, T:0.00
Consensus pattern (16 bp):
AAGACAAAAGAAAAAG
Found at i:59423 original size:2 final size:2
Alignment explanation
Indices: 59407--59442 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
59397 CCTTTATAGA
59407 AT AT AT -T AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
59443 TTTTTTAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 30 0.94
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:61219 original size:11 final size:11
Alignment explanation
Indices: 61203--61227 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
61193 TTAAAGAAAA
61203 AAATAATGAAG
1 AAATAATGAAG
61214 AAATAATGAAG
1 AAATAATGAAG
61225 AAA
1 AAA
61228 ATAAATTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (11 bp):
AAATAATGAAG
Found at i:61401 original size:13 final size:14
Alignment explanation
Indices: 61383--61411 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
61373 GAAAAAAGTC
61383 AAAAAAA-TTGAAA
1 AAAAAAAGTTGAAA
61396 AAAAAAAGTTGAAA
1 AAAAAAAGTTGAAA
61410 AA
1 AA
61412 GTAAAAGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.14
Consensus pattern (14 bp):
AAAAAAAGTTGAAA
Found at i:62686 original size:31 final size:31
Alignment explanation
Indices: 62651--62717 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
62641 TTAAAACTTA
62651 CAATACAGTCCCCCAACATTTAGTCCGTTTG
1 CAATACAGTCCCCCAACATTTAGTCCGTTTG
** *
62682 CAATATGGTCCCTCAACATTTAGTCCGTTTG
1 CAATACAGTCCCCCAACATTTAGTCCGTTTG
62713 CAATA
1 CAATA
62718 TGGTCCCCGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.27, C:0.28, G:0.13, T:0.31
Consensus pattern (31 bp):
CAATACAGTCCCCCAACATTTAGTCCGTTTG
Found at i:62718 original size:31 final size:31
Alignment explanation
Indices: 62658--62725 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
62648 TTACAATACA
62658 GTCCCCCAACATTTAGTCCGTTTGCAATATG
1 GTCCCCCAACATTTAGTCCGTTTGCAATATG
*
62689 GTCCCTCAACATTTAGTCCGTTTGCAATATG
1 GTCCCCCAACATTTAGTCCGTTTGCAATATG
62720 GTCCCC
1 GTCCCC
62726 GATGTAACTG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.21, C:0.31, G:0.16, T:0.32
Consensus pattern (31 bp):
GTCCCCCAACATTTAGTCCGTTTGCAATATG
Found at i:64726 original size:31 final size:31
Alignment explanation
Indices: 64657--64732 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 31
64647 TTTAAAACTT
** * *
64657 GCAATATAATCCCCCAACATTTATTCCATTT
1 GCAATATGGTCCCCCAACATTTAGTCCATTC
* *
64688 GCAATATGGTCCCTCAACATTTAGTCCGTTC
1 GCAATATGGTCCCCCAACATTTAGTCCATTC
64719 GCAATATGGTCCCC
1 GCAATATGGTCCCC
64733 GACGTAACTG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (31 bp):
GCAATATGGTCCCCCAACATTTAGTCCATTC
Found at i:71191 original size:101 final size:101
Alignment explanation
Indices: 71016--71223 Score: 371
Period size: 101 Copynumber: 2.1 Consensus size: 101
71006 ATCCGACCAA
*
71016 ATCTTTCTCGATATGGTATGAATAATATCAATATTACAATCTAAGAAACTCAAAAATTAAGTTTA
1 ATCTTTCCCGATATGGTATGAATAATATCAATATTACAATCTAAGAAACTCAAAAATTAAGTTTA
* *
71081 AACTTATTTAAACTCTCTTTAAAAGATTTTTTTATT
66 AACTTATTTAAACTCTATTCAAAAGATTTTTTTATT
*
71117 ATCTTTCCCGATATGGTATGAATAATATCAATATTATAATCTAAGAAACTCAAAAATTAAGTTTA
1 ATCTTTCCCGATATGGTATGAATAATATCAATATTACAATCTAAGAAACTCAAAAATTAAGTTTA
*
71182 AACTTATTTAAATTCTATTCAAAAGATTTTTTTATT
66 AACTTATTTAAACTCTATTCAAAAGATTTTTTTATT
71218 ATCTTT
1 ATCTTT
71224 TAAGTTTTAA
Statistics
Matches: 102, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
101 102 1.00
ACGTcount: A:0.39, C:0.12, G:0.07, T:0.42
Consensus pattern (101 bp):
ATCTTTCCCGATATGGTATGAATAATATCAATATTACAATCTAAGAAACTCAAAAATTAAGTTTA
AACTTATTTAAACTCTATTCAAAAGATTTTTTTATT
Found at i:77415 original size:20 final size:20
Alignment explanation
Indices: 77390--77583 Score: 76
Period size: 20 Copynumber: 9.7 Consensus size: 20
77380 GATTTTCCAT
* *
77390 AATCGCAACGCGAATATGA-A
1 AATCGCAACGCGAACA-CATA
77410 AATCGCAACGCGAACACATA
1 AATCGCAACGCGAACACATA
* *
77430 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
77450 AATCGCAACGTGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* ****
77470 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGAACACATA
* * *
77490 AATCGCAATGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
77510 TATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
** *
77530 AATCGCAACGATAATACATAA
1 AATCGCAACGCGAACACAT-A
* *
77551 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
77571 AATCGCAACGCGA
1 AATCGCAACGCGA
77584 TATTTAAAGC
Statistics
Matches: 139, Mismatches: 28, Indels: 15
0.76 0.15 0.08
Matches are distributed among these distances:
19 3 0.02
20 120 0.86
21 15 0.11
22 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGAACACATA
Found at i:77435 original size:40 final size:39
Alignment explanation
Indices: 77386--77583 Score: 200
Period size: 40 Copynumber: 5.0 Consensus size: 39
77376 TTGCGATTTT
* ** *
77386 CCAT-AATCGCAACGCGAATATGAAAATCGCAACGCGAA
1 CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCGAA
* *
77424 CACATAAATCGCAACGCGTATCCGTAAATCGCAACGTGTAT
1 C-CATAAATCGCAACGCGTATCCGTAAATCGCAACGCG-AA
* ** * *
77465 CCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTAT
1 CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCG-AA
* * **
77505 CCGTATATCGCAACGCGTATCCGTAAATCGCAACGATAA
1 CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCGAA
*
77544 TACATAAAATCGCAACGCGTATCCGTAAATCGCAACGCGA
1 -CCAT-AAATCGCAACGCGTATCCGTAAATCGCAACGCGA
77584 TATTTAAAGC
Statistics
Matches: 132, Mismatches: 23, Indels: 7
0.81 0.14 0.04
Matches are distributed among these distances:
38 1 0.01
39 4 0.03
40 94 0.71
41 33 0.25
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.19
Consensus pattern (39 bp):
CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCGAA
Found at i:77473 original size:60 final size:60
Alignment explanation
Indices: 77390--77582 Score: 251
Period size: 60 Copynumber: 3.2 Consensus size: 60
77380 GATTTTCCAT
* ** * *
77390 AATCGCAACGCGAATATGAAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
* * *** *
77450 AATCGCAACGTGTATCCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
* **
77510 TATCGCAACGCGTATCCGTAAATCGCAACGATAATACATAAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACAT-AAATCGCAACGCGTATCCGTA
77571 AATCGCAACGCG
1 AATCGCAACGCG
77583 ATATTTAAAG
Statistics
Matches: 111, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
60 80 0.72
61 31 0.28
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.19
Consensus pattern (60 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
Found at i:78003 original size:33 final size:33
Alignment explanation
Indices: 77964--78034 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
77954 TTCACTTAGA
*
77964 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
77997 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
78030 TTTCA
1 TTTCA
78035 AGTTAGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:78156 original size:20 final size:20
Alignment explanation
Indices: 78114--78202 Score: 93
Period size: 20 Copynumber: 4.8 Consensus size: 20
78104 TGCAGAAGAG
*
78114 TCGCAACGAGATAAATGAAAA
1 TCGCAACGAGA-GAATGAAAA
*
78135 TCGCAACGAGAGAATGACAA
1 TCGCAACGAGAGAATGAAAA
78155 TCGCAAC--GAG-A-G--AA
1 TCGCAACGAGAGAATGAAAA
*
78169 TCGCAACGCGA-AATGAAAA
1 TCGCAACGAGAGAATGAAAA
78188 TCGCAACGAGAGAAT
1 TCGCAACGAGAGAAT
78203 CGCAACGCGA
Statistics
Matches: 58, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
14 9 0.16
16 4 0.07
17 2 0.03
18 3 0.05
19 12 0.21
20 17 0.29
21 11 0.19
ACGTcount: A:0.46, C:0.19, G:0.24, T:0.11
Consensus pattern (20 bp):
TCGCAACGAGAGAATGAAAA
Found at i:78172 original size:14 final size:14
Alignment explanation
Indices: 78153--78209 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
78143 AGAGAATGAC
78153 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
78167 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
78186 AATCGCAACGAGAG
1 AATCGCAACGAGAG
78200 AATCGCAACG
1 AATCGCAACG
78210 CGAAACCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.44, C:0.23, G:0.25, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:78190 original size:33 final size:33
Alignment explanation
Indices: 78133--78225 Score: 141
Period size: 33 Copynumber: 2.8 Consensus size: 33
78123 GATAAATGAA
* *
78133 AATCGCAACGAGAGAATGACAATCGCAACGAGAG
1 AATCGCAACGCGA-AATGAAAATCGCAACGAGAG
78167 AATCGCAACGCGAAATGAAAATCGCAACGAGAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAGAG
**
78200 AATCGCAACGCGAAACCAAAATCGCA
1 AATCGCAACGCGAAATGAAAATCGCA
78226 TTGCGATTTT
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
33 43 0.78
34 12 0.22
ACGTcount: A:0.45, C:0.24, G:0.23, T:0.09
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAGAG
Found at i:78262 original size:14 final size:14
Alignment explanation
Indices: 78243--78332 Score: 72
Period size: 14 Copynumber: 5.7 Consensus size: 14
78233 TTTCATTTCG
78243 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
78257 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
78276 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
78290 CGTTGCGATTGTCATCT
1 CGTTGCGA-T-TC-TCT
*
78307 CGCGTTGTGATTCTCT
1 --CGTTGCGATTCTCT
78323 CGTTGCGATT
1 CGTTGCGATT
78333 TTCATTTCAA
Statistics
Matches: 62, Mismatches: 4, Indels: 20
0.72 0.05 0.23
Matches are distributed among these distances:
14 27 0.44
15 1 0.02
16 8 0.13
17 8 0.13
18 1 0.02
19 17 0.27
ACGTcount: A:0.09, C:0.24, G:0.23, T:0.43
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:78268 original size:33 final size:33
Alignment explanation
Indices: 78226--78340 Score: 203
Period size: 33 Copynumber: 3.5 Consensus size: 33
78216 CAAAATCGCA
78226 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
78259 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
* * *
78292 TTGCGATTGTCATCTCGCGTTGTGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
78325 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
78341 AACCAAAAGA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 77 1.00
ACGTcount: A:0.10, C:0.23, G:0.21, T:0.46
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:78312 original size:19 final size:18
Alignment explanation
Indices: 78221--78333 Score: 79
Period size: 19 Copynumber: 6.8 Consensus size: 18
78211 GAAACCAAAA
* *
78221 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGA-TTTCATC
78240 TCGCGTTGCGA-TTC-TC
1 TCGCGTTGCGATTTCATC
*
78256 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGA-TTTCATC
78273 TCGCGTTGCGA-TTC-TC
1 TCGCGTTGCGATTTCATC
78289 T--CGTTGCGATTGTCATC
1 TCGCGTTGCGATT-TCATC
*
78306 TCGCGTTGTGA-TTC-TC
1 TCGCGTTGCGATTTCATC
78322 T--CGTTGCGATTT
1 TCGCGTTGCGATTT
78334 TCATTTCAAC
Statistics
Matches: 77, Mismatches: 6, Indels: 26
0.71 0.06 0.24
Matches are distributed among these distances:
14 23 0.30
15 3 0.04
16 12 0.16
17 13 0.17
18 1 0.01
19 25 0.32
ACGTcount: A:0.10, C:0.24, G:0.22, T:0.44
Consensus pattern (18 bp):
TCGCGTTGCGATTTCATC
Found at i:80194 original size:91 final size:93
Alignment explanation
Indices: 80039--80507 Score: 894
Period size: 91 Copynumber: 5.1 Consensus size: 93
80029 TAGATTGCTT
*
80039 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
80104 -TT-TCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
80130 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
80195 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
80223 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
80288 TTTGTCTTTG-TTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
80315 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTC-TTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
80379 TTTGTCTTTGTTTTGTC-TTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
80406 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
80471 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
80499 AGTAAATTT
1 AGTAAATTT
80508 ATCCATTCAA
Statistics
Matches: 372, Mismatches: 1, Indels: 8
0.98 0.00 0.02
Matches are distributed among these distances:
91 148 0.40
92 106 0.28
93 118 0.32
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:80366 original size:184 final size:185
Alignment explanation
Indices: 80039--80507 Score: 892
Period size: 184 Copynumber: 2.6 Consensus size: 185
80029 TAGATTGCTT
*
80039 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
80104 -TT-TCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
80167 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
131 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTC-TTTGGTTGAA
80223 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
80288 TTTGTCTTTG-TTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
80352 GTGTATTC-TTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTGGTTGAA
131 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTGGTTGAA
80406 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
80471 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTT
80508 ATCCATTCAA
Statistics
Matches: 281, Mismatches: 1, Indels: 6
0.98 0.00 0.02
Matches are distributed among these distances:
183 85 0.30
184 126 0.45
185 64 0.23
186 6 0.02
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (185 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTGGTTGAA
Found at i:80591 original size:19 final size:19
Alignment explanation
Indices: 80551--80679 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
80541 TAGTTTACTT
* *
80551 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
80571 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
80590 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
80609 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
80623 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
*
80642 TCGCAA--CG--A-CAAGA
1 TCGCAACGCGAAACCAAAA
80656 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
80675 TCGCA
1 TCGCA
80680 TTGCGATTTT
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 19 0.21
15 2 0.02
16 4 0.04
17 4 0.04
18 2 0.02
19 46 0.51
20 13 0.14
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:80630 original size:33 final size:32
Alignment explanation
Indices: 80587--80679 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 32
80577 CGCGAAACCA
**
80587 AAATCGCAACGCGAAATGAAAATCGCAACGAC
1 AAATCGCAACGCGAAACCAAAATCGCAACGAC
80619 AGAATCGCAACGCGAAACCAAAATCGCAACGAC
1 A-AATCGCAACGCGAAACCAAAATCGCAACGAC
80652 AAGATCGCAACGCGAAACCAAAATCGCA
1 AA-ATCGCAACGCGAAACCAAAATCGCA
80680 TTGCGATTTT
Statistics
Matches: 57, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
32 2 0.04
33 55 0.96
ACGTcount: A:0.46, C:0.28, G:0.18, T:0.08
Consensus pattern (32 bp):
AAATCGCAACGCGAAACCAAAATCGCAACGAC
Found at i:80677 original size:52 final size:52
Alignment explanation
Indices: 80551--80679 Score: 140
Period size: 52 Copynumber: 2.5 Consensus size: 52
80541 TAGTTTACTT
**
80551 TCGCAACACGAAACTTAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
1 TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
* * *
80603 T-G-AAAATCGCAACGACAGAATCGCAACGCGAAACCAAAATCGCAACGAC-AAGA
1 TCGCAACA-CGAAAC-ACAAAATCGCAACGCGAAACCAAAATCGCAACG-CGAA-A
*
80656 TCGCAACGCGAAAC-CAAAATCGCA
1 TCGCAACACGAAACACAAAATCGCA
80680 TTGCGATTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
50 3 0.05
51 6 0.10
52 42 0.68
53 3 0.05
54 6 0.10
55 2 0.03
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (52 bp):
TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
Found at i:80697 original size:19 final size:19
Alignment explanation
Indices: 80675--80809 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
80665 GAAACCAAAA
*
80675 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
80694 TCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTCATT
80710 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
80727 TCGCATTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
80743 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
80760 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
*
80779 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
80799 TCGTGTTGCGA
1 TCGCGTTGCGA
80810 AAGTAAACTA
Statistics
Matches: 95, Mismatches: 10, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 15 0.16
16 11 0.12
17 11 0.12
19 46 0.48
20 12 0.13
ACGTcount: A:0.11, C:0.19, G:0.24, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:80716 original size:14 final size:14
Alignment explanation
Indices: 80697--80753 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
80687 TTTCATTTCG
80697 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
80711 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TTT
*
80728 CGCATTGCGATTCTGT
1 CG--TTGCGATTCTTT
80744 CGTTGCGATT
1 CGTTGCGATT
80754 TTCATTTCGC
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 16 0.43
16 7 0.19
17 8 0.22
19 6 0.16
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:80722 original size:33 final size:33
Alignment explanation
Indices: 80680--80772 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
80670 CAAAATCGCA
*
80680 TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
*
80713 TTGCGATTTTCATTTCGCATTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
80746 TTGCGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
80773 TTGGTTTCGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.11, C:0.20, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
Found at i:82748 original size:14 final size:14
Alignment explanation
Indices: 82729--82764 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
82719 ATTGTTTAAT
82729 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
82743 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
82757 TGATTTGT
1 TGATTTGT
82765 GTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:82938 original size:20 final size:19
Alignment explanation
Indices: 82870--82952 Score: 113
Period size: 19 Copynumber: 4.6 Consensus size: 19
82860 AAAAATGACT
82870 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
82889 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
82903 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
82922 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
82942 ATCGCAATGCG
1 ATCGCAATGCG
82953 TTTATAATTT
Statistics
Matches: 56, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
14 10 0.18
15 1 0.02
16 2 0.04
17 2 0.04
18 1 0.02
19 21 0.38
20 19 0.34
ACGTcount: A:0.43, C:0.18, G:0.24, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:83001 original size:33 final size:33
Alignment explanation
Indices: 82959--83177 Score: 205
Period size: 33 Copynumber: 6.5 Consensus size: 33
82949 TGCGTTTATA
82959 ATTTCGCATTGCGATTATCTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTATCTCGTTGCGATTTTC
* *
82992 ATTTCGCATTGCGATTCTGTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTATCTCGTTGCGATTTTC
*
83025 ATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTC
1 ATTTCGCATTGCGA--TT-ATCTCG--TTGCGATT-T-TC
* * * * *
83065 GTTGCG-ATTTTC-ATT-TCGCATTGCGATTTTC
1 ATTTCGCA-TTGCGATTATCTCGTTGCGATTTTC
*
83096 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTATCTCGTTGCGATTTTC
* *
83129 ATTTCCGCATTGCGATTTTCAT-GTTGGGA-TTTC
1 ATTT-CGCATTGCGATTATC-TCGTTGCGATTTTC
*
83162 ATTTCGCGTTGCGATT
1 ATTTCGCATTGCGATT
83178 GTATTTTCCG
Statistics
Matches: 155, Mismatches: 18, Indels: 27
0.77 0.09 0.14
Matches are distributed among these distances:
31 9 0.06
32 16 0.10
33 79 0.51
34 20 0.13
35 5 0.03
36 4 0.03
37 2 0.01
38 8 0.05
39 3 0.02
40 9 0.06
ACGTcount: A:0.14, C:0.21, G:0.19, T:0.46
Consensus pattern (33 bp):
ATTTCGCATTGCGATTATCTCGTTGCGATTTTC
Found at i:83005 original size:19 final size:19
Alignment explanation
Indices: 82981--83150 Score: 199
Period size: 19 Copynumber: 9.7 Consensus size: 19
82971 GATTATCTCG
82981 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
83000 TTGCGA--TTC-TGTCG--
1 TTGCGATTTTCATTTCGCA
83014 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
83033 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
83052 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
83066 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
83085 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
83104 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
83118 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
83138 TTGCGATTTTCAT
1 TTGCGATTTTCAT
83151 GTTGGGATTT
Statistics
Matches: 129, Mismatches: 6, Indels: 31
0.78 0.04 0.19
Matches are distributed among these distances:
14 18 0.14
16 21 0.16
17 19 0.15
18 2 0.02
19 56 0.43
20 13 0.10
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:83057 original size:85 final size:85
Alignment explanation
Indices: 82959--83177 Score: 277
Period size: 85 Copynumber: 2.6 Consensus size: 85
82949 TGCGTTTATA
*
82959 ATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTTCGCATTGCGATTCTGTCGTTGCG-ATTT
1 ATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTTCGCATTGCGATT-T-TCATTGCGCA-TT
*
83023 TC-ATT-TCGCATTGCGATTTTC
63 GCGATTCTCGCATTGCGATTTTC
* *
83044 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCG
1 ATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTGCGCATTGCG
* *
83109 ATTCTCTCGTTGCGATTTTC
66 ATTCTCGCATTGCGATTTTC
* * *
83129 ATTTCCGCATTGCGATTTTCAT-GTTGGGA-TTTCATTTCGCGTTGCGATT
1 ATTT-CGCATTGCGATTATC-TCGTTGCGATTTTCATTTCGCATTGCGATT
83178 GTATTTTCCG
Statistics
Matches: 120, Mismatches: 9, Indels: 10
0.86 0.06 0.07
Matches are distributed among these distances:
83 9 0.08
84 5 0.04
85 85 0.71
86 20 0.17
87 1 0.01
ACGTcount: A:0.14, C:0.21, G:0.19, T:0.46
Consensus pattern (85 bp):
ATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTGCGCATTGCG
ATTCTCGCATTGCGATTTTC
Found at i:83177 original size:52 final size:52
Alignment explanation
Indices: 82981--83150 Score: 322
Period size: 52 Copynumber: 3.2 Consensus size: 52
82971 GATTATCTCG
*
82981 TTGCGATTTTCATTTCGCATTGCGATTCTGTCGTTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
83033 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
83085 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCA
83138 TTGCGATTTTCAT
1 TTGCGATTTTCAT
83151 GTTGGGATTT
Statistics
Matches: 116, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
52 99 0.85
53 17 0.15
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.46
Consensus pattern (52 bp):
TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
Found at i:83196 original size:52 final size:53
Alignment explanation
Indices: 82981--83183 Score: 274
Period size: 52 Copynumber: 3.9 Consensus size: 53
82971 GATTATCTCG
*
82981 TTGCGATTTTCATTTCGCATTGCGATTCT-GTCGTTGCGATTTTCATTT-CGCA
1 TTGCGATTTTCATTTCGCATTGCGATTCTCG-CGTTGCGATTGTCATTTCCGCA
* *
83033 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCA
1 TTGCGATTTTCATTTCGCATTGCGATTCTCGCGTTGCGATTGTCATTTCCGCA
* *
83085 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTTCGCATTGCGATTCTCGCGTTGCGATTGTCATTTCCGCA
* * *
83138 TTGCGATTTTCATGTTGGGATTTC-ATT-TCGCGTTGCGATTGT-ATTT
1 TTGCGATTTTCAT-TTCGCATTGCGATTCTCGCGTTGCGATTGTCATTT
83184 TCCGTGTTGC
Statistics
Matches: 142, Mismatches: 6, Indels: 7
0.92 0.04 0.05
Matches are distributed among these distances:
51 4 0.03
52 111 0.78
53 20 0.14
54 7 0.05
ACGTcount: A:0.13, C:0.21, G:0.19, T:0.47
Consensus pattern (53 bp):
TTGCGATTTTCATTTCGCATTGCGATTCTCGCGTTGCGATTGTCATTTCCGCA
Found at i:85680 original size:24 final size:24
Alignment explanation
Indices: 85646--85692 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
85636 CTGAAACATC
85646 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
85670 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
85693 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:86397 original size:20 final size:20
Alignment explanation
Indices: 86369--86758 Score: 448
Period size: 20 Copynumber: 19.4 Consensus size: 20
86359 AAATTTCAGT
* * * *
86369 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
86389 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
* * *
86409 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
86429 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
86449 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
86469 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
86489 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
86509 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
86529 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
86549 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGC
*
86569 GTTGCGGTTTACGGATACGC
1 GTTGCGATTTACGGATACGC
* * *
86589 GTTGCGATTTTATGTATTA-TC
1 GTTGCGA-TTTACGGA-TACGC
86610 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
86630 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATACGC
* **
86650 ATTGCGATTTACCCATACGC
1 GTTGCGATTTACGGATACGC
*
86670 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGC
86690 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
* *
86710 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATACGC
* ** *
86730 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATACGC
86750 GTTGCGATT
1 GTTGCGATT
86759 ATGGAAAATC
Statistics
Matches: 321, Mismatches: 38, Indels: 22
0.84 0.10 0.06
Matches are distributed among these distances:
19 7 0.02
20 293 0.91
21 19 0.06
22 2 0.01
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.36
Consensus pattern (20 bp):
GTTGCGATTTACGGATACGC
Found at i:88956 original size:64 final size:65
Alignment explanation
Indices: 88888--89044 Score: 173
Period size: 64 Copynumber: 2.5 Consensus size: 65
88878 TTGAAGGTGT
***
88888 ATCGATGCA-CAGGTAGTGCATCGATGCA-CTCTTTTAA-AATAAAAACATCGAATGCA-ATTAG
1 ATCGATGCATCAGGTAGTGCATCGATGCATC-CCAGTAATAAT-AAAACATCGAATGCATATTA-
88949 TGC
63 TGC
* * * *
88952 ATCGATGCATAAGGCA-TGCATCGATGCATCCCAGTAATAATACAACATCGAATGCATTTTATGC
1 ATCGATGCATCAGGTAGTGCATCGATGCATCCCAGTAATAATAAAACATCGAATGCATATTATGC
*
89016 ACCGATGCATCA-GTAGTGCATCGATGCAT
1 ATCGATGCATCAGGTAGTGCATCGATGCAT
89045 ACCTTCATTA
Statistics
Matches: 78, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
63 2 0.03
64 65 0.83
65 11 0.14
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (65 bp):
ATCGATGCATCAGGTAGTGCATCGATGCATCCCAGTAATAATAAAACATCGAATGCATATTATGC
Found at i:90697 original size:149 final size:148
Alignment explanation
Indices: 90384--90686 Score: 498
Period size: 149 Copynumber: 2.0 Consensus size: 148
90374 GAGTCGAGGG
* * * * * *
90384 TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATTTATGAGGTCTTTGAGGCACATA
1 TCTACGCGGTCCTTCGGGACATATATATATTCTGTGGAACATGTATGAAGTCTTTAAGACACATA
* *
90449 CTTGGTCCTTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTAT
66 CTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTAT
*
90514 ATGGCACTACGGTGCAAT
131 AGGGCACTACGGTGCAAT
* *
90532 TCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATGTGTGAAGTCTTGTAAGACACAT
1 TCTACGCGGTCCTTCGGGACATATATATATTCTGTGGAACATGTATGAAGTCTT-TAAGACACAT
90597 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTA
65 ACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTA
90662 TAGGGCACTACGGTGCAAT
130 TAGGGCACTACGGTGCAAT
90681 TCTACG
1 TCTACG
90687 TGGCACTTCG
Statistics
Matches: 143, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
148 48 0.34
149 95 0.66
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (148 bp):
TCTACGCGGTCCTTCGGGACATATATATATTCTGTGGAACATGTATGAAGTCTTTAAGACACATA
CTTGATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACATTATTAT
AGGGCACTACGGTGCAAT
Found at i:90698 original size:23 final size:23
Alignment explanation
Indices: 90658--90709 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
90648 TATGGACATT
90658 ATTATA-G-GGCACTACGGTGCA
1 ATTATACGTGGCACTACGGTGCA
* *
90679 ATTCTACGTGGCACTTCGGTGCA
1 ATTATACGTGGCACTACGGTGCA
90702 ATTATACG
1 ATTATACG
90710 AGCTGTGGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 5 0.19
22 1 0.04
23 20 0.77
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (23 bp):
ATTATACGTGGCACTACGGTGCA
Found at i:90923 original size:21 final size:21
Alignment explanation
Indices: 90899--90959 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
90889 ATAAATAATT
*
90899 TGATGATAATGATAGA-GATAA
1 TGATAATAAT-ATAGATGATAA
*
90920 TGATAATAATATATATGATAA
1 TGATAATAATATAGATGATAA
* * *
90941 TGCTAAGAAAATAGATGAT
1 TGATAATAATATAGATGAT
90960 GATATGTCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
20 4 0.12
21 29 0.88
ACGTcount: A:0.49, C:0.02, G:0.18, T:0.31
Consensus pattern (21 bp):
TGATAATAATATAGATGATAA
Found at i:98320 original size:15 final size:15
Alignment explanation
Indices: 98302--98331 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
98292 AAAAGTAAAT
98302 CATAAAAAAACTTAA
1 CATAAAAAAACTTAA
*
98317 CATAAAAAGACTTAA
1 CATAAAAAAACTTAA
98332 TACTTACTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.13, G:0.03, T:0.20
Consensus pattern (15 bp):
CATAAAAAAACTTAA
Found at i:99459 original size:12 final size:12
Alignment explanation
Indices: 99439--99489 Score: 66
Period size: 12 Copynumber: 4.2 Consensus size: 12
99429 TCTAAAACCC
* *
99439 TAGAGATAAACA
1 TAGAAATAAAAA
99451 TAGAAATAAAAA
1 TAGAAATAAAAA
*
99463 TAAAAATAAAAA
1 TAGAAATAAAAA
*
99475 TAAAAATAAAAA
1 TAGAAATAAAAA
99487 TAG
1 TAG
99490 TCCTAAAGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 35 1.00
ACGTcount: A:0.73, C:0.02, G:0.08, T:0.18
Consensus pattern (12 bp):
TAGAAATAAAAA
Found at i:99465 original size:6 final size:6
Alignment explanation
Indices: 99444--99488 Score: 72
Period size: 6 Copynumber: 7.5 Consensus size: 6
99434 AACCCTAGAG
* *
99444 ATAAAC ATAGAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATA
99489 GTCCTAAAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.18
Consensus pattern (6 bp):
ATAAAA
Found at i:99842 original size:11 final size:11
Alignment explanation
Indices: 99826--99856 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
99816 ATCATGTATC
99826 CGGGTTGGGTA
1 CGGGTTGGGTA
*
99837 CGGGTTGTGTA
1 CGGGTTGGGTA
99848 CGGGTTGGG
1 CGGGTTGGG
99857 GGTGTTACAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.06, C:0.10, G:0.55, T:0.29
Consensus pattern (11 bp):
CGGGTTGGGTA
Found at i:101617 original size:31 final size:31
Alignment explanation
Indices: 101574--101642 Score: 120
Period size: 31 Copynumber: 2.2 Consensus size: 31
101564 TCGTAGATCT
101574 TCAACGAGGCCTCGGAGAATTTGTTTAGTCTA
1 TCAA-GAGGCCTCGGAGAATTTGTTTAGTCTA
*
101606 TGAAGAGGCCTCGGAGAATTTGTTTAGTCTA
1 TCAAGAGGCCTCGGAGAATTTGTTTAGTCTA
101637 TCAAGA
1 TCAAGA
101643 ACCCAAGTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
31 32 0.91
32 3 0.09
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (31 bp):
TCAAGAGGCCTCGGAGAATTTGTTTAGTCTA
Found at i:116945 original size:43 final size:43
Alignment explanation
Indices: 116897--116989 Score: 159
Period size: 43 Copynumber: 2.2 Consensus size: 43
116887 ATTTGAAAAT
* *
116897 ATCATGCACTGAAGGTCTTATGGATGGCCCGAAAGACTTACGC
1 ATCATGCACTGAAGGTCTTATGGATGACCCGAAAGACATACGC
*
116940 ATCATGCACTGAAGGTCTTATGGATGACCCGAATGACATACGC
1 ATCATGCACTGAAGGTCTTATGGATGACCCGAAAGACATACGC
116983 ATCATGC
1 ATCATGC
116990 TCGAAAGACT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (43 bp):
ATCATGCACTGAAGGTCTTATGGATGACCCGAAAGACATACGC
Found at i:117142 original size:132 final size:132
Alignment explanation
Indices: 116939--117244 Score: 524
Period size: 132 Copynumber: 2.3 Consensus size: 132
116929 AAGACTTACG
* * * *
116939 CATCATGCACTGAAGGTCTTATGGATGACCCGAATGACATACGCATCATGCTCGAAAGACTTACT
1 CATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACT
*
117004 GATGGCCTGAAGGACTTACAAATCAAGAAA-CCCCTGAAGGCTTAGTTTCTAAAATCTCATTTGA
66 GATGGCCCGAAGGACTTACAAATCAAGAAATCCCC-GAAGGCTTAGTTTCTAAAATCTCATTTGA
117068 AAA
130 AAA
* *
117071 CATCCTGCACTGAAGGTCTTATGGTTGGCCTGAAGGACTTACGCATCATGCTCGAAAGACTTACT
1 CATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACT
*
117136 GATGGCCCGGAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
66 GATGGCCCGAAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
117201 AA
131 AA
117203 CATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
1 CATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
117245 AAATCAAGAA
Statistics
Matches: 163, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
132 159 0.98
133 4 0.02
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (132 bp):
CATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACT
GATGGCCCGAAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AA
Found at i:117289 original size:90 final size:90
Alignment explanation
Indices: 117136--117622 Score: 795
Period size: 90 Copynumber: 5.5 Consensus size: 90
117126 AAGACTTACT
* * *
117136 GATGGCCCGGAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
117201 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
117226 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAATGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
117291 AACATCCTACACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
117316 GATGGCCCGAAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
117381 AAACATCCTGCACTGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* *
117407 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAAAATCTCA-TTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
117471 AA-ATCTTGCACTGAAGGT-TTA--
66 AACATCCTGCACTGAAGGTCTTATG
* *
117492 GATGGCACGAAGGACTTACAAATCAAGAAACCCCCGAAGGTTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
117557 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * *
117582 GATGACTCGAAGGACTTACAAATCAAGAAACCTCCGAAGGC
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGC
117623 CACAATCAAG
Statistics
Matches: 368, Mismatches: 23, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
85 55 0.15
86 7 0.02
87 18 0.05
88 18 0.05
89 7 0.02
90 178 0.48
91 85 0.23
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:117621 original size:266 final size:270
Alignment explanation
Indices: 117136--119002 Score: 1151
Period size: 312 Copynumber: 6.4 Consensus size: 270
117126 AAGACTTACT
*
117136 GATGGCCCGGAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
117201 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAATG
66 AACATCCTGCACTGAAGGTCTTA-GGATGGCACGAAGGACTTACAAATCAAGAAACCCCCGAAGG
*
117266 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTACACTGAAGGTCTTATGGATGGCCCGAAGGAC
130 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTACACTGAAGGTCTTATGGATGACCCGAAGGAC
117331 TTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACTG
195 TTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACTG
117396 AAGGTCTTATG
260 AAGGTCTTATG
117407 GATGGCCCGAAGGACTTACAAATCAAGAAA-CCCCTGAAGGCTTAGTTTCTAAAATCTCA-TTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAATCCCC-GAAGGCTTAGTTTCTAAAATCTCATTTGA
*
117470 AAA-ATCTTGCACTGAAGGT-TTA-GATGGCACGAAGGACTTACAAATCAAGAAACCCCCGAAGG
65 AAACATCCTGCACTGAAGGTCTTAGGATGGCACGAAGGACTTACAAATCAAGAAACCCCCGAAGG
* * *
117532 TTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGACTCGAAGGAC
130 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTACACTGAAGGTCTTATGGATGACCCGAAGGAC
* *
117597 TTACAAATCAAGAAACCTCCGAAGGCCACAATCAAGAAACCCCGAGGTTTAGTTTCTT-AAATCT
195 TTACAAATCAAGAAA--T-------CC-C---C--G--A-----AGGCTTAGTTTCTTAAAATTT
117661 CATTTGAAAACATCCTGCACTGAAGGTCTTATG
238 CATTTGAAAACATCCTGCACTGAAGGTCTTATG
* * *
117694 GATGACTCG-AGGACTTAC-AATCAAGAAA-CCTCCGAAGGCCTAGTTT-TATGGATGGCCCGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAATCC-CCGAAGGCTTAGTTTCTA---A-------AA
* ** * ** * * * * * ** * *
117755 GGACTTACAAATCAGAAACCCCCCGAAGGCT-TAGTTTCTTA-AATCTCATTTGAA-AACATCCT
55 --TC-T-CATTTGA-AAACATCCTGCA--CTGAAG-GTCTTAGGATGGCA--CGAAGGAC-T--T
* * *** *** ** * *
117817 ACACTGAAAGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTT
107 --AC--AAA-TC--AAGAAACCCCCGAAGG-CTTA-GTTTC---TTA------AA-TCTCA---T
* * * * * *
117882 TTTAAATC-TCATTTGAAAACATCCTGAA---CTGAAGGTCTTATAGATGGCCCGAAGAACTTAC
150 TTGAAAACATC--CT----ACA--CTGAAGGTCTTATGG----AT-GA---CCCGAAGGACTTAC
* * *
117943 AAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACGTCCTGCACTGAAGG
199 AAATCAAGAAATCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACTGAAGG
118007 TCTTATG
264 TCTTATG
*
118014 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAAT-TCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTC-TAAAATCTCATTTGA
*
118078 AAACATCCTGCACTGAAGGTCTAATA-GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAA
65 AAACATCCTGCACTGAAGGTCT--TAGGATGGCACGAAGGACTTACAAATCAAGAAACCCCCGAA
* * *
118142 GGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGG
128 GGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTACACTGAAGGTCTTATGGATGACCCGAAGG
* * * * *** **
118207 TCTTACGCATCATGCTCGAAAGACTAACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCG
193 ACTTA--CA--A--ATC--AAG---AA---AT-CCCCGAAGG-CTTA-GTTTC-TTAAA------
* ** *
118272 ATGGCTT-AGTTTCTAAAATCTCATTTGAAAACATCCTATACTAAAGGTCTTATG
234 AT---TTCA-TTT-GAAAA---C----------ATCCTGCACTGAAGGTCTTATG
* * * * *
118326 GATGGCCCGAATGACTTACAAATCAAGAAACCCCCGAAGGCATAATTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
118391 AACATCCTGCACTGAAGGTCTTATGGGTGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
66 AACATCCTGCACTGAAGGTCTTA-GGATGGCACGAAGGACTTACAAATCAAGAAACCCCCGAAGG
* * * * * * *
118456 CTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACTGAAAGTGTTATGGATGGCCCAAAGGA
130 CTTAGTTTCTT-AAATCTCATTTGAAAACATCCTACACTGAAGGTCTTATGGATGACCCGAAGGA
* * * * *
118521 CTTACAAAACAAGAAA-CTCCTGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTACAT
194 CTTACAAATCAAGAAATC-CCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCAC
*
118584 TGAAGTTCTTATG
258 TGAAGGTCTTATG
* * *
118597 GATGGCTCGAAGGACTTACAAATAAAGAAA-CCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * * * *
118661 AATATCTTGCACTAAAGGTCTTATGGATGGCCCGAAGGACTTACAAATTAAGAAAGCTCCGAAGG
66 AACATCCTGCACTGAAGGTCTTA-GGATGGCACGAAGGACTTACAAATCAAGAAACCCCCGAAGG
*
118726 CTTAGTTTTTTAAATCTCATTTGAAAACATCCTGCACTGAAATTGAAAACATCTTGCACTGAAGG
130 CTTAGTTTCTTAAATCTCATTTGAAAACA---T-C-C------T------A-----CACTGAAGG
* * * *
118791 TCTCATGGATGGCCTGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTT
173 TCTTATGGATGACCCGAAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTTAAAATTT
* *
118856 CATTTGAAAACATCCTTCACTGAAAGTCTTATG
238 CATTTGAAAACATCCTGCACTGAAGGTCTTATG
* *
118889 GAT-GCCCGAAGGACTTACAAATCAATAAACCCCCGAAGGCTTAGTTTC-ATAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTA-AAATCTCATTTGA
118952 AAACATCCTGCACTGAAGGTCTTATGGATGGC-CTGAAGGACTTACAAATCA
65 AAACATCCTGCACTGAAGGTCTTA-GGATGGCAC-GAAGGACTTACAAATCA
119003 TGCTCGAAAG
Statistics
Matches: 1249, Mismatches: 170, Indels: 333
0.71 0.10 0.19
Matches are distributed among these distances:
266 114 0.09
268 4 0.00
269 32 0.03
270 122 0.10
271 98 0.08
272 3 0.00
273 2 0.00
274 3 0.00
275 7 0.01
276 3 0.00
277 2 0.00
278 8 0.01
279 1 0.00
280 1 0.00
281 5 0.00
282 7 0.01
283 3 0.00
284 7 0.01
285 38 0.03
286 18 0.01
287 48 0.04
288 15 0.01
289 2 0.00
291 82 0.07
292 116 0.09
294 4 0.00
295 4 0.00
296 7 0.01
297 17 0.01
298 12 0.01
299 9 0.01
300 6 0.00
301 3 0.00
302 7 0.01
303 3 0.00
304 8 0.01
305 5 0.00
306 13 0.01
307 5 0.00
308 14 0.01
309 5 0.00
310 5 0.00
311 7 0.01
312 146 0.12
313 53 0.04
314 2 0.00
315 11 0.01
316 3 0.00
317 2 0.00
320 59 0.05
321 10 0.01
322 24 0.02
323 2 0.00
324 2 0.00
325 1 0.00
326 2 0.00
327 4 0.00
329 3 0.00
330 7 0.01
331 1 0.00
332 1 0.00
333 2 0.00
334 5 0.00
335 2 0.00
337 5 0.00
338 2 0.00
339 2 0.00
342 23 0.02
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (270 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTAGGATGGCACGAAGGACTTACAAATCAAGAAACCCCCGAAGGC
TTAGTTTCTTAAATCTCATTTGAAAACATCCTACACTGAAGGTCTTATGGATGACCCGAAGGACT
TACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACTGA
AGGTCTTATG
Found at i:117753 original size:112 final size:112
Alignment explanation
Indices: 117512--117733 Score: 412
Period size: 112 Copynumber: 2.0 Consensus size: 112
117502 AGGACTTACA
117512 AATCAAGAAACCCCCGAAGGTTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTC
1 AATCAAGAAA-CCCCG-AGGTTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTC
117577 TTATGGATGACTCGAAGGACTTACAAATCAAGAAACCTCCGAAGGCCAC
64 TTATGGATGACTCGAAGGACTTACAAATCAAGAAACCTCCGAAGGCCAC
117626 AATCAAGAAACCCCGAGGTTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTT
1 AATCAAGAAACCCCGAGGTTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTT
117691 ATGGATGACTCG-AGGACTTAC-AATCAAGAAACCTCCGAAGGCC
66 ATGGATGACTCGAAGGACTTACAAATCAAGAAACCTCCGAAGGCC
117734 TAGTTTTATG
Statistics
Matches: 108, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
110 22 0.20
111 9 0.08
112 62 0.57
113 5 0.05
114 10 0.09
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.24
Consensus pattern (112 bp):
AATCAAGAAACCCCGAGGTTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTT
ATGGATGACTCGAAGGACTTACAAATCAAGAAACCTCCGAAGGCCAC
Found at i:117764 original size:51 final size:51
Alignment explanation
Indices: 117689--117791 Score: 138
Period size: 52 Copynumber: 2.0 Consensus size: 51
117679 ACTGAAGGTC
* *
117689 TTATGGATGACTCGAGGACTTAC-AATCAAGAAA-CCTCCGAAGGCCTAGTT
1 TTATGGATGACCCGAGGACTTACAAATC-AGAAACCCCCCGAAGGCCTAGTT
* *
117739 TTATGGATGGCCCGAAGGACTTACAAATCAGAAACCCCCCGAAGGCTTAGTT
1 TTATGGATGACCCG-AGGACTTACAAATCAGAAACCCCCCGAAGGCCTAGTT
117791 T
1 T
117792 CTTAAATCTC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
50 12 0.26
51 14 0.30
52 20 0.43
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.23
Consensus pattern (51 bp):
TTATGGATGACCCGAGGACTTACAAATCAGAAACCCCCCGAAGGCCTAGTT
Found at i:117892 original size:90 final size:90
Alignment explanation
Indices: 117739--118212 Score: 817
Period size: 90 Copynumber: 5.3 Consensus size: 90
117729 AGGCCTAGTT
117739 TTATGGATGGCCCGAAGGACTTACAAATC-AGAAACCCCCCGAAGGCTTAGTTTCTTAAATCTCA
1 TTATGGATGGCCCGAAGGACTTACAAATCAAGAAA-CCCCCGAAGGCTTAGTTTCTTAAATCTCA
* *
117803 TTTGAAAACATCCTACACTGAAAGTC
65 TTTGAAAACATCCTGCACTGAAGGTC
*
117829 TTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTTTAAATCTCAT
1 TTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCAT
*
117894 TTGAAAACATCCTGAACTGAAGGTC
66 TTGAAAACATCCTGCACTGAAGGTC
* *
117919 TTATAGATGGCCCGAAGAACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCAT
1 TTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCAT
*
117984 TTGAAAACGTCCTGCACTGAAGGTC
66 TTGAAAACATCCTGCACTGAAGGTC
118009 TTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAAT-TCA
1 TTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCA
118073 TTTGAAAACATCCTGCACTGAAGGTC
65 TTTGAAAACATCCTGCACTGAAGGTC
* * *
118099 TAATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCAT
1 TTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCAT
118164 TTGAAAACATCCTGCACTGAAGGTC
66 TTGAAAACATCCTGCACTGAAGGTC
*
118189 TTATGGATGGCCCGAAGGTCTTAC
1 TTATGGATGGCCCGAAGGACTTAC
118213 GCATCATGCT
Statistics
Matches: 363, Mismatches: 18, Indels: 6
0.94 0.05 0.02
Matches are distributed among these distances:
89 4 0.01
90 350 0.96
91 9 0.02
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.26
Consensus pattern (90 bp):
TTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCAT
TTGAAAACATCCTGCACTGAAGGTC
Found at i:118046 original size:180 final size:180
Alignment explanation
Indices: 117739--118766 Score: 1175
Period size: 180 Copynumber: 5.5 Consensus size: 180
117729 AGGCCTAGTT
117739 TTATGGATGGCCCGAAGGACTTACAAATC-AGAAACCCCCCGAAGGCTTAGTTTCTTAAATCTCA
1 TTATGGATGGCCCGAAGGACTTACAAATCAAGAAA-CCCCCGAAGGCTTAGTTTCTTAAATCTCA
* *
117803 TTTGAAAACATCCTACACTGAAAGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCC
65 TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCC
* *
117868 CGAAGGCTTAGTTTTTTAAATCTCATTTGAAAACATCCTGAACTGAAGGTC
130 CGAAGGCTTAGTTTTTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTC
* *
117919 TTATAGATGGCCCGAAGAACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCAT
1 TTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCAT
*
117984 TTGAAAACGTCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCC
66 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCC
118049 GAAGGCTTAGTTTCTTAAAAT-TCATTTGAAAACATCCTGCACTGAAGGTC
131 GAAGGCTTAGTTT-TTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTC
* * *
118099 TAATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCAT
1 TTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCAT
* *
118164 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAG
66 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTA--CA--A--ATC--AAG
* * * **** * *
118229 ACTAACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGATGGCTTAGTTTCTAAAATC-T
123 A--AAC-----CCCCGAAGG-CTT---AGTTTTTAAA------AT--CTCA-TTT-GAAAA-CAT
* *
118293 CATTTGAAAACATCCTATACTAAAGGTC
166 C--CTG--------C---ACTGAAGGTC
* * *
118321 TTATGGATGGCCCGAATGACTTACAAATCAAGAAACCCCCGAAGGCATAATTTCTTAAATCTCAT
1 TTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCAT
*
118386 TTGAAAACATCCTGCACTGAAGGTCTTATGGGTGGCCCGAAGGACTTACAAATCAAGAAACCCCC
66 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCC
* * * *
118451 GAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACTGAAAGTG
131 GAAGGCTTAGTTT-TTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTC
* * * *
118502 TTATGGATGGCCCAAAGGACTTACAAAACAAGAAACTCCTGAAGGCTTAGTTTCTTAAATCTCAT
1 TTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCAT
* * * * *
118567 TTGAAAACATCCTACATTGAAGTTCTTATGGATGGCTCGAAGGACTTACAAATAAAGAAA-CCCC
66 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCC
* * *
118631 GAAGGCTTAGTTTCTT-AAATCTCATTTGAAAATATCTTGCACTAAAGGTC
131 GAAGGCTTAGTTT-TTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTC
* * * *
118681 TTATGGATGGCCCGAAGGACTTACAAATTAAGAAAGCTCCGAAGGCTTAGTTTTTTAAATCTCAT
1 TTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCAT
118746 TTGAAAACATCCTGCACTGAA
66 TTGAAAACATCCTGCACTGAA
118767 ATTGAAAACA
Statistics
Matches: 724, Mismatches: 76, Indels: 97
0.81 0.08 0.11
Matches are distributed among these distances:
179 104 0.14
180 288 0.40
181 130 0.18
182 2 0.00
184 2 0.00
186 2 0.00
188 4 0.01
190 3 0.00
192 2 0.00
193 1 0.00
194 6 0.01
195 10 0.01
196 5 0.01
198 5 0.01
199 2 0.00
203 2 0.00
204 5 0.01
206 3 0.00
207 9 0.01
208 3 0.00
209 6 0.01
210 1 0.00
211 2 0.00
212 3 0.00
214 4 0.01
216 2 0.00
218 1 0.00
219 1 0.00
220 2 0.00
222 114 0.16
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (180 bp):
TTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCAT
TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCC
GAAGGCTTAGTTTTTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTC
Found at i:118344 original size:132 final size:132
Alignment explanation
Indices: 118104--118344 Score: 419
Period size: 132 Copynumber: 1.8 Consensus size: 132
118094 AGGTCTAATA
118104 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
118169 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTAA
66 AACATCCTACACTAAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTAA
118234 CT
131 CT
* *
118236 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGATGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
118301 AACATCCTATACTAAAGGTCTTATGGATGGCCCGAATGACTTAC
66 AACATCCTACACTAAAGGTCTTATGGATGGCCCGAAGGACTTAC
118345 AAATCAAGAA
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 102 1.00
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (132 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTACACTAAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTAA
CT
Found at i:118389 original size:90 final size:90
Alignment explanation
Indices: 118236--118763 Score: 763
Period size: 90 Copynumber: 5.9 Consensus size: 90
118226 AAGACTAACT
* * *
118236 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGATGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
**
118301 AACATCCTATACTAAAGGTCTTATG
66 AACATCCTGCACTAAAGGTCTTATG
* * *
118326 GATGGCCCGAATGACTTACAAATCAAGAAACCCCCGAAGGCATAATTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
118391 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTAAAGGTCTTATG
* *
118416 GGTGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* *
118481 AAACATCATGCACTGAAA-GTGTTATG
65 AAACATCCTGCACT-AAAGGTCTTATG
* * * *
118507 GATGGCCCAAAGGACTTACAAAACAAGAAACTCCTGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * *
118572 AACATCCTACATTGAAGTTCTTATG
66 AACATCCTGCACTAAAGGTCTTATG
* *
118597 GATGGCTCGAAGGACTTACAAATAAAGAAA-CCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
118661 AATATCTTGCACTAAAGGTCTTATG
66 AACATCCTGCACTAAAGGTCTTATG
* * * *
118686 GATGGCCCGAAGGACTTACAAATTAAGAAAGCTCCGAAGGCTTAGTTTTTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
118751 AACATCCTGCACT
66 AACATCCTGCACT
118764 GAAATTGAAA
Statistics
Matches: 387, Mismatches: 47, Indels: 8
0.88 0.11 0.02
Matches are distributed among these distances:
89 81 0.21
90 226 0.58
91 78 0.20
92 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTAAAGGTCTTATG
Found at i:118400 original size:222 final size:222
Alignment explanation
Indices: 118014--118434 Score: 709
Period size: 222 Copynumber: 1.9 Consensus size: 222
118004 AGGTCTTATG
118014 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTCATTTGAA
* *
118079 AACATCCTGCACTGAAGGTCTAATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
66 AACATCCTACACTAAAGGTCTAATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
* * *
118144 CTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGTC
131 CATAATTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAC
118209 TTACGCATCATGCTCGAAAGACTAACT
196 TTACGCATCATGCTCGAAAGACTAACT
* *
118236 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGATGGCTTAGTTTC-TAAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAAT-TCATTTGA
* * * *
118300 AAACATCCTATACTAAAGGTCTTATGGATGGCCCGAATGACTTACAAATCAAGAAACCCCCGAAG
65 AAACATCCTACACTAAAGGTCTAATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* *
118365 GCATAATTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGGTGGCCCGAAGGA
130 GCATAATTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGA
118430 CTTAC
195 CTTAC
118435 AAATCAAGAA
Statistics
Matches: 185, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
221 6 0.03
222 179 0.97
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.24
Consensus pattern (222 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTCATTTGAA
AACATCCTACACTAAAGGTCTAATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
CATAATTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAC
TTACGCATCATGCTCGAAAGACTAACT
Found at i:118558 original size:181 final size:180
Alignment explanation
Indices: 118236--118766 Score: 791
Period size: 181 Copynumber: 3.0 Consensus size: 180
118226 AAGACTAACT
* *
118236 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGATGGCTTAGTTTC-TAAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* ** * *
118300 AAACATCCTATACTAAAGGTCTTATGGATGGCCCGAATGACTTACAAATCAAGAAACCCCCGAAG
66 AAACATCATGCACTAAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAA-CTCCGAAG
* *
118365 GCATAATTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
130 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
* *
118416 GGTGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* * *
118481 AAACATCATGCACTGAAA-GTGTTATGGATGGCCCAAAGGACTTACAAAACAAGAAACTCCTGAA
66 AAACATCATGCACT-AAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACTCC-GAA
* * *
118545 GGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTACATTGAAGTTCTTATG
129 GGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
* *
118597 GATGGCTCGAAGGACTTACAAATAAAGAAA-CCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* * *
118660 AAATATCTTGCACTAAAGGTCTTATGGATGGCCCGAAGGACTTACAAATTAAGAAAGCTCCGAAG
66 AAACATCATGCACTAAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAA-CTCCGAAG
*
118725 GCTTAGTTTTTTAAATCTCATTTGAAAACATCCTGCACTGAA
130 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAA
118767 ATTGAAAACA
Statistics
Matches: 316, Mismatches: 30, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
178 3 0.01
179 101 0.32
180 73 0.23
181 136 0.43
182 3 0.01
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (180 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
AAACATCATGCACTAAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACTCCGAAGG
CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
Found at i:118681 original size:492 final size:489
Alignment explanation
Indices: 117226--118999 Score: 2110
Period size: 492 Copynumber: 3.6 Consensus size: 489
117216 AGGTCTTATG
117226 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAT-GCTTAGTTTCTTAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCG-ATGGCTTAGTTTC-TAAATCTCATTTGA
* *
117290 AAACATCCTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAATCCCCGAAG
64 AAACATCCTACACTAAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
*
117355 GCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGG
129 GCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGG
* * *
117420 ACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAAAATCTCA-TTGAAAA-ATCTTGCACT
193 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACT
* * *
117483 GAAGGT-TTA--GATGGCACGAAGGACTTACAAATCAAGAAACCCCCGAAGGTTTAGTTTCTT-A
258 GAAGGTCTTATGGATGGCCCGAAGGACTTACAAAACAAGAAACCCCCGAAGGCTTAGTTTCTTAA
* * * * * *
117544 AATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGACTCGAAGGACTTACAAATCAAG
323 AAT-TCATTTGAAAACATCCTACACTGAAGGTCTAATAGATGGCCCGAAGGACTTACAAATAAAG
117609 AAACCTCCGAAGGCCACAATCAAGAAACCCCGAGGTTTAGTTTCTTAAATCTCATTTGAAAACAT
387 AAACC-CCGAA-G----------G------C-----TTAGTTTCTTAAATCTCATTTGAAAACAT
* * * * * *
117674 CCTGCACTGAAGGTCTTATGGATGACTCG-AGGACTTACAATCAAGAAACCTCCGAAGGCCTAGT
429 CCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACCATCATG----CTACGAAAG-CTA--
117738 TTTA-T
487 ---ACT
*
117743 GGATGGCCCGAAGGACTTACAAATC-AGAAACCCCCCGAAGGCTTAGTTTCTTAAATCTCATTTG
1 -GATGGCCCGAAGGACTTACAAATCAAGAAA-CCCCCGATGGCTTAGTTTC-TAAATCTCATTTG
117807 AAAACATCCTACACTGAAA-GTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGA
63 AAAACATCCTACACT-AAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGA
* * *
117871 AGGCTTAGTTTTTTAAATCTCATTTGAAAACATCCTGAACTGAAGGTCTTATAGATGGCCCGAAG
127 AGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAG
* *
117936 AACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACGTCCTGCAC
192 GACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCAC
*
118001 TGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTA
257 TGAAGGTCTTATGGATGGCCCGAAGGACTTACAAAACAAGAAACCCCCGAAGGCTTAGTTTCTTA
* *
118066 AAATTCATTTGAAAACATCCTGCACTGAAGGTCTAATAGATGGCCCGAAGGACTTACAAATCAAG
322 AAATTCATTTGAAAACATCCTACACTGAAGGTCTAATAGATGGCCCGAAGGACTTACAAATAAAG
*
118131 AAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGA
387 AAA-CCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGA
*
118196 TGGCCCGAAGGTCTTACGCATCATGCT-CGAAAGACTAACT
451 TGGCCCGAAGGACTTAC-CATCATGCTACGAAAG-CTAACT
*
118236 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGATGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGATGGCTTAGTTTCT-AAATCTCATTTGAA
* *
118301 AACATCCTATACTAAAGGTCTTATGGATGGCCCGAATGACTTACAAATCAAGAAACCCCCGAAGG
65 AACATCCTACACTAAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
* * *
118366 CATAATTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGGTGGCCCGAAGGAC
130 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAC
* *
118431 TTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACTG
195 TTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCACTG
* * * * *
118496 AAAGTGTTATGGATGGCCCAAAGGACTTACAAAACAAGAAACTCCTGAAGGCTTAGTTTCTT-AA
259 AAGGTCTTATGGATGGCCCGAAGGACTTACAAAACAAGAAACCCCCGAAGGCTTAGTTTCTTAAA
* * * * *
118560 ATCTCATTTGAAAACATCCTACATTGAAGTTCTTATGGATGGCTCGAAGGACTTACAAATAAAGA
324 AT-TCATTTGAAAACATCCTACACTGAAGGTCTAATAGATGGCCCGAAGGACTTACAAATAAAGA
* * *
118625 AACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAATATCTTGCACTAAAGGTCTTATGGATG
388 AACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATG
* * *
118690 GCCCGAAGGACTTA-CA-AAT--TAAGAAAGCT--CC
453 GCCCGAAGGACTTACCATCATGCTACGAAAGCTAACT
* ** *** * * ** *
118721 GAAGG--CTTAGTTTTTTA-AATCTCATTTGAAAACATCC--T-GC--A----CTGAA----A-T
1 GATGGCCCGAAG-GACTTACAA-ATCA--AG-AAACCCCCGATGGCTTAGTTTCTAAATCTCATT
* * * * *
118769 TGAAAACATCTTGCACTGAAGGTCTCATGGATGGCCTGAAGGACTTACAAATCAAGAAACCCCCG
61 TGAAAACATCCTACACTAAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCG
* * *
118834 AAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTTCACTGAAAGTCTTATGGAT-GCCCGA
126 AAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGA
* *
118898 AGGACTTACAAATCAATAAACCCCCGAAGGCTTAGTTTCATAAATCTCATTTGAAAACATCCTGC
190 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
*
118963 ACTGAAGGTCTTATGGATGGCCTGAAGGACTTACAAA
255 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAA
119000 TCATGCTCGA
Statistics
Matches: 1138, Mismatches: 93, Indels: 97
0.86 0.07 0.07
Matches are distributed among these distances:
471 55 0.05
472 117 0.10
473 39 0.03
477 2 0.00
478 2 0.00
482 1 0.00
483 5 0.00
484 8 0.01
485 6 0.01
486 1 0.00
487 9 0.01
488 5 0.00
489 2 0.00
490 2 0.00
491 4 0.00
492 285 0.25
493 144 0.13
497 8 0.01
498 2 0.00
500 55 0.05
501 8 0.01
502 5 0.00
505 1 0.00
511 1 0.00
517 98 0.09
518 133 0.12
519 16 0.01
520 3 0.00
521 1 0.00
522 114 0.10
523 6 0.01
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (489 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGATGGCTTAGTTTCTAAATCTCATTTGAAA
ACATCCTACACTAAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGC
TTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACT
TACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAA
GGTCTTATGGATGGCCCGAAGGACTTACAAAACAAGAAACCCCCGAAGGCTTAGTTTCTTAAAAT
TCATTTGAAAACATCCTACACTGAAGGTCTAATAGATGGCCCGAAGGACTTACAAATAAAGAAAC
CCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCC
CGAAGGACTTACCATCATGCTACGAAAGCTAACT
Found at i:118774 original size:22 final size:22
Alignment explanation
Indices: 118746--118788 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
118736 TAAATCTCAT
118746 TTGAAAACATCCTGCACTGAAA
1 TTGAAAACATCCTGCACTGAAA
*
118768 TTGAAAACATCTTGCACTGAA
1 TTGAAAACATCCTGCACTGAA
118789 GGTCTCATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.21, G:0.14, T:0.26
Consensus pattern (22 bp):
TTGAAAACATCCTGCACTGAAA
Found at i:118922 original size:90 final size:90
Alignment explanation
Indices: 118768--119002 Score: 375
Period size: 90 Copynumber: 2.6 Consensus size: 90
118758 TGCACTGAAA
*
118768 TTGAAAACAT-CTTGCACTGAAGGTCTCATGGATGGCCTGAAGGACTTACAAATCAAGAAACCCC
1 TTGAAAACATCCTT-CACTGAAGGTCTTATGGATGGCCTGAAGGACTTACAAATCAAGAAACCCC
* *
118832 CGAAGGCTTAGTTTCTTAAAATTTCAT
65 CGAAGGCTTAGTTTCAT-AAATCTCAT
* * *
118859 TTGAAAACATCCTTCACTGAAAGTCTTATGGAT-GCCCGAAGGACTTACAAATCAATAAACCCCC
1 TTGAAAACATCCTTCACTGAAGGTCTTATGGATGGCCTGAAGGACTTACAAATCAAGAAACCCCC
118923 GAAGGCTTAGTTTCATAAATCTCAT
66 GAAGGCTTAGTTTCATAAATCTCAT
*
118948 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCTGAAGGACTTACAAATCA
1 TTGAAAACATCCTTCACTGAAGGTCTTATGGATGGCCTGAAGGACTTACAAATCA
119003 TGCTCGAAAG
Statistics
Matches: 133, Mismatches: 9, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
89 39 0.29
90 64 0.48
91 27 0.20
92 3 0.02
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.27
Consensus pattern (90 bp):
TTGAAAACATCCTTCACTGAAGGTCTTATGGATGGCCTGAAGGACTTACAAATCAAGAAACCCCC
GAAGGCTTAGTTTCATAAATCTCAT
Found at i:118927 original size:202 final size:201
Alignment explanation
Indices: 118567--118968 Score: 605
Period size: 202 Copynumber: 2.0 Consensus size: 201
118557 TAAATCTCAT
* * *
118567 TTGAAAACATCCTACATTGAAGTTCTTATGGATGGCTCGAAGGACTTACAAATAAAGAAACCCCG
1 TTGAAAACATCCTACACTGAAGGTCTCATGGATGGCTCGAAGGACTTACAAATAAAGAAACCCCG
*
118632 AAGGCTTAGTTTCTTAAATCTCATTTGAAAATATCTTGCACTAAAGGTCTTATGGATGGCCCGAA
66 AAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCTTGCACTAAAGGTCTTATGGATGGCCCGAA
* * * **
118697 GGACTTACAAATTAAGAAAGCTCCGAAGGCTTAGTTTTTTAAATCTCATTTGAAAACATCCTGCA
131 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCATAAATCTCATTTGAAAACATCCTGCA
118762 CTGAAA
196 CTGAAA
* * *
118768 TTGAAAACATCTTGCACTGAAGGTCTCATGGATGGC-CTGAAGGACTTACAAATCAAGAAACCCC
1 TTGAAAACATCCTACACTGAAGGTCTCATGGATGGCTC-GAAGGACTTACAAATAAAGAAA-CCC
*
118832 CGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTT-CACTGAAA-GTCTTATGGAT-GC
64 CGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACAT-CTTGCACT-AAAGGTCTTATGGATGGC
*
118894 CCGAAGGACTTACAAATCAATAAACCCCCGAAGGCTTAGTTTCATAAATCTCATTTGAAAACATC
126 CCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCATAAATCTCATTTGAAAACATC
118959 CTGCACTGAA
191 CTGCACTGAA
118969 GGTCTTATGG
Statistics
Matches: 182, Mismatches: 14, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
200 1 0.01
201 52 0.29
202 91 0.50
203 32 0.18
204 6 0.03
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (201 bp):
TTGAAAACATCCTACACTGAAGGTCTCATGGATGGCTCGAAGGACTTACAAATAAAGAAACCCCG
AAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCTTGCACTAAAGGTCTTATGGATGGCCCGAA
GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCATAAATCTCATTTGAAAACATCCTGCA
CTGAAA
Found at i:119077 original size:133 final size:133
Alignment explanation
Indices: 118893--119135 Score: 434
Period size: 133 Copynumber: 1.8 Consensus size: 133
118883 CTTATGGATG
*
118893 CCCGAAGGACTTACAAATCAATAAACCCCCGAAGGCTTAGTTTCATAAATCTCATTTGAAAACAT
1 CCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCATAAATCTCATTTGAAAACAT
*
118958 CCTGCACTGAAGGTCTTATGGATGGCCTGAAGGACTTACAAATCATGCTCGAAAGACTTACTGAT
66 CCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGAT
119023 AGC
131 AGC
* *
119026 CCCGGAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTC-TAAAATCTCATTTGAAAACA
1 CCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCAT-AAATCTCATTTGAAAACA
119090 TCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
65 TCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
119136 AGAAACCCTC
Statistics
Matches: 105, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
132 1 0.01
133 104 0.99
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (133 bp):
CCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCATAAATCTCATTTGAAAACAT
CCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGAT
AGC
Found at i:119194 original size:91 final size:90
Alignment explanation
Indices: 119026--119316 Score: 435
Period size: 90 Copynumber: 3.2 Consensus size: 90
119016 TACTGATAGC
* *
119026 CCCGGAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTC-TAAAATCTCATTTGAAAACA
1 CCCGAAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACA
119090 TCCTGCACTGAAGGTCTTATGGATGG
65 TCCTGCACTGAAGGTCTTATGGATGG
*
119116 CCCGAAGGACTTACAAATCAAGAAACCCTCGAAAGCTTAGTTTCTTAAAATTTCATTTGAAAACA
1 CCCGAAGGACTTACAAATCAAGAAACCC-CGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACA
* *
119181 TCCTGCACGGAAGGTCTTATGGATGA
65 TCCTGCACTGAAGGTCTTATGGATGG
** * *
119207 CCCGAATAACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTTCTT--AATTCTCATTTGAAAAT
1 CCCGAAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTTAAAATT-TCATTTGAAAAC
*
119270 ATCCTGCACTGAAGGTCTTATGGATTG
64 ATCCTGCACTGAAGGTCTTATGGATGG
119297 CCCGAAGGACTTACAAATCA
1 CCCGAAGGACTTACAAATCA
119317 TGCTCGAAAG
Statistics
Matches: 181, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
89 7 0.04
90 90 0.50
91 81 0.45
92 3 0.02
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.27
Consensus pattern (90 bp):
CCCGAAGGACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACAT
CCTGCACTGAAGGTCTTATGGATGG
Found at i:119353 original size:313 final size:313
Alignment explanation
Indices: 118768--119443 Score: 1104
Period size: 313 Copynumber: 2.2 Consensus size: 313
118758 TGCACTGAAA
* * *
118768 TTGAAAACATCTTGCACTGAAGGTCTCATGGATGGCCTGAAGGACTTACAAATCAAGAAACCCCC
1 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCC
* * *
118833 GAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTTCACTGAAAGTCTTATGGATGCCCGA
66 GAAAGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACGGAAAGTCTTATGGATGCCCGA
* *
118898 AGGACTTACAAATCAATAAACCCCCGAAGGCTTAGTTTCATAAATCTCATTTGAAAACATCCTGC
131 AGAACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCATAAATCTCATTTGAAAACATCCTGC
*
118963 ACTGAAGGTCTTATGGATGGCCTGAAGGACTTACAAATCATGCTCGAAAGACTTACTGATAGCCC
196 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGATAGCCC
*
119028 CGGAGGACTTACAAATCAAGAAATCCC-CGAAGGCTTAGTTTCTAAAATCTCAT
261 CGGAGAACTTACAAATCAAGAAA-CCCTCGAAGGCTTAGTTTCTAAAATCTCAT
*
119081 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCTC
1 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCC
*
119146 GAAAGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACGGAAGGTCTTATGGATGACCCG
66 GAAAGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACGGAAAGTCTTATGGATG-CCCG
* * * * *
119211 AATAACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTTCTTAATTCTCATTTGAAAATATCCTG
130 AAGAACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCATAAATCTCATTTGAAAACATCCTG
* *
119276 CACTGAAGGTCTTATGGATTGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGAT-GGC
195 CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGATAGCC
* * *
119340 TCGGAGAACTTACAAATCAAGAAACCCTTGAAGGCTTAGTTTGTAAAATCTCAT
260 CCGGAGAACTTACAAATCAAGAAACCCTCGAAGGCTTAGTTTCTAAAATCTCAT
* *
119394 TTGAAAACATACTGCACTGAAGGTCTTATGGATGGCCCGAACGACTTACA
1 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACA
119444 CATTATGCTC
Statistics
Matches: 337, Mismatches: 24, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
312 3 0.01
313 213 0.63
314 121 0.36
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (313 bp):
TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCC
GAAAGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACGGAAAGTCTTATGGATGCCCGA
AGAACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCATAAATCTCATTTGAAAACATCCTGC
ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGATAGCCC
CGGAGAACTTACAAATCAAGAAACCCTCGAAGGCTTAGTTTCTAAAATCTCAT
Found at i:119452 original size:132 final size:132
Alignment explanation
Indices: 119214--121166 Score: 1998
Period size: 132 Copynumber: 14.7 Consensus size: 132
119204 TGACCCGAAT
* * * *
119214 AACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTTCTTAATTCTCATTTGAAAATATCCTGCAC
1 AACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCAC
* * *
119279 TGAAGGTCTTATGGATTGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGATGGCTCGG
66 TGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGCCCGG
119344 AG
131 AG
** * *
119346 AACTTACAAATCAAGAAACCCTTGAAGGCTTAGTTTGTAAAATCTCATTTGAAAACATACTGCAC
1 AACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCAC
* * * *
119411 TGAAGGTCTTATGGATGGCCCGAACGACTTACACATTATGCTCGAAAGACTTATTGATGGCCCAG
66 TGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGCCCGG
119476 AG
131 AG
* * *
119478 GACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAATTATCATTTGAAAACATCCTGCAC
1 AACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCAC
* *
119543 TGAAGGTCTTATGGATTGCCC-AGAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCG
66 TGAAGGTCTTATGGATGGCCCGA-AGGACTTACACATCATGCTCGAAAGACTTACTGATGGCCCG
119607 GAG
130 GAG
* * *
119610 GACTTACAAATCAAGAAACCCCCGAAGGCTTTGTTTCTAAAATCTCATTTGAAAACATCATGCAC
1 AACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCAC
** * *
119675 TGAAGGTCTTATGGATGGCCCGAAGGACTTATGCATCATGCTCCAAAGACTTACTGATGGCCC-A
66 TGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGCCCGG
*
119739 AA
131 AG
* * *
119741 ACACTTACAAATCAAGAAACCCCCGAAGGATTAGTTTCTAAAATCTCATTTTAAAGCATCCTGCA
1 A-ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCA
* *
119806 CTGAAGGTCTTATGGATGGCCCGAAGGTCTTACCCATCATGCTCGAAAGACTTACTGATGGCCCG
65 CTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGCCCG
119871 GAG
130 GAG
* * * * *
119874 GACTAAAAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAAAATATCCTGCAC
1 AACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCAC
* * * * * *
119939 GGAAGGTCTTATGGATGGTCCGAAGGACTTACAAATCAAGAAACCCCCGAATG-CTTA--G-T--
66 TGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATG-----CTCGAAAGACTTACTGATGG
** *
119998 TTC-TA-
126 CCCGGAG
* * * * * ** *** *** **
120003 AAATCT-CATATGAA-AACATCATGCGCTGAAGGTCTTATGGATGGCCCGAAGGACA--T--ACG
1 AACT-TACAAATCAAGAA-A-C---CCCCGAAGG-CTTA--G-TTTCTAAAATCTCATTTGAAAA
* * * * * * * * * *
120062 CATCATGCTC-GAAAGACTTACTGG-TGGCCTGGAGGACTTACAAATCAAGAAACCCCCG-AAGG
56 CATCCTGCACTGAAGGTCTTA-TGGATGGCCCGAAGGACTTACACATCATG-----CTCGAAAGA
** *
120124 CTTA--G-T--TTC-TA-
115 CTTACTGATGGCCCGGAG
* *** * * * **** ** * **
120135 AAATGTA-TTTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGTCCCGGA--GGACTT--ACG
1 AACT-TACAAATCAAGAA-A-CC--C-CCGAAGG-CTTA--G-TTTCTAAAATCTCATTTGAAAA
* * * * * *
120194 CATCATGCTC-GAAAGACTTACT-GATGGCCCGGTCCCGGAGGACTTACGCATCATGCTCGAAAG
56 CATCCTGCACTGAAGGTCTTA-TGGAT-----GG-CCCGAAGGACTTACACATCATGCTCGAAAG
120257 ACTTACTGATGGCCCGGAG
114 ACTTACTGATGGCCCGGAG
* *
120276 GACTTACAAATCAAGAAACCCTCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCAC
1 AACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCAC
* *
120341 TGAAGGTCTTATGGATGGCCCGAAGGTCTTACCCATCATGCTCGAAAGACTTACTGATGGCCCGG
66 TGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGCCCGG
120406 AG
131 AG
* *
120408 GACTTACAAATCAAGAAACCCCCGAAGACTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCAC
1 AACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCAC
* * * *
120473 TGAAGCTCTTATGGATGGTCCGGAGGACTTACACATTATGCTCGAAAGACTTACTGATGGCCCGG
66 TGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGCCCGG
120538 AG
131 AG
* *
120540 GACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATTCTGCAC
1 AACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCAC
* ** *
120605 TGAAGTTCTTATGGATGGCCCGAAGGACTTATGCATCATGCTCGAAAGACTTACTGATGGCCCAG
66 TGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGCCCGG
120670 AG
131 AG
* * * *
120672 GACTTACAAATCAAGAAATCTCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGCAC
1 AACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCAC
** * * * *
120737 TGAAGGTCTTATGGATGATCCGGAGGACTTACGCATCATACTCGAAAGACTTACTGATGGCCCAG
66 TGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGCCCGG
120802 AG
131 AG
* *
120804 GACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAGCATCCTGCAC
1 AACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCAC
* * * * * * *
120869 TGAAGGTCTTATGGATGGCTCGAAGGTCTTACGCATCATGCTCGAAACACTTACTAAGGGCCCAG
66 TGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGCCCGG
120934 AG
131 AG
* *
120936 GACTTACAAATCAA-AATACCCTCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCA
1 AACTTACAAATCAAGAA-ACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCA
* * ** *
121000 CTAAAGCTCTTATGGATGGCCCGGAA-GACTTACGTATCATGATCGAAAGACTTACTGATGGCCC
65 CTGAAGGTCTTATGGATGGCCC-GAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGCCC
121064 GGAG
129 GGAG
*
121068 GACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCAC
1 AACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCAC
121133 TGAAGGTCTTATGGATGGCCCGAATGAGACTTAC
66 TGAAGGTCTTATGGATGGCCCGAA-G-GACTTAC
121167 TGATGGCCCA
Statistics
Matches: 1573, Mismatches: 192, Indels: 110
0.84 0.10 0.06
Matches are distributed among these distances:
128 2 0.00
129 9 0.01
130 3 0.00
131 11 0.01
132 1405 0.89
133 35 0.02
134 20 0.01
135 4 0.00
136 10 0.01
137 30 0.02
138 30 0.02
139 1 0.00
140 5 0.00
141 6 0.00
142 2 0.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (132 bp):
AACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCAC
TGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGCCCGG
AG
Found at i:119685 original size:264 final size:264
Alignment explanation
Indices: 119215--121540 Score: 2526
Period size: 264 Copynumber: 8.9 Consensus size: 264
119205 GACCCGAATA
* * * *
119215 ACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTTCTTAATTCTCATTTGAAAATATCCTGCACT
1 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACT
* ** *
119280 GAAGGTCTTATGGATTGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGATGGCTCGGA
66 GAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCGGA
* ** *
119345 GAACTTACAAATCAAGAAACCCTTGAAGGCTTAGTTTGTAAAATCTCATTTGAAAACAT-ACTGC
131 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCA-TGC
* * * *
119409 ACTGAAGGTCTTATGGATGGCCCGAACGACTTACACATTATGCTCGAAAGACTTATTGATGGCCC
195 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
119474 AGAGG
260 AGAGG
* *
119479 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAATTATCATTTGAAAACATCCTGCACT
1 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACT
*
119544 GAAGGTCTTATGGATTGCCC-AGAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCGG
66 GAAGGTCTTATGGATGGCCCGA-AGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCGG
*
119608 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTTGTTTCTAAAATCTCATTTGAAAACATCATGC
130 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGC
* *
119673 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTATGCATCATGCTCCAAAGACTTACTGATGGCCC
195 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
* **
119738 AAAAC
260 AGAGG
* * *
119743 ACTTACAAATCAAGAAACCCCCGAAGGATTAGTTTCTAAAATCTCATTTTAAAGCATCCTGCACT
1 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACT
* *
119808 GAAGGTCTTATGGATGGCCCGAAGGTCTTACCCATCATGCTCGAAAGACTTACTGATGGCCCGGA
66 GAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCGGA
* * * * *
119873 GGACTAAAAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAAAATATCCTGCA
131 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGCA
* * ** * * *
119938 CGGAAGGTCTTATGGATGGTCCGAAGGACTTACAAATCAAGAAACCCCCGAATG-CTTA--G-T-
196 CTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATG-----CTCGAAAGACTTACTGATG
** *
119998 TTCTA-A--
256 GCCCAGAGG
* * * * * ** *** *** **
120004 AATCT-CATATGAA-AACATCATGCGCTGAAGGTCTTATGGATGGCCCGAAGGACA--T--ACGC
1 ACT-TACAAATCAAGAA-A-C---CCCCGAAGG-CTTA--G-TTTCTAAAATCTCATTTGAAAAC
* * * * * * ** * * *
120063 ATCATGCTC-GAAAGACTTACTGG-TGGCCTGGAGGACTTACAAATCAAGAAACCCCCG-AAGGC
56 ATCCTGCACTGAAGGTCTTA-TGGATGGCCCGAAGGACTTACGCATCATG-----CTCGAAAGAC
** **** * * ** * ***** * * * ****
120125 TTA--G-TTTCTAAAATGTATTTTGAAAAC-ATCCTGCACTGAAGGTCTTATGGATGTCCCGGA-
115 TTACTGATGGCCCGGA-GGACTTACAAATCAAGAAACCCCCGAAGG-CTTA--G-TTTCTAAAAT
** * ** * * * *
120185 -GGACTT--ACGCATCATGCTC-GAAAGACTTACT-GATGGCCCGGTCCCGGAGGACTTACGCAT
175 CTCATTTGAAAACATCATGCACTGAAGGTCTTA-TGGAT-----GG-CCCGAAGGACTTACGCAT
*
120245 CATGCTCGAAAGACTTACTGATGGCCCGGAGG
233 CATGCTCGAAAGACTTACTGATGGCCCAGAGG
*
120277 ACTTACAAATCAAGAAACCCTCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACT
1 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACT
* *
120342 GAAGGTCTTATGGATGGCCCGAAGGTCTTACCCATCATGCTCGAAAGACTTACTGATGGCCCGGA
66 GAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCGGA
* *
120407 GGACTTACAAATCAAGAAACCCCCGAAGACTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCA
131 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGCA
* * * * * *
120472 CTGAAGCTCTTATGGATGGTCCGGAGGACTTACACATTATGCTCGAAAGACTTACTGATGGCCCG
196 CTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCA
120537 GAGG
261 GAGG
*
120541 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATTCTGCACT
1 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACT
* * *
120606 GAAGTTCTTATGGATGGCCCGAAGGACTTATGCATCATGCTCGAAAGACTTACTGATGGCCCAGA
66 GAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCGGA
* *
120671 GGACTTACAAATCAAGAAATCTCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGCA
131 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGCA
** * *
120736 CTGAAGGTCTTATGGATGATCCGGAGGACTTACGCATCATACTCGAAAGACTTACTGATGGCCCA
196 CTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCA
120801 GAGG
261 GAGG
*
120805 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAGCATCCTGCACT
1 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACT
* * * * * *
120870 GAAGGTCTTATGGATGGCTCGAAGGTCTTACGCATCATGCTCGAAACACTTACTAAGGGCCCAGA
66 GAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCGGA
* *
120935 GGACTTACAAATCAA-AATACCCTCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
131 GGACTTACAAATCAAGAA-ACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGC
* * * *
120999 ACTAAAGCTCTTATGGATGGCCCGGAA-GACTTACGTATCATGATCGAAAGACTTACTGATGGCC
195 ACTGAAGGTCTTATGGATGGCCC-GAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCC
*
121063 CGGAGG
259 CAGAGG
121069 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACT
1 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACT
* *
121134 GAAGGTCTTATGGATGG--C------C---CG-A--A---T-G--AGACTTACTGATGGCCCAGT
66 GAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCGGA
* * * *
121179 GGACTTACAAATCAAGAAACCTCCGAAGGCTTAGTTTCTAAAATCTCATTTCAAAACATCCTGCT
131 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGCA
* * * *
121244 CTGATGGTCTTATGGATGGCCCGGAGGACTTATGCATCATGCTCAAAAGACTTACTGATGGCCC-
196 CTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCA
121308 GAAGG
261 G-AGG
*
121313 ACTTACAAATGAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAGA-ATCCTGCAC
1 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA-ACATCCTGCAC
* * * *
121377 TGAAGGTCTTATGGATGGCCTGAAGGTCTTACGTATCATGCTCGAAAGACTTACTGATGGCCCGA
65 TGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCGG
*
121442 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCTTGC
130 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGC
*
121507 ACTGAAGGTCTTATGGATGGCCCGATGGACTTAC
195 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
121541 AAATCTAGAA
Statistics
Matches: 1720, Mismatches: 253, Indels: 178
0.80 0.12 0.08
Matches are distributed among these distances:
243 3 0.00
244 209 0.12
245 3 0.00
246 1 0.00
247 1 0.00
250 1 0.00
252 2 0.00
253 2 0.00
255 2 0.00
256 2 0.00
258 1 0.00
260 2 0.00
261 10 0.01
262 4 0.00
263 4 0.00
264 1211 0.70
265 66 0.04
266 29 0.02
267 8 0.00
268 31 0.02
269 59 0.03
270 55 0.03
271 1 0.00
272 2 0.00
273 9 0.01
274 2 0.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (264 bp):
ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACT
GAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCGGA
GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGCA
CTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCA
GAGG
Found at i:119947 original size:396 final size:395
Alignment explanation
Indices: 119215--121540 Score: 2522
Period size: 396 Copynumber: 5.9 Consensus size: 395
119205 GACCCGAATA
* * * *
119215 ACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTTCTTAATTCTCATTTGAAAATATCCTGCACT
1 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACT
* * * **
119280 GAAGGTCTTATGGATTGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGATGGCTC-GG
66 GAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGCCCAAA
** * *
119344 AGAACTTACAAATCAAGAAACCCTTGAAGGCTTAGTTTGTAAAATCTCATTTGAAAACATACTGC
131 AG-ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
* * * *
119409 ACTGAAGGTCTTATGGATGGCCCGAACGACTTACACATTATGCTCGAAAGACTTATTGATGGCCC
195 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
* * *
119474 AGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAATTATCATTTGAAAACATCCT
260 GGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
*
119539 GCACTGAAGGTCTTATGGATTGCCCAGAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGC
325 GCACTGAAGGTCTTATGGATGGCCC-GAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGC
*
119604 CCGGAGG
389 CCAGAGG
* *
119611 ACTTACAAATCAAGAAACCCCCGAAGGCTTTGTTTCTAAAATCTCATTTGAAAACATCATGCACT
1 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACT
** *
119676 GAAGGTCTTATGGATGGCCCGAAGGACTTATGCATCATGCTCCAAAGACTTACTGATGGCCCAAA
66 GAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGCCCAAA
* * * *
119741 ACACTTACAAATCAAGAAACCCCCGAAGGATTAGTTTCTAAAATCTCATTTTAAAGCATCCTGCA
131 AGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCA
* *
119806 CTGAAGGTCTTATGGATGGCCCGAAGGTCTTACCCATCATGCTCGAAAGACTTACTGATGGCCCG
196 CTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCG
* * * *
119871 GAGGACTAAAAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAAAATATCCTG
261 GAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTG
* * ** * * *
119936 CACGGAAGGTCTTATGGATGGTCCGAAGGACTTACAAATCAAGAAACCCCCGAATG-CTTA--G-
326 CACTGAAGGTCTTATGGATGGCCCG-AGGACTTACGCATCATG-----CTCGAAAGACTTACTGA
** *
119997 T-TTCTA-A--
385 TGGCCCAGAGG
* * * * * ** *** *** **
120004 AATCT-CATATGAA-AACATCATGCGCTGAAGGTCTTATGGATGGCCCGAAGGACA--T--ACGC
1 ACT-TACAAATCAAGAA-A-C---CCCCGAAGG-CTTA--G-TTTCTAAAATCTCATTTGAAAAC
* * * * * * * * * *
120063 ATCATGCTC-GAAAGACTTACTGG-TGGCCTGGAGGACTTACAAATCAAGAAACCCCCG-AAGGC
56 ATCCTGCACTGAAGGTCTTA-TGGATGGCCCGAAGGACTTACACATCATG-----CTCGAAAGAC
** * * ** * ***** * * * ****
120125 TTA--G-T-TTCTAAAATGTATTTTGAAAAC-ATCCTGCACTGAAGGTCTTATGGATGTCCCGGA
115 TTACTGATGGCCCAAAA-G-ACTTACAAATCAAGAAACCCCCGAAGG-CTTA--G-TTTCTAAAA
** * ** * * * * *
120185 --GGACTT--ACGCATCATGCTC-GAAAGACTTACT-GATGGCCCGGTCCCGGAGGACTTACGCA
174 TCTCATTTGAAAACATCCTGCACTGAAGGTCTTA-TGGAT-----GG-CCCGAAGGACTTACGCA
*
120244 TCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCTCGAAGGCTTAG
232 TCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAG
* *
120309 TTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGTCTTACC
297 TTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCG-AGGACTTACG
*
120374 CATCATGCTCGAAAGACTTACTGATGGCCCGGAGG
361 CATCATGCTCGAAAGACTTACTGATGGCCCAGAGG
*
120409 ACTTACAAATCAAGAAACCCCCGAAGACTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACT
1 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACT
* * * * **
120474 GAAGCTCTTATGGATGGTCCGGAGGACTTACACATTATGCTCGAAAGACTTACTGATGGCCCGGA
66 GAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGCCCAAA
* *
120539 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATTCTGCA
131 AGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCA
* * *
120604 CTGAAGTTCTTATGGATGGCCCGAAGGACTTATGCATCATGCTCGAAAGACTTACTGATGGCCCA
196 CTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCG
* * *
120669 GAGGACTTACAAATCAAGAAATCTCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATG
261 GAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTG
* * *
120734 CACTGAAGGTCTTATGGATGATCCGGAGGACTTACGCATCATACTCGAAAGACTTACTGATGGCC
326 CACTGAAGGTCTTATGGATG-GCCCGAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCC
120799 CAGAGG
390 CAGAGG
*
120805 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAGCATCCTGCACT
1 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACT
* * * * * * *
120870 GAAGGTCTTATGGATGGCTCGAAGGTCTTACGCATCATGCTCGAAACACTTACTAAGGGCCCAGA
66 GAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGCCCAAA
* *
120935 GGACTTACAAATCAA-AATACCCTCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
131 AGACTTACAAATCAAGAA-ACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
* * * *
120999 ACTAAAGCTCTTATGGATGGCCCGGAA-GACTTACGTATCATGATCGAAAGACTTACTGATGGCC
195 ACTGAAGGTCTTATGGATGGCCC-GAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCC
121063 CGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCC
259 CGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCC
121128 TGCACTGAAGGTCTTATGGATGG--C-----C---CG-A--A---T-G--AGACTTACTGATGGC
324 TGCACTGAAGGTCTTATGGATGGCCCGAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGC
*
121174 CCAGTGG
389 CCAGAGG
* * *
121181 ACTTACAAATCAAGAAACCTCCGAAGGCTTAGTTTCTAAAATCTCATTTCAAAACATCCTGCTCT
1 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACT
* * ** * *
121246 GATGGTCTTATGGATGGCCCGGAGGACTTATGCATCATGCTCAAAAGACTTACTGATGGCCCGAA
66 GAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGCCCAAA
* *
121311 GGACTTACAAATGAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAGA-ATCCTGC
131 AGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA-ACATCCTGC
* * *
121375 ACTGAAGGTCTTATGGATGGCCTGAAGGTCTTACGTATCATGCTCGAAAGACTTACTGATGGCCC
195 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
* *
121440 GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCTT
260 GGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
121505 GCACTGAAGGTCTTATGGATGGCCCGATGGACTTAC
325 GCACTGAAGGTCTTATGGATGGCCCGA-GGACTTAC
121541 AAATCTAGAA
Statistics
Matches: 1603, Mismatches: 246, Indels: 171
0.79 0.12 0.08
Matches are distributed among these distances:
375 3 0.00
376 334 0.21
377 3 0.00
378 2 0.00
379 1 0.00
382 1 0.00
384 2 0.00
385 2 0.00
387 1 0.00
388 1 0.00
392 2 0.00
393 9 0.01
394 2 0.00
395 4 0.00
396 849 0.53
397 69 0.04
398 28 0.02
399 8 0.00
400 30 0.02
401 58 0.04
402 180 0.11
403 1 0.00
404 2 0.00
405 9 0.01
406 2 0.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (395 bp):
ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACT
GAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGCCCAAA
AGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCA
CTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCG
GAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTG
CACTGAAGGTCTTATGGATGGCCCGAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
AGAGG
Found at i:120017 original size:90 final size:90
Alignment explanation
Indices: 119862--120056 Score: 291
Period size: 90 Copynumber: 2.2 Consensus size: 90
119852 AAGACTTACT
* *
119862 GATGGCCCGGAGGACTAAAAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAA
1 GATGGCCCGAAGGACTAAAAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATATGAA
* *
119927 AATATCCTGCACGGAAGGTCTTATG
66 AACATCATGCACGGAAGGTCTTATG
* * * * *
119952 GATGGTCCGAAGGACTTACAAATCAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATATGAA
1 GATGGCCCGAAGGACTAAAAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATATGAA
* *
120017 AACATCATGCGCTGAAGGTCTTATG
66 AACATCATGCACGGAAGGTCTTATG
120042 GATGGCCCGAAGGAC
1 GATGGCCCGAAGGAC
120057 ATACGCATCA
Statistics
Matches: 93, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
90 93 1.00
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (90 bp):
GATGGCCCGAAGGACTAAAAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATATGAA
AACATCATGCACGGAAGGTCTTATG
Found at i:120040 original size:222 final size:222
Alignment explanation
Indices: 119743--120192 Score: 706
Period size: 222 Copynumber: 2.0 Consensus size: 222
119733 GGCCCAAAAC
* * * *
119743 ACTTACAAATCAAGAAACCCCCGAAGGATTAGTTTCTAAAATCTCATTTTAAAGCATCCTGCACT
1 ACTTACAAATCAAGAAACCCCCGAAGGATTAGTTTCTAAAATCTCATATGAAAACATCATGCACT
* *
119808 GAAGGTCTTATGGATGGCCCGAAGGTCTTACCCATCATGCTCGAAAGACTTACTGATGGCCCGGA
66 GAAGGTCTTATGGATGGCCCGAAGGACATACCCATCATGCTCGAAAGACTTACTGATGGCCCGGA
*
119873 GGACTAAAAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCA-TTTGAAAATATCCTGC
131 GGACTAAAAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATAT-ATTTTGAAAACATCCTGC
119937 ACGGAAGGTCTTATGGATGGT-CCGAAGG
195 ACGGAAGGTCTTATGGAT-GTCCCGAAGG
* * *
119965 ACTTACAAATCAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATATGAAAACATCATGCGCT
1 ACTTACAAATCAAGAAACCCCCGAAGGATTAGTTTCTAAAATCTCATATGAAAACATCATGCACT
* * *
120030 GAAGGTCTTATGGATGGCCCGAAGGACATACGCATCATGCTCGAAAGACTTACTGGTGGCCTGGA
66 GAAGGTCTTATGGATGGCCCGAAGGACATACCCATCATGCTCGAAAGACTTACTGATGGCCCGGA
* * *
120095 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATGTATTTTGAAAACATCCTGCA
131 GGACTAAAAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATATTTTGAAAACATCCTGCA
* *
120160 CTGAAGGTCTTATGGATGTCCCGGAGG
196 CGGAAGGTCTTATGGATGTCCCGAAGG
120187 ACTTAC
1 ACTTAC
120193 GCATCATGCT
Statistics
Matches: 208, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
221 3 0.01
222 205 0.99
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.25
Consensus pattern (222 bp):
ACTTACAAATCAAGAAACCCCCGAAGGATTAGTTTCTAAAATCTCATATGAAAACATCATGCACT
GAAGGTCTTATGGATGGCCCGAAGGACATACCCATCATGCTCGAAAGACTTACTGATGGCCCGGA
GGACTAAAAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATATTTTGAAAACATCCTGCA
CGGAAGGTCTTATGGATGTCCCGAAGG
Found at i:120248 original size:48 final size:48
Alignment explanation
Indices: 120177--120273 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
120167 TCTTATGGAT
120177 GTCCCGGAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCG
1 GTCCCGGAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCG
120225 GTCCCGGAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCG
1 GTCCCGGAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCG
120273 G
1 G
120274 AGGACTTACA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (48 bp):
GTCCCGGAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCG
Found at i:120380 original size:180 final size:180
Alignment explanation
Indices: 120047--120405 Score: 612
Period size: 180 Copynumber: 2.0 Consensus size: 180
120037 TTATGGATGG
* *
120047 CCCGAAGGACATACGCATCATGCTCGAAAGACTTACTGGTGGCCTGGAGGACTTACAAATCAAGA
1 CCCGAAGGACATACGCATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGA
*
120112 AACCCCCGAAGGCTTAGTTTCTAAAATGTATTTTGAAAACATCCTGCACTGAAGGTCTTATGGAT
66 AACCCCCGAAGGCTTAGTTTCTAAAATCTATTTTGAAAACATCCTGCACTGAAGGTCTTATGGAT
* * *
120177 GTCCCGGAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCGGT
131 GGCCCGAAGGACTTACCCATCATGCTCGAAAGACTTACTGATGGCCCGGT
* *
120227 CCCGGAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGA
1 CCCGAAGGACATACGCATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGA
*
120292 AACCCTCGAAGGCTTAGTTTCTAAAATCTCA-TTTGAAAACATCCTGCACTGAAGGTCTTATGGA
66 AACCCCCGAAGGCTTAGTTTCTAAAATCT-ATTTTGAAAACATCCTGCACTGAAGGTCTTATGGA
*
120356 TGGCCCGAAGGTCTTACCCATCATGCTCGAAAGACTTACTGATGGCCCGG
130 TGGCCCGAAGGACTTACCCATCATGCTCGAAAGACTTACTGATGGCCCGG
120406 AGGACTTACA
Statistics
Matches: 168, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
180 167 0.99
181 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.24
Consensus pattern (180 bp):
CCCGAAGGACATACGCATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGA
AACCCCCGAAGGCTTAGTTTCTAAAATCTATTTTGAAAACATCCTGCACTGAAGGTCTTATGGAT
GGCCCGAAGGACTTACCCATCATGCTCGAAAGACTTACTGATGGCCCGGT
Found at i:121253 original size:112 final size:112
Alignment explanation
Indices: 121047--121266 Score: 386
Period size: 112 Copynumber: 2.0 Consensus size: 112
121037 CATGATCGAA
*
121047 AGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATC
1 AGACTTACTGATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATC
*
121112 TCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAATG
66 TCATTTCAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAATG
* *
121159 AGACTTACTGATGGCCCAGTGGACTTACAAATCAAGAAACCTCCGAAGGCTTAGTTTCTAAAATC
1 AGACTTACTGATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATC
* *
121224 TCATTTCAAAACATCCTGCTCTGATGGTCTTATGGATGGCCCG
66 TCATTTCAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCG
121267 GAGGACTTAT
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
112 102 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (112 bp):
AGACTTACTGATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATC
TCATTTCAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAATG
Found at i:121385 original size:132 final size:132
Alignment explanation
Indices: 121159--121540 Score: 599
Period size: 132 Copynumber: 2.9 Consensus size: 132
121149 GGCCCGAATG
* *
121159 AGACTTACTGATGGCCC-AGTGGACTTACAAATCAAGAAACCTCCGAAGGCTTAGTTTCTAAAAT
1 AGACTTACTGATGGCCCGA-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAAT
* * * *
121223 CTCATTTCAAAACATCCTGCTCTGATGGTCTTATGGATGGCCCGGAGGACTTATGCATCATGCTC
65 CTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTC
121288 AAA
130 AAA
*
121291 AGACTTACTGATGGCCCGAAGGACTTACAAATGAAGAAACCCCCGAAGGCTTAGTTTCTAAAATC
1 AGACTTACTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATC
* * * *
121356 TCATTTGAAAGA-ATCCTGCACTGAAGGTCTTATGGATGGCCTGAAGGTCTTACGTATCATGCTC
66 TCATTTGAAA-ACATCCTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTC
*
121420 GAA
130 AAA
121423 AGACTTACTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATC
1 AGACTTACTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATC
*
121488 TCATTTGAAAACATCTTGCACTGAAGGTCTTATGGATGGCCC-GATGGACTTAC
66 TCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGGA-GGACTTAC
121541 AAATCTAGAA
Statistics
Matches: 229, Mismatches: 17, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
131 2 0.01
132 225 0.98
133 2 0.01
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.26
Consensus pattern (132 bp):
AGACTTACTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATC
TCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCA
AA
Found at i:121585 original size:90 final size:90
Alignment explanation
Indices: 121432--123778 Score: 3033
Period size: 90 Copynumber: 26.2 Consensus size: 90
121422 AAGACTTACT
*
121432 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
121497 AACATCTTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * * * *
121522 GATGGCCCGATGGACTTACAAATCTAGAAACCCACGAAGGATTAGTTTATTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
121587 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * * *
121612 GATGGCCCGATGGACTTACAAATCAAGAAACCCTCGAAGGCTTAGTTTCTTAAAATTTTATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
121677 AAACATCCTGCACTGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
*
121703 GA-AGCCCGAA-GACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
**
121765 AACATCCTGCACTGAAAATCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
121790 GATGG-CCGAAGGACTTAC-AATC-AG-AACCCCCGAAGGCTTAGTTTCTAAAAT-TCATCTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
121850 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
121875 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
121940 AACATCTTGCAGTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
** * *
121965 GATGGCTTGAAGGACTTACAAGTCAAGAAACCCCCGAAGGCTTAGTTTCTTAATTCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
122030 AATATCCTGCACTGAAGGTCTTATA
66 AACATCCTGCACTGAAGGTCTTATG
* * * * *
122055 GATGGCTCGAAGGGCTTACAAATCAAAAAACCCCTGAAGGCTTAGTTTTTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
122120 AATATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
122145 GATGGCTCGAAGAACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
122210 AACATCATGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * *
122235 GATGGGCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTTATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
*
122300 AAACATCCTGCACTGAAGGTCTTATA
65 AAACATCCTGCACTGAAGGTCTTATG
*
122326 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
122391 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* ** ** * * *** *** *
122416 GATGGGCCCG--GG-CTTACGCATCATGCTCGAAAACTTACTGATGGCCCGGAGACTTACAA-AT
1 GAT-GGCCCGAAGGACTTA--CA-AAT-CAAG-AAAC-CCCCGAAGGCTTAGTTTCTTA-AATCT
*
122477 CA--AG-AAAC--CC--C-C-GAAGG-CTTA--
58 CATTTGAAAACATCCTGCACTGAAGGTCTTATG
** * * ** * * * * * *** *
122498 G-T--TTCTAA--AATCT-CATTTGAAAGTATCCTGCACTGAAGGTCTT-GTGGATGGCCCGAAG
1 GATGGCCCGAAGGACT-TACAAAT-CAAGAAACC--C-CCGAAGG-CTTAGT---T-TCTTAAAT
* * * * * * *
122556 GTC--TT--ACACATCATGCTC-GAAAGACTAACT-
56 CTCATTTGAAAACATCCTGCACTGAAGGTCTTA-TG
* * * * *
122586 GATGGACCGGAGGACTTGCAAATCAAGAAACCCCCGAAGGCTTAGTTTATAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
122651 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
122676 GATGGCCCGAAGGACTTACAATTCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
122741 AACATCTTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * * * *
122766 GATTGCCCAAAGGACTTACAAATCTAGAAACCCACGAAGGATTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
122831 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * * *
122856 GATGGCCCGATGGACTTACAAATCAAGAAACCCTCGAAGGCTTAGTTTCTTAAAATTTTATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
122921 AAACATCCTGCACTGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* * *
122947 GATGGCCCGAAGGACGTACAAATCAAGAAACCCCGGAAGACTTAGTTTTCTTAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAG-TTTCTTAAATCTCATTTGA
*
123012 AAACATCCTGCACTGAAAGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* *
123038 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGACGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
123103 AAACATCCTGCACTGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
*
123129 GATGGCCCGAAGGACTTACGAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
123194 AACATCTTGCAGTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
** * * *
123219 GATGGCTTGAAGGACTTACAAGTCAAGAAACCCCTGAAGGCTTAGTTTCTTAATTCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
123284 AATATCCTGCACTGAAGGTCTTATA
66 AACATCCTGCACTGAAGGTCTTATG
* * * * * *
123309 GATGGCTCGAAGGGCTTAGAAATCAAAAAACCCCTGAAGGCTTAGTTTTTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
123374 AATATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * *
123399 GATGGCTCAAAGAACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
123464 AACATCATGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
123489 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
123554 AACATCCTGCACTGAAGGTCTCATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
123579 GATGGCCTGAAGGACTTACAAATCAAGAAATCCCCC-AAGGCTTAGTTTCTTAAAATTTCATTTG
1 GATGGCCCGAAGGACTTACAAATCAAGAAA-CCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTG
* * *
123643 AAAACGTCCTCCACTGAAAGTCTTATG
64 AAAACATCCTGCACTGAAGGTCTTATG
* *
123670 GATGGCCCGAAGGACTTACAAATCAATAAACCCTCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
123735 AACATCCTGCATTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
123760 GATGGCCCGGAGGACTTAC
1 GATGGCCCGAAGGACTTAC
123779 GCATCATGCT
Statistics
Matches: 1978, Mismatches: 220, Indels: 118
0.85 0.09 0.05
Matches are distributed among these distances:
75 2 0.00
76 3 0.00
77 9 0.00
78 2 0.00
79 1 0.00
80 6 0.00
81 4 0.00
82 2 0.00
84 5 0.00
85 71 0.04
86 24 0.01
87 53 0.03
88 19 0.01
89 86 0.04
90 1192 0.60
91 459 0.23
92 16 0.01
93 9 0.00
94 13 0.01
95 2 0.00
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.27
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Done.