Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006189.1 Hibiscus syriacus cultivar Beakdansim tig00014728_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 980383
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
File 2 of 7
Found at i:122647 original size:132 final size:130
Alignment explanation
Indices: 122326--122695 Score: 602
Period size: 132 Copynumber: 2.8 Consensus size: 130
122316 AGGTCTTATA
*
122326 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
122391 AACATCCTGCACTGAAGGTCTTATGGATGGGCCCG--GGCTTACGCATCATGCTCGAAAACTTAC
66 AACATCCTGCACTGAAGGTCTTATGGAT-GGCCCGAAGGCTTACACATCATGCTCGAAAACTAAC
122454 T
130 T
122455 GATGGCCCGGA-GACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
** *
122519 AGTATCCTGCACTGAAGGTCTTGTGGATGGCCCGAAGGTCTTACACATCATGCTCGAAAGACTAA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGG-CTTACACATCATGCTCGAAA-ACTAA
122584 CT
129 CT
* * *
122586 GATGGACCGGAGGACTTGCAAATCAAGAAACCCCCGAAGGCTTAGTTTATAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
122651 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGG-CTTACA
122696 ATTCAAGAAA
Statistics
Matches: 223, Mismatches: 13, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
127 6 0.03
128 78 0.35
129 12 0.05
130 19 0.09
131 16 0.07
132 92 0.41
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.24
Consensus pattern (130 bp):
GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGCTTACACATCATGCTCGAAAACTAACT
Found at i:123932 original size:103 final size:103
Alignment explanation
Indices: 123753--123954 Score: 350
Period size: 103 Copynumber: 2.0 Consensus size: 103
123743 GCATTGAAGG
*
123753 TCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACA
1 TCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACA
*
123818 TACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAATA
66 TACAAATCAAGAAACCCACGAAGGCTTAGTTTCTAATA
* * *
123856 TCTTATGGATGGCCTGAAGGTCTTACGCATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACT
1 TCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACA
*
123921 TATAAATCAAGAAACCCACGAAGGCTTAGTTTCT
66 TACAAATCAAGAAACCCACGAAGGCTTAGTTTCT
123955 TAAATCTCAT
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
103 93 1.00
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.24
Consensus pattern (103 bp):
TCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACA
TACAAATCAAGAAACCCACGAAGGCTTAGTTTCTAATA
Found at i:124067 original size:90 final size:90
Alignment explanation
Indices: 123905--127268 Score: 2675
Period size: 90 Copynumber: 37.3 Consensus size: 90
123895 AAGACTTACT
* * *
123905 GATGGCCCGGAGGACTTATAAATCAAGAAACCCACGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
123970 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
123995 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTAATTT-A
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
*
124059 AAAAATCCTGCACTGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* *
124085 GATGGCCCGAAGGACTTACAAATCAAGAAACCCTCGAAGACTTAGTTTTCTTAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAG-TTTCTTAAATCTCATTTGA
* *
124150 AAACTTCCTGCACTGAAAGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
*
124176 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* *
124241 AAACATCCTGCACTAAAGGTTTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
*
124267 GATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
124332 AACATCTTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * * * *
124357 GATGGCCAGAAGGACTTACAAGTCAAGAAACCTCTGAAGGCTTAGTTTCTTAAATCGCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
124422 AATATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * * * *
124447 GATGGCTCGAAGGGCCTACAAATCAAGAAACCCCTGAAGGCTTAGTTTTTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
124512 AACATCCTACACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * *
124537 GATGG-CCGAAGAACTTACAAAACAAGAAACCCCCGATGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
124601 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
124626 GATGGCCCGAAGGACTTACAAATCAAGATACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
*
124691 AAACATCCTGCACTGAAGGTCTTATA
65 AAACATCCTGCACTGAAGGTCTTATG
*
124717 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
124782 AACATCCTGTACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * * ** ** * * ** **
124807 GATGTCCCGGAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCGGAG-GACTTACAAA
1 GATGGCCCGAAGGACTTA--CA-AAT-CAAG-AA-AC-CCCCGAAGG--CTTAGTTTCTT--AAA
124871 TC-CA---G-AAAC--CC--C-C-GAAGG-CTTA--
55 TCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
** * * ** * * * * * * ** *** **
124893 G-T--TTCTAA--AATCT-CATTTGAAAGCATCCTGTACTGAAGGTCTTTTGGATGGCCCGAAGG
1 GATGGCCCGAAGGACT-TACAAAT-CAAGAAACC---CCCGAAGG-C--TTAG-TTTCTTAAATC
** * * * *
124952 TC--TT--ACGCATCATGCTC-GAA-GACTAACT-
57 TCATTTGAAAACATCCTGCACTGAAGGTCTTA-TG
* *
124980 GATGGCTCGGAGGACTTACAAATCAAGAAACCCCCGAAAGG-TTAGTTT-TTAAAATCTCATTTG
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCG-AAGGCTTAGTTTCTT-AAATCTCATTTG
*
125043 AAAACATCATGCACTGAAGGTCTTATG
64 AAAACATCCTGCACTGAAGGTCTTATG
** * * *
125070 GATATCCCGAAGGACTTACAAATCAAGAAACCCCCGACGTCTTAGTTTCTTAAATATCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
125135 AACATCCTGTACTGAAGGTCTTACG
66 AACATCCTGCACTGAAGGTCTTATG
* * * *
125160 GATGGCCCGAATGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTTTAAAATTTCATTGGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
125225 AAACATCCTGCACTGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
125251 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
125316 AACATCCTGCACTGAAAGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * * * * *
125341 GATGACCTGAAGGTCTTACAAATCAAGAAACCACCGAAGGCTTAGTTTCTTAAAATTTCATTTTA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
*
125406 AAACATCATGCACTGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* * * *
125432 GATTGCCCGAAGGACTTACAAATCAAGGAACCCCCGAAGGATTAGTTTCTTAAATCTCTTTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
125497 AACATCCTGCACAGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * *
125522 GATGGCTCGAAGGACTTACAAATAAAGAAA-CCTCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * *
125586 AATATCTTGTACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
125611 GATGGCCCGAAGGACTTACAAATCAAGAAAGCCCCGAAGGCTTAGTTTTTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
125676 AATATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
125701 GATGGCCCGAAGGACTTATAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
125766 AACATCCTGCACTTAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * ** *
125791 GATGGCCCGAAGGACTTACAAATGAAGAAACCCCTGAAATCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* * *
125856 AAATATCCTGCACGGAAGGTGTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* * *
125882 GATGACCC-AAGGACTTACATATTAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
125946 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * ** * * ** **
125971 GATTGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGATGGCCCGGAG-GACTTACAA-
1 GATGGCCCGAAGGACTTACAAATCA----AG-AA-AC-CCCCGAAGG--CTTAGTTTCTTA-AAT
* * * * * * *
126034 ATCA--AG-AAAC-CCCTGGAGGCT-TA-GT-TTCTAA
56 CTCATTTGAAAACATCCTGCA--CTGAAGGTCTTAT-G
* ** ** * * * * *** *
126065 AATCTCATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCAT
1 GATGGC--CCGAAGGAC-T--T--AC--AA-ATC--AAGAAACCCCCGAAGG-CTT--A-GT--T
* * * * *** * * * *
126129 GCTCGAAAGACTTA-TTGATGGC--CCAGAGGACTTGCAA-ATC--AAG
48 TCT-TAAA-TCTCATTTGAAAACATCC--TGCAC-TG-AAGGTCTTATG
* *** * * * ** ** ** * *
126172 AAACACCCGAA-GACTAAGTTTCTAAAATCTCATTTGAAAACATCTTACACTGAAG-GTCTTATG
1 GATGGCCCGAAGGAC----TTAC--AAA--TCA--AGAAACCCCCGAAGGCT-TAGTTTCTTA--
* * **** ** * * * * *
126235 GATGACCCGGAGGACTTACGCATCATGCTC-GAAAGACTTATT
53 AAT--CTCATTTGA---AAACATCCTGCACTGAAGGTCTTATG
* *
126277 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
**
126342 AACATTATGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * * ** **
126367 GATGGCCCGAAGGACTTACACATCATG-----CTCGAAAGGCTTACTGATGGCCCGAAGGA-CTT
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCG-AAGGCTTA--G-T-TTCTTAA--ATC-T
** *
126426 ACAAATCAAGAA-A-CCT-C-C-GAAGG-CTTA--
58 -CATTTGAA-AACATCCTGCACTGAAGGTCTTATG
** * * * * * ** ***
126453 G-T--TTCTAA--AATCT-C-ATTCGAAAGAATCCTACACTGAAGGTCTTATGGATGGCCCGAA-
1 GATGGCCCGAAGGACT-TACAAATC--AAGAAACC--C-CCGAAGG-CTTA--G-TTTCTTAAAT
** * ** * * * *
126510 -GGACTT--ACCCATCATGCTC-GAAAGACTTACT-
56 CTCATTTGAAAACATCCTGCACTGAAGGTCTTA-TG
126541 GATGGCCC-AGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGA
1 GATGGCCCGA-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGA
*
126605 AAACATCCTGCACTGAAAGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* * * * * *
126631 GATGACCTGAAGGTCTTACAAATCAAGAAACCACCGAAGGCTTAGTTTCTTAAAATTTCATTTTA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
*
126696 AAACATCATGCACTGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* * *
126722 GATTGCCCGAAGGACTTACAAATCAAGAAA-CCCCGAAGGATTAG-TTCTTAAATCTCTTTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
126785 AAC-TCCTGC-C-AAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * *
126807 GAT-GCTCGAAGGACTTACAAATAAAGAAA-CCTCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
126870 AATC-TCTTGTACTGAAGGTCTT-T-
66 AA-CATCCTGCACTGAAGGTCTTATG
*
126893 GATGGCCCGAAGGACTTACAAATCAA-AAA-CCCCGAAGGATTAGTTT-TTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
126955 AATATCCTGC-CTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
126979 GATGGCCCGAAGGACTTATAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
127044 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * ** *
127069 GATGGCCCGAAGGACTTACAAATGAAGAAACCCCTGAAATCTTAGTTTCTTAAATTTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * *
127134 AATATCCTGCACAGGAAGGT-GTGTG
66 AACATCCTGCAC-TGAAGGTCTTATG
* * * *
127159 GAT-ACCCGAAGGACTTACATATTAAGAAA-CCCCGAAGGCTTAGTTTTTTAAATCTCATTTG-A
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
127221 AACATCCTGC-CTGAAGGTC-TATG
66 AACATCCTGCACTGAAGGTCTTATG
*
127244 GATTGCCCGAAAGGAC-TACAAATCA
1 GATGGCCCG-AAGGACTTACAAATCA
127269 TGCTCGAAAG
Statistics
Matches: 2632, Mismatches: 457, Indels: 374
0.76 0.13 0.11
Matches are distributed among these distances:
76 1 0.00
77 2 0.00
78 10 0.00
79 5 0.00
80 5 0.00
81 7 0.00
82 7 0.00
83 7 0.00
84 57 0.02
85 93 0.04
86 81 0.03
87 51 0.02
88 92 0.03
89 310 0.12
90 1137 0.43
91 537 0.20
92 22 0.01
93 16 0.01
94 20 0.01
95 17 0.01
96 25 0.01
97 11 0.00
98 19 0.01
99 13 0.00
100 12 0.00
101 2 0.00
102 9 0.00
103 10 0.00
104 7 0.00
105 26 0.01
106 8 0.00
107 7 0.00
108 4 0.00
109 2 0.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:124785 original size:181 final size:180
Alignment explanation
Indices: 123905--124825 Score: 1450
Period size: 181 Copynumber: 5.1 Consensus size: 180
123895 AAGACTTACT
* * *
123905 GATGGCCCGGAGGACTTATAAATCAAGAAACCCACGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
123970 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
* * *
124035 CTTAGTTTCTTAAAATTTAATTT-AAAAAATCCTGCACTGAAGGTCTTATG
131 CTTAGTTTC-TAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
* *
124085 GATGGCCCGAAGGACTTACAAATCAAGAAACCCTCGAAGACTTAGTTTTCTTAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAG-TTTCTTAAATCTCATTTGA
* *
124150 AAACTTCCTGCACTGAAAGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* * *
124215 GCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACTAAAGGTTTTATG
130 GCTTAGTTTC-TAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
*
124267 GATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * * *
124332 AACATCTTGCACTGAAGGTCTTATGGATGGCCAGAAGGACTTACAAGTCAAGAAACCTCTGAAGG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
* * *
124397 CTTAGTTTCTTAAATCGCATTTGAAAATATCCTGCACTGAAGGTCTTATG
131 CTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
* * * * *
124447 GATGGCTCGAAGGGCCTACAAATCAAGAAACCCCTGAAGGCTTAGTTTTTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * *
124512 AACATCCTACACTGAAGGTCTTATGGATGG-CCGAAGAACTTACAAAACAAGAAACCCCCGATGG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
*
124576 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
131 CTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
* *
124626 GATGGCCCGAAGGACTTACAAATCAAGATACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
*
124691 AAACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
*
124756 GCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGTACTGAAGGTCTTATG
130 GCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
* *
124807 GATGTCCCGGAGGACTTAC
1 GATGGCCCGAAGGACTTAC
124826 GCATCATGCT
Statistics
Matches: 678, Mismatches: 59, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
179 120 0.18
180 204 0.30
181 288 0.42
182 66 0.10
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (180 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
CTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
Found at i:125059 original size:131 final size:132
Alignment explanation
Indices: 124717--125088 Score: 604
Period size: 132 Copynumber: 2.8 Consensus size: 132
124707 AGGTCTTATA
*
124717 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
124782 AACATCCTGTACTGAAGGTCTTATGGATGTCCCGGAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGTACTGAAGGTCTTATGGATGTCCCGAAGGACTTACGCATCATGCTCGAAAGACTAA
124847 CT
131 CT
*
124849 GATGGCCCGGAGGACTTACAAATCCAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
124914 AGCATCCTGTACTGAAGGTCTTTTGGATGGCCCGAAGGTCTTACGCATCATGCTCG-AAGACTAA
66 AACATCCTGTACTGAAGGTCTTATGGATGTCCCGAAGGACTTACGCATCATGCTCGAAAGACTAA
124978 CT
131 CT
* *
124980 GATGGCTCGGAGGACTTACAAATCAAGAAACCCCCGAAAGG-TTAGTTTTTAAAATCTCATTTGA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCG-AAGGCTTAGTTTCTAAAATCTCATTTGA
* * *
125044 AAACATCATGCACTGAAGGTCTTATGGATATCCCGAAGGACTTAC
65 AAACATCCTGTACTGAAGGTCTTATGGATGTCCCGAAGGACTTAC
125089 AAATCAAGAA
Statistics
Matches: 221, Mismatches: 18, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
131 103 0.47
132 118 0.53
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (132 bp):
GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGTACTGAAGGTCTTATGGATGTCCCGAAGGACTTACGCATCATGCTCGAAAGACTAA
CT
Found at i:125361 original size:181 final size:180
Alignment explanation
Indices: 124990--125995 Score: 1498
Period size: 181 Copynumber: 5.6 Consensus size: 180
124980 GATGGCTCGG
*
124990 AGGACTTACAAATCAAGAAACCCCCGAAAGG-TTAGTTT-TTAAAATCTCATTTGAAAACATCAT
1 AGGACTTACAAATCAAGAAACCCCCG-AAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCT
** * *
125053 GCACTGAAGGTCTTATGGATATCCCGAAGGACTTACAAATCAAGAAACCCCCGACGTCTTAGTTT
64 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTT
* * * *
125118 CTTAAATATCATTTGAAAACATCCTGTACTGAAGGTCTTACGGATGGCCCGA
129 CTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGACCCGA
* * * *
125170 ATGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTTTAAAATTTCATTGGAAAACATCCTG
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTG
125235 CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC
65 CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC
* *
125300 TTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCTGA
130 TTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGACCCGA
* * * * *
125351 AGGTCTTACAAATCAAGAAACCACCGAAGGCTTAGTTTCTTAAAATTTCATTTTAAAACATCATG
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTG
* * *
125416 CACTGAAGGTCTTATGGATTGCCCGAAGGACTTACAAATCAAGGAACCCCCGAAGGATTAGTTTC
65 CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC
* * * *
125481 TTAAATCTCTTTTGAAAACATCCTGCACAGAAGGTCTTATGGATGGCTCGA
130 TTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGACCCGA
* * * * *
125532 AGGACTTACAAATAAAGAAA-CCTCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAATATCTTGT
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
* *
125596 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAAGCCCCGAAGGCTTAGTTTTT
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCT
* *
125661 TAAATCTCATTTGAAAATATCCTGCACTGAAGGTCTTATGGATGGCCCGA
131 TAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGACCCGA
*
125711 AGGACTTATAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
* * * **
125776 ACTTAAGGTCTTATGGATGGCCCGAAGGACTTACAAATGAAGAAACCCCTGAAATCTTAGTTTCT
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCT
* * * *
125841 TAAAATTTCATTTGAAAATATCCTGCACGGAAGGTGTTATGGATGACCC-A
131 T-AAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGACCCGA
* *
125891 AGGACTTACATATTAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
*
125956 ACTGAAGGTCTTATGGATTGCCCGAAGGACTTACAAATCA
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
125996 TGCTCGAAAG
Statistics
Matches: 751, Mismatches: 71, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
179 147 0.20
180 249 0.33
181 355 0.47
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.28
Consensus pattern (180 bp):
AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCT
TAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGACCCGA
Found at i:126128 original size:132 final size:132
Alignment explanation
Indices: 125891--126655 Score: 1208
Period size: 132 Copynumber: 5.8 Consensus size: 132
125881 GGATGACCCA
* * *
125891 AGGACTTACATATTAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
* *
125956 ACTGAAGGTCTTATGGATTGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGCCC
126021 GG
131 GG
* *
126023 AGGACTTACAAATCAAGAAACCCCTGGAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
*
126088 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTATTGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGCCC
*
126153 AG
131 GG
* * * * * *
126155 AGGACTTGCAAATCAAGAAACACCCGAAGACTAAGTTTCTAAAATCTCATTTGAAAACATCTTAC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
* * * *
126220 ACTGAAGGTCTTATGGATGACCCGGAGGACTTACGCATCATGCTCGAAAGACTTATTGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGCCC
126285 GG
131 GG
**
126287 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATTATGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
*
126352 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGGCTTACTGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGCCC
*
126417 GA
131 GG
* * *
126419 AGGACTTACAAATCAAGAAACCTCCGAAGGCTTAGTTTCTAAAATCTCATTCGAAAGA-ATCCTA
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA-ACATCCTG
*
126483 CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACCCATCATGCTCGAAAGACTTACTGATGGCC
65 CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGCC
*
126548 CAG
130 CGG
*
126551 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
* * * * *
126616 ACTGAAAGTCTTATGGATGACCTGAAGGTCTTACAAATCA
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCA
126656 AGAAACCACC
Statistics
Matches: 578, Mismatches: 53, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
131 1 0.00
132 576 1.00
133 1 0.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.25
Consensus pattern (132 bp):
AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGCCC
GG
Found at i:126426 original size:20 final size:21
Alignment explanation
Indices: 126367--126428 Score: 58
Period size: 20 Copynumber: 3.0 Consensus size: 21
126357 AGGTCTTATG
126367 GATGGCCCGAAGGACTTACACAT
1 GATGGCCCGAAGGACTT--ACAT
* *
126390 CAT-GCTCGAAAGG-CTTAC-T
1 GATGGCCCG-AAGGACTTACAT
126409 GATGGCCCGAAGGACTTACA
1 GATGGCCCGAAGGACTTACA
126429 AATCAAGAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 10
0.69 0.09 0.22
Matches are distributed among these distances:
19 7 0.23
20 11 0.35
22 7 0.23
23 6 0.19
ACGTcount: A:0.29, C:0.26, G:0.26, T:0.19
Consensus pattern (21 bp):
GATGGCCCGAAGGACTTACAT
Found at i:126629 original size:396 final size:396
Alignment explanation
Indices: 125891--128313 Score: 1949
Period size: 396 Copynumber: 5.9 Consensus size: 396
125881 GGATGACCCA
* * * *
125891 AGGACTTACATATTAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGC
*
125956 ACTGAAGGTCTTATGGATTGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGATGGCCC
* * *
126021 GGAGGACTTACAAATCAAGAAACCCCTGGAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
131 GAAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAAAATCTCATTCGAAAACATCCT
* *
126086 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTATTGATGGC
196 ACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGC
*
126151 CCAGAGGACTTGCAAATCAAGAAACACCCGAAGACTAAGTTTCTAAAATCTCATTTGAAAACATC
261 CCAGAGGACTTACAAATCAAGAAACACCCGAAGACTAAGTTTCTAAAATCTCATTTGAAAACATC
* *
126216 TTACACTGAAGGTCTTATGGATGACCCGGAGGACTTACGCATCATGCTCGAAAGACTTATTGATG
326 CTACACTGAAAGTCTTATGGATGACCCGGAGGACTTACGCATCATGCTCGAAAGACTTATTGATG
126281 GCCCGG
391 GCCCGG
*
126287 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATTATGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGC
* *
126352 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGGCTTACTGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGATGGCCC
126417 GAAGGACTTACAAATCAAGAAACCTCC-GAAGGCTTAGTTTCTAAAATCTCATTCGAAAGA-ATC
131 GAAGGACTTACAAATCAAGAAACC-CCTGAAGGCTTAGTTTCTAAAATCTCATTCGAAA-ACATC
*
126480 CTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACCCATCATGCTCGAAAGACTTACTGATG
194 CTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATG
* * * *
126545 GCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACA
259 GCCCAGAGGACTTACAAATCAAGAAACACCCGAAGACTAAGTTTCTAAAATCTCATTTGAAAACA
* * * * ** * * *
126610 TCCTGCACTGAAAGTCTTATGGATGACCTGAAGGTCTTACAAATCAAGAAACCACCG-AAGGCTT
324 TCCTACACTGAAAGTCTTATGGATGACCCGGAGGACTTACGCATCATG----C-TCGAAAGACTT
**
126674 AGTT--T----CTT
384 A-TTGATGGCCCGG
* * * ** * * * * *** *** **
126682 A-AAATTTCATTTTAA-AACATCATGCACTGAAGGTCTTATGGATTGCCCGAAGGAC-TTACAAA
1 AGGACTTACAAATCAAGAA-A-C---CCCCGAAGG-CTTA--G-TTTCTAAAATCTCATTTGAAA
* ** ** * * * * *** *** * *
126744 TCAAGAAACCCCGAAGG-ATTA--G-T-TCTTAAATCTCTTTTGA-AAACTCCTGC-C-AAAGGT
57 ACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGAC--TT-ACAAA-TCATGCTCGAAA-GA
* * * *
126801 CTTA-TGGAT-GCTCGAAGGACTTACAAATAAAGAAACCTC-GAAGGCTTAGTTTCTTAAATCTC
117 CTTACT-GATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAAAATCTC
* * ** * ** *
126863 ATTTGAAAATC-TCTTGTACTGAAGGTCTT-T-GATGGCCCGAAGGACTTACAAATCAAAAACCC
181 ATTCGAAAA-CATCCTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATC---ATGCT
* * ** * * ***
126925 CGAAGGATTAGTTTTTAAATCTCATTTGAAAATATCCTGCCTGAAGGTCTTATGGATGGCCCGAA
242 CG-A--A--AG-------A-CTTA-CTG---AT-GGC--CCAG-AGGACTTACAAAT----C-AA
* * * *
126990 GGACTTATAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCA
281 -G------AAA-C-----A--CCCGAAGACTAAGTTTCTAAAATCTCATTTGAAAACATCCTACA
* * * ** * * *
127055 CTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATGAAGAAACCCCTGAAATCTTAGTTTCTT
331 CTGAAAGTCTTATGGATGACCCGGAGGACTTACGCATCATG----CTC-G-AA----AG------
* * *
127120 AAATTTCATTTGAAAATATCCTGCACAGG
380 --ACTT-A-TTG-----AT--GGC-CCGG
** ** ** * ** * *
127149 AAGGTGTGTGGATACCCGAAG-GACTTACATATTAAGAAACCCCGAAGGCTTAGTTTTTTAAATC
1 -AGGACT-TACA-AATC-AAGAAAC-CC--------------CCGAAGGCTTAGTTTCTAAAATC
* *
127213 TCATTTG-AAACATCCTGC-CTGAAGGTC-TATGGATTGCCCGAAAGGAC-TACAAATCATGCTC
47 TCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGGCCCG-AAGGACTTACAAATCATGCTC
*
127274 GAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCTG-AGGCTTAGTTTCTAAA
111 GAAAGACTTACTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAAA
* *
127338 ATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGC
176 ATCTCATTCGAAAACATCCTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGC
* *
127403 TCGAAAGACTTATTGATGGCCCAGAGGACTTGCAAATCAA-AAACA-CCGAAGACTAAGTTTCTA
241 TCGAAAGACTTACTGATGGCCCAGAGGACTTACAAATCAAGAAACACCCGAAGACTAAGTTTCTA
* * *
127466 AAATCTCATTTGAAAACATCTTACACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCAT
306 AAATCTCATTTGAAAACATCCTACACTGAAAGTCTTATGGATGACCCGGAGGACTTACGCATCAT
127531 GCTCGAAAGACTTA-TGATGGCCCGG
371 GCTCGAAAGACTTATTGATGGCCCGG
*
127556 -GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTCTAAAATCTCATTTGAAAACATTATG
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAG-TTTCTAAAATCTCATTTGAAAACATCATG
* *
127620 CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGGCTTACTGATGGCC
65 CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGATGGCC
127685 CGAAGGACTTACAAATCAAGAAACCTCC-GAAGGCTTAGTTTCTAAAATCTCATTCGAAAGA-AT
130 CGAAGGACTTACAAATCAAGAAACC-CCTGAAGGCTTAGTTTCTAAAATCTCATTCGAAA-ACAT
*
127748 CCTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACCCATCATGCTCGAAAGACTTACTGAT
193 CCTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGAT
* * * *
127813 GGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAA-TTTATAAAATCTCATTTGAAAG
258 GGCCCAGAGGACTTACAAATCAAGAAACACCCGAAGAC-TAAGTTTCTAAAATCTCATTTGAAAA
* ** ** ** * * *
127877 CATCCTGCACTGATGGTCTTATGGATGGTCCTAAGGTCTTACCCATCATGCTCGAAAGACTTACT
322 CATCCTACACTGAAAGTCTTATGGATGACCCGGAGGACTTACGCATCATGCTCGAAAGACTTATT
127942 GATGGCCCGG
387 GATGGCCCGG
* * *
127952 AGGACTAACAAATCAAGAAACCCCCGAAGACTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGC
* ** * *
128017 ACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCAAAAGACTTAATGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGATGGCCC
* * * *
128082 GGAGGACTTACAAATCAAGAAAACCCC-GAAGGGTTAGTTTCTAAAATTTCATTTGAAAGA-ATC
131 GAAGGACTTACAAATCAAG-AAACCCCTGAAGGCTTAGTTTCTAAAATCTCATTCGAAA-ACATC
* * * * **
128145 CTGCAATGAAGGTCTTATGGATGGCCAGAAGGTCTTACGTATCATGCTCGAAAGACTTACTGATG
194 CTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATG
* * * *
128210 GCCCAGAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACA
259 GCCCAGAGGACTTACAAATCAAGAAACACCCGAAGACTAAGTTTCTAAAATCTCATTTGAAAACA
* * * * *
128275 TCCTGCACTGAAGGTGTTATGGATGGCCCGAAGGACTTA
324 TCCTACACTGAAAGTCTTATGGATGACCCGGAGGACTTA
128314 AAAATCTAGA
Statistics
Matches: 1639, Mismatches: 237, Indels: 302
0.75 0.11 0.14
Matches are distributed among these distances:
388 12 0.01
389 16 0.01
390 9 0.01
391 15 0.01
392 68 0.04
393 118 0.07
394 36 0.02
395 89 0.05
396 693 0.42
397 75 0.05
398 22 0.01
399 11 0.01
400 12 0.01
401 20 0.01
402 11 0.01
403 4 0.00
404 2 0.00
405 3 0.00
407 3 0.00
408 2 0.00
409 1 0.00
410 5 0.00
411 2 0.00
414 2 0.00
415 3 0.00
417 4 0.00
418 12 0.01
422 1 0.00
423 2 0.00
424 1 0.00
426 2 0.00
430 5 0.00
431 2 0.00
432 2 0.00
436 74 0.05
437 2 0.00
438 86 0.05
439 1 0.00
440 1 0.00
444 3 0.00
445 3 0.00
452 2 0.00
453 5 0.00
454 1 0.00
458 8 0.00
459 3 0.00
460 1 0.00
461 1 0.00
462 2 0.00
465 3 0.00
466 3 0.00
467 1 0.00
468 2 0.00
469 1 0.00
470 3 0.00
471 1 0.00
472 2 0.00
474 2 0.00
476 1 0.00
477 8 0.00
478 17 0.01
479 22 0.01
480 76 0.05
481 7 0.00
482 32 0.02
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (396 bp):
AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGC
ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGATGGCCC
GAAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAAAATCTCATTCGAAAACATCCT
ACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGATGGC
CCAGAGGACTTACAAATCAAGAAACACCCGAAGACTAAGTTTCTAAAATCTCATTTGAAAACATC
CTACACTGAAAGTCTTATGGATGACCCGGAGGACTTACGCATCATGCTCGAAAGACTTATTGATG
GCCCGG
Found at i:127203 original size:352 final size:351
Alignment explanation
Indices: 123910--132002 Score: 2227
Period size: 360 Copynumber: 22.1 Consensus size: 351
123900 TTACTGATGG
* * *
123910 CCCGGAGGACTTATAAATCAAGAAACCCACGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACAT
1 CCCGAAGGACTTACAAATAAAGAAACCC-CGAAGGCTTAGTTTCTTAAATCTCATTTG-AAACAT
* *
123975 CCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAG
64 CCTG-ACTGAAGGTC-TATTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTAG
* * * * *
124040 TTTCTTAAAATTTAATTT-AAAAAATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
127 TTTCTT-AAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCGAAGGACTTAC
* * *
124104 AAATCAAGAAACC-CTCGAAGACTTAGTTTTCTT-AAATCTCATTTGAAAACTTCCTGCACTGAA
191 AAATCAAGAAACCAC-CGAAGGCTTAG-TTTCTTAAAATCTCATTTGAAAACATCATGCACTGAA
* * *
124167 AGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAAT
254 GGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAA-CCCCGAAAGATTAG-TTCTT-AAAT
* **
124232 TTCATTTGAAAACATCCTGCACTAAAGGTTTTATGGATGA
316 CTCATTTGAAAA-ATCCTGC-C-AAAGGTCGTATGGAT-A
*
124272 CCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACAT
1 CCCGAAGGACTTACAAATAAAGAAA-CCCCGAAGGCTTAGTTTCTTAAATCTCATTTG-AAACAT
* * * * * * *
124337 CTTGCACTGAAGGTCTTATGGATGGCCAGAAGGACTTACAAGTCAAGAAACCTCTGAAGGCTTAG
64 CCTG-ACTGAAGGTC-TATTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTAG
* * * * * * *
124402 TTTCTTAAATCGCATTTGAAAATATCCTGCACTGAAGGTCTTATGGATGGCTCGAAGGGCCTACA
127 TTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCGAAGGACTTACA
* * *
124467 AATCAAGAAACC-CCTGAAGGCTTAGTTT-TTTAAATCTCATTTGAAAACATCCTACACTGAAGG
192 AATCAAGAAACCACC-GAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCATGCACTGAAGG
* * ** *
124530 TCTTATGGATGG-CCGAAGAACTTACAAAACAAGAAACCCCCGATGGCTTAGTTTCTTAAATCTC
256 TCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAA-CCCCGAAAGATTAG-TTCTTAAATCTC
* * *
124594 ATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGG
319 ATTTGAAAA-ATCCTGC-C-AAAGGTCGTATGGAT-A
* * *
124631 CCCGAAGGACTTACAAATCAAGATACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACA
1 CCCGAAGGACTTACAAATAAAGA-AACCCCGAAGGCTTAGTTTCTT-AAATCTCATTTG-AAACA
* *
124696 TCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTA
63 TCCTG-ACTGAAGGTC-TATTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTA
* * * * *
124761 GTTTCTAAAATCTCATTTGAAAACATCCTGTACTGAAGGTCTTATGGATGTCCCGGAGGACTTAC
126 GTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCGAAGGACTTA-
* ** * * * ** **
124826 GCATCATGCTCGAAAGACTTACTGATGGCCCGGAG-GACTTACAAATC-CA---G-AAAC--C--
190 -CA-AAT-CAAG-AA-AC-CACCGAAGG--CTTAGTTTCTTA-AAATCTCATTTGAAAACATCAT
* ** * * ** * * * * **
124881 -C-CCGAAGG-CTTA--G-T--TTCTAA--AATCT-CATTTGAA-AGCATCCTGTACTGA--AGG
246 GCACTGAAGGTCTTATGGATGGCCCGAAGGACT-TACAAATCAAGA-AACCCCG-AAAGATTA-G
* ** * *** * * * *
124932 TCTTTTGGATGGCCCGAAGGTCTT-ACGCATCATGCTCGAA-GAC-TAACT-GATGG
307 T-TCTTAAAT--CTC--A--T-TTGAAAAATCCTGC-CAAAGGTCGT-A-TGGAT-A
* * *
124985 CTCGGAGGACTTACAAATCAAGAAACCCCCGAAAGG-TTAGTTT-TTAAAATCTCATTTGAAAAC
1 CCCGAAGGACTTACAAATAAAGAAA-CCCCG-AAGGCTTAGTTTCTT-AAATCTCATTTG-AAAC
* * ** * **
125048 ATCATGCACTGAAGGTCTTATGGATATCCCGAAGGACTTACAAATCAAGAAACCCCCGACGTCTT
62 ATCCTG-ACTGAAGGTC-TATTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATT
* * * * * *
125113 AGTTTCTTAAATATCATTTGAAAACATCCTGTACTGAAGGTCTTACGGATGGCCCGAATGACTTA
125 AGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCGAAGGACTTA
* * * * *
125178 CAAATCAAGAAACCCCCGAAGGCTTAGTTTTTTAAAATTTCATTGGAAAACATCCTGCACTGAAG
190 CAAATCAAGAAACCACCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCATGCACTGAAG
* *
125243 GTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCT
255 GTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAA-CCCCGAAAGATTAG-TTCTTAAATCT
*
125308 CATTTGAAAACATCCTGCACTGAAA-GTCTTATGGATGA
318 CATTTGAAAA-ATCCTGC-C--AAAGGTCGTATGGAT-A
* * * * *
125346 CCTGAAGGTCTTACAAATCAAGAAACCACCGAAGGCTTAGTTTCTTAAAATTTCATTTTAAAACA
1 CCCGAAGGACTTACAAATAAAGAAACC-CCGAAGGCTTAGTTTCTT-AAATCTCA-TTTGAAACA
* * * *
125411 TCATGCACTGAAGGTCTTATGGATTGCCCGAAGGACTTACAAATCAAGGAACCCCCGAAGGATTA
63 TCCTG-ACTGAAGGTC-TATTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTA
* * * * *
125476 GTTTCTTAAATCTCTTTTGAAAACATCCTGCACAGAAGGTCTTATGGATGGCTCGAAGGACTTAC
126 GTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCGAAGGACTTAC
* * * * *
125541 AAATAAAGAAACC-TCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAATATCTTGTACTGAAGG
191 AAATCAAGAAACCACCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCATGCACTGAAGG
* * *
125604 TCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAAGCCCCGAAGGCTTAGTTTTTTAAATCTC
256 TCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAA-CCCCGAAAGATTAG-TTCTTAAATCTC
* * *
125669 ATTTGAAAATATCCTGCACTGAAGGTCTTATGGATGG
319 ATTTGAAAA-ATCCTGC-C-AAAGGTCGTATGGAT-A
* *
125706 CCCGAAGGACTTATAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACAT
1 CCCGAAGGACTTACAAATAAAGAAA-CCCCGAAGGCTTAGTTTCTTAAATCTCATTTG-AAACAT
* * * * ***
125771 CCTGCACTTAAGGTCTTATGGATGGCCCGAAGGACTTACAAATGAAGAAACCCCTGAAATCTTAG
64 CCTG-ACTGAAGGTC-TATTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTAG
* * * * *
125836 TTTCTTAAAATTTCATTTGAAAATATCCTGCACGGAAGGTGTTATGGATGACCC-AAGGACTTAC
127 TTTCTT-AAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCGAAGGACTTAC
* * * *
125900 ATATTAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCACTGAAGG
191 AAATCAAGAAACCACCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCATGCACTGAAGG
* * * * **
125964 TCTTATGGATTGCCCGAAGGACTTACAAATCATG----CTCGAAAGACTTACTGATGGCCCGGAG
256 TCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCGAAAGA-TTA--G-T---TCTTA-
* ** * ** *
126025 GA-CTTACAAATCAAGAAA-CC--CCTGGAGG-C-T-TAG-T-
313 AATC-T-CATTTGAA-AAATCCTGCC-AAAGGTCGTATGGATA
** * * ** * ** *** ** *
126059 TTCTAA--AATCT-CATTTGAAA-ACATCCTGCACTGAAGGTCTTATGGATGGCCCGAA--GGAC
1 CCCGAAGGACT-TACAAAT-AAAGA-AACC--C-C-GAAGG-CTTA--G-TTTCTTAAATCTCAT
* * * * * *
126118 TT-ACACATCATG-CTCGAAAGACTTATTGATGGCCC-AGAGGACTTGCAAATCAAGAAACACCC
55 TTGAAACATCCTGACT-GAAGGTC-TATTGATGGCCCGA-AGGACTTACAAATCAAGAAACCCCC
* * * * *
126180 GAA-GACTAAGTTTCTAAAATCTCATTTGAAAACATCTTACACTGAAGGTCTTATGGATGACCCG
117 GAAGGA-TTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCG
* * ** * ** * ** ** *
126244 GAGGACTTACGCATCATGCTCGAAAGACTTATTGATGGCCCGGAG-GACTTACAAA--TCA--AG
181 AAGGACTTA--CA-AAT-CAAG-AA-AC-CACCGAAGG--CTTAGTTTCTTA-AAATCTCATTTG
* ** *** *** ** * ** ** * *
126304 -AAAC--C---C-CCGAAGG-CTTA--G-TTTCTAAAATCTCATTTGAAAACATTATGCACTGAA
236 AAAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGAC-TTACAAATCAAGAAACCCCGAA
* * * *** ** * * * * * *
126358 GGTCTTATGGATGGCCCGAA--GGACTT-ACACATCATGCTCGAAAGG-CTTACT-GATGG
300 AG-ATTA--G-T-TCTTAAATCTCATTTGAAAAATCCTGC-C-AAAGGTCGTA-TGGAT-A
* * * *
126414 CCCGAAGGACTTACAAATCAAGAAACCTCCGAAGGCTTAGTTTCTAAAATCTCATTCGAAAGAAT
1 CCCGAAGGACTTACAAATAAAGAAACC-CCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA-CAT
* * * ** ** * *
126479 CCTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACCCATCATGCTCGAAAGACTTACTGAT
64 CCT-GACTGAAGGTC-TATTGATGGCCCGAAGGACTTA--CA-AAT-CAAG-AA-AC-CCCCGAA
*** *** * * ** * * *
126544 GGCCCAGAGGACTTACAA-ATCA--AG-AAACCCCCGAAGGCTTAGTTTCTTAAA-TCTCATTTG
120 GGATTAG-TTTCTTA-AATCTCATTTGAAAACATCC---TGC--A----CTGAAAGTCT--TATG
* ** * * *
126604 AAAACATCCTGCACTGAAAGTCTTATGGATGACCTGAAGGTCTTACAAATCAAGAAACCACCGAA
172 -GATGA--C--C-C-GAAGGAC---T---T-A-C--AAA----------TCAAGAAACCACCGAA
* * *
126669 GGCTTAGTTTCTTAAAATTTCATTTTAAAACATCATGCACTGAAGGTCTTATGGATTGCCCGAAG
210 GGCTTAGTTTCTTAAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAG
* * *
126734 GACTTACAAATCAAGAAACCCCGAAGGATTAGTTCTTAAATCTCTTTTGAAAACTCCTGCCAAAG
275 GACTTACAAATCAAGAAACCCCGAAAGATTAGTTCTTAAATCTCATTTGAAAAATCCTGCCAAAG
* *
126799 GTCTTATGGATG
340 GTCGTATGGATA
* *
126811 CTCGAAGGACTTACAAATAAAGAAACCTCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA-ATCT
1 CCCGAAGGACTTACAAATAAAGAAACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAACATC-
126875 CTTGTACTGAAGGTCT-TTGATGGCCCGAAGGACTTACAAATCAA-AAA-CCCCGAAGGATTAGT
65 C-TG-ACTGAAGGTCTATTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTAGT
* * * *
126937 TT-TTAAATCTCATTTGAAAATATCCTGC-CTGAAGGTCTTATGGATGGCCCGAAGGACTTATAA
128 TTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCGAAGGACTTACAA
* *
127000 ATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCACTGAAGGTC
193 ATCAAGAAACCACCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCATGCACTGAAGGTC
* ** *
127064 TTATGGATGGCCCGAAGGACTTACAAATGAAGAAACCCCTGAAATCTTAGTTTCTTAAATTTCAT
258 TTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCC-GAAAGATTAG-TTCTTAAATCTCAT
*
127129 TTGAAAATATCCTGCACAGGAAGGT-GTGTGGATA
321 TTGAAAA-ATCCTGC-CA--AAGGTCGTATGGATA
* * *
127163 CCCGAAGGACTTACATATTAAGAAACCCCGAAGGCTTAGTTTTTTAAATCTCATTTGAAACATCC
1 CCCGAAGGACTTACAAATAAAGAAACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAACATCC
* * * * ** * *
127228 TGCCTGAAGGTCTATGGATTGCCCGAAAGGAC-TACAAATCATGCTCGAAAGACTTACTGATGGC
66 TGACTGAAGGTCTATTGATGGCCCG-AAGGACTTACAAATCA----AG-AA-AC-CCCCGAAGG-
*** ** * * * * * * *
127292 CCGGAG-GACTTACAA-ATCA--AG-AAAC-CCCTG-AGGCTTAGTTTCTAAAATCTCATTTGAA
122 -ATTAGTTTCTTA-AATCTCATTTGAAAACATCCTGCA--C-T-G-----AAAGTCTTA-TGGAT
* * * * ** * *** *
127350 AACATCC--TGCACTGA-AGGTCTTATGGATGGC-CCGAAGG---A----CTT-ACA-CATCATG
175 GAC--CCGAAGGACTTACAAATC--A-AGAAACCACCGAAGGCTTAGTTTCTTAAAATC-TCAT-
* * * * * ** *** *
127402 CTCGAAAGACTTATTGATGGCCCAG-AGGACTTGCAAATCAAAAACACCGAA-GACTAAGTTTCT
233 -TTGAAA-AC--A-TCAT-GCACTGAAGGTCTT----ATGGATGGC-CCGAAGGAC----TTAC-
* * ** * * * * * ***
127465 AAAATCTCATTTGAAAACATCTTACACTGA--AGGTCTTATGGATGGCCCGGAGGACTT-ACGCA
282 -AAA--TCA--AG-AAAC-CCCGA-A-AGATTAGTTCTTA--AAT--CTC-----ATTTGAAAAA
* * * *
127527 TCATGCTCGAAA-GACTTAT-GATGG
329 TCCTGC-C-AAAGGTCGTATGGAT-A
* * *
127551 CCCG-GGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTCTAAAATCTCATTTGAAAACA
1 CCCGAAGGACTTACAAATAAAGAAA-CCCCGAAGGCTTAG-TTTCTTAAATCTCATTTG-AAACA
** * * * * *
127615 TTATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATG-----CTCGAAAGGCTT
63 TCCTG-ACTGAAGGTC-TATTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCG-AAGGATT
** ** ** * * ** *
127675 ACTGATGGCCCGAAGGA-CTTACAAATCAAGAA-A-CCT-C-C-G-AAGGCTTA--G-T--TTCT
125 A--G-T-TTCTTAA--ATC-T-CATTTGAA-AACATCCTGCACTGAAAGTCTTATGGATGACCCG
* * * ** *** ** *
127728 AA--AATCT-C-ATTCGAAAGAATCCTACACTGAAGGTCTTATGGATGGC-CCGAA--GGACTT-
181 AAGGACT-TACAAATC--AAGAAACC-AC-C-GAAGG-CTTA--G-TTTCTTAAAATCTCATTTG
** * * *
127785 -ACCCATCATGCTC-GAAAGACTTACT-GATGGCCC-AGAGGACTTACAAATCAAGAAACCCCCG
236 AAAACATCATGCACTGAAGGTCTTA-TGGATGGCCCGA-AGGACTTACAAATCAAGAAA-CCCCG
* * * * * * * *
127846 AAGGCTTAATT-TATAAAATCTCATTTGAAAGCATCCTGCACTGATGGTCTTATGGATGG
298 AAAGATTAGTTCT-T-AAATCTCATTTGAAA-AATCCTGC-C-AAAGGTCGTATGGAT-A
* * * * **** * * ** ** **
127905 TCCTAAGGTCTTACCCATCATGCTCGAAAGACTTACTGATGGCCCGGAG-GAC-TAACAAATCA-
1 CCCGAAGGACTTA--CA--A--AT--AAAGAAACCCCGAAGG--CTTAGTTTCTTAA-ATCTCAT
* ** * ** *** * * * **
127967 -AGAAACCCCCGAAGACTTAGTTTCTAAAATCTCATTTGAAAACATCC--TGCACTGA-AGGTCT
55 TTGAAACATCC--TGAC-T-G-----AAGGTCT-A-TTGATGGC--CCGAAGGACTTACAAATC-
* * *** * * * * * * *** * *
128028 TATGGATGGCCCGGAGGACTTACGCATCATGCTCAAAAGACTTA-ATGATGGC--CCGGAGGACT
106 -AAGAAACCCCCGAAGGA-TTA-G--T--TTCT-TAAA-TCTCATTTGAAAACATCC--TGCACT
* * * ** * * * **
128090 TACAAATC--A-AGAAAACCCCGAAGGGTTAGTTTCTAAAATTTCATTTGAAAGAATCCTGCAAT
160 GA-AAGTCTTATGGATGA-CCCGAA-GG--ACTTAC--AAA--TC------AAGAA-AC--CACC
** * * ** *** * * *
128152 GAAGGTCTTATGGATGGC-CAGAAGGTC--TT--ACGTATCATGCTC-GAAAGACTTACTG-ATG
207 GAAGG-CTTA--G-TTTCTTAAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTA-TGGATG
* * * *
128210 GCCC-AGAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAAC
267 GCCCGA-AGGACTTACAAATCAAGAAA-CCCCGAAAGATTAG-TTCTTAAATCTCATTTGAAAA-
* *
128274 ATCCTGCACTGAAGGT-GTTATGGATGG
328 ATCCTGC-C-AAAGGTCG-TATGGAT-A
* **
128301 CCCGAAGGACTTAAAAATCTAGAAACCCACGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACAT
1 CCCGAAGGACTTACAAATAAAGAAACCC-CGAAGGCTTAGTTTCTTAAATCTCATTTG-AAACAT
* * * * * * *
128366 CCTGTACTGAAGGACTTATGGATGTCCCGATGGACTTACAAATCAAAAAACCCTCGAAGGCTTAG
64 CCTG-ACTGAAGGTC-TATTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTAG
* * * * *
128431 TTTCTTAAAATTTTATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCACGAAGGACTTAC
127 TTTCTT-AAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCGAAGGACTTAC
* * * *
128496 AAATCAAGAAACCCCCGAAGGCTTAGTTTTCTT-AAATCTGATTTGAAAACATCCTGCACTGAAA
191 AAATCAAGAAACCACCGAAGGCTTAG-TTTCTTAAAATCTCATTTGAAAACATCATGCACTGAAG
* * * *
128560 GTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTTTAAAATT
255 GTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAA-CCCCGAAAGATTAG-TTCTT-AAATC
* *
128625 TCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGA
317 TCATTTGAAAA-ATCCTGC-C-AAAGGTCGTATGGAT-A
*
128664 CCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACAT
1 CCCGAAGGACTTACAAATAAAGAAA-CCCCGAAGGCTTAGTTTCTTAAATCTCATTTG-AAACAT
* * * ** * *
128729 CTTGCAGTGAAGGTCTTATGGATGGCTTGAAGGACTTACAAGTCAAGAAACCCCCGAAGGCTTAG
64 CCTG-ACTGAAGGTC-TATTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTAG
* * * * * *
128794 TTTCTTAATTCTCATTTGAAAATATCCTGCGCTGAAGGTCTTATGGATGACTCGAAGGGCTTACA
127 TTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCGAAGGACTTACA
* *
128859 AATCAAGAAACC-CCTGAAGGCTTAGTTT-TTTAAATCTCATTTGAAAACATCCTGCACTGAAGG
192 AATCAAGAAACCACC-GAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCATGCACTGAAGG
* * * *
128922 TCTTACGGATGGCCCGAAGAACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTC
256 TCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAA-CCCCGAAAGATTAG-TTCTTAAATCTC
* * *
128987 ATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGC
319 ATTTGAAAA-ATCCTGC-C-AAAGGTCGTATGGAT-A
* *
129024 CCCGAAGGACTTACAAATCAAGAAAGCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACA
1 CCCGAAGGACTTACAAATAAAGAAA-CCCCGAAGGCTTAGTTTCTT-AAATCTCATTTG-AAACA
* *
129089 TCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTA
63 TCCTG-ACTGAAGGTC-TATTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTA
* * * *
129154 GTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTAC
126 GTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCGAAGGACTTAC
* * *
129219 AAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATCTCATTTGAAAGCATCCTGCACTGAAGG
191 AAATCAAGAAACCACCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCATGCACTGAAGG
* * ** * * ** **
129283 TCTTGTGGATGGCCCGAAGGTCTTACGCATCATG----CTCGAAAGACTAACTGATGACCCGAAG
256 TCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCGAAAGA-T---T-A-GTTCTTAA-
** * * * * * ** *
129344 GA-CTTACAAATCAAGAAAGCC--CCGAAGGCTTAGTTTCTAAAA
314 -ATC-T-CATTTGAA-AAATCCTGCCAAAGG--TCGTAT-GGATA
* * * ** ** *
129386 TCTCATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAAAATTCAAGA
1 -C-C---CGAAGGAC-T--T--AC--AA----ATAAAGA-AACCC---CGA---A----------
* * * *** * *
129450 AACCCCCTAAGGCTTAGTTTCTTAAATCTCATTTGAAA-A-CAT-CCTGCACTGAAGGTCTTATG
33 ----------GGCTTAGTTTCTTAAATCTCATTTGAAACATCCTGACTG-A-AG-GTCTATTG--
* * *
129512 GATGGCCCGAAGGACTTACAAATCAAGAAAGCCCCGAAGGCTTAGTTTTTTAAATCTCATTTGAA
83 -ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTAGTTTCTTAAATCTCATTTGAA
* * *
129577 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCTCCGAAGG
147 AACATCCTGCACTGAAAGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCACCGAAGG
* * * *
129642 CTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCACTGAAGGTCTCATGGATGGCCTGAATGA
212 CTTAGTTTCTTAAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGA
* * * *
129706 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAATCATCCT-CCAC
277 CTTACAAATCAAGAAA-CCCCGAAAGATTAG-TTCTT-AAATCTCATTTGAAA-AATCCTGCCA-
* *
129770 TGAAAGTCTTATGGATGA
337 --AAGGTCGTATGGAT-A
* *
129788 CCCGAAGGACTTACAAATCAATAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACAT
1 CCCGAAGGACTTACAAATAAAGAAA-CCCCGAAGGCTTAGTTTCTTAAATCTCATTTG-AAACAT
* *
129853 CCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAG
64 CCTG-ACTGAAGGTC-TATTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTAG
* * * *
129918 TTTCTTAAAATTTCATTT-AAAAAATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
127 TTTCTT-AAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCGAAGGACTTAC
* * *
129982 AAATCAAGAAACC-CTCGAAGACTTAGTTTTCTT-AAATCTCATTTGAAAACTTCCTGCACTGAA
191 AAATCAAGAAACCAC-CGAAGGCTTAG-TTTCTTAAAATCTCATTTGAAAACATCATGCACTGAA
* * *
130045 AGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAAAT
254 GGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCC-GAAAGATTAG-TTCTT-AAAT
* * * * *
130110 TTCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGG
316 CTCATTTGAAAA-ATCCTGC-C-AAAGGTCGTATGGAT-A
* *
130150 CCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTAGTTTCTTAAATCTCATTTGAAAACAT
1 CCCGAAGGACTTACAAATAAAGAAA-CCCCGAAGGCTTAGTTTCTTAAATCTCATTTG-AAACAT
* * * * *
130215 CCTGCACTGAAGGTCTTATTAATGGCTCGAAGGACTTACAAATAAAGAAA-CCTCGAAGGCTTAG
64 CCTG-ACTGAAGGTC-TATTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTAG
* * * *
130279 TTTCTTAAATCTCATTTGAAAATATCTTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACA
127 TTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCGAAGGACTTACA
* *
130344 AATCAAGAAAGCC-CCGAAGGCTTAGTTT-TTTAAATCTCATTTGAAAACATCCTGCACTGAAGG
192 AATCAAGAAA-CCACCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCATGCACTGAAGG
* * *
130407 TCTTATGGGTGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTC
256 TCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAA-CCCCGAAAGATTAG-TTCTTAAATCTC
* * *
130472 ATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGG
319 ATTTGAAAA-ATCCTGC-C-AAAGGTCGTATGGAT-A
* ** * * *
130509 CCCGAAGGACTTACAAATGAAGAAACGCCCGAAATCTTAGTTTCATAAAATTTCATTTGAAAATA
1 CCCGAAGGACTTACAAATAAAGAAAC-CCCGAAGGCTTAGTTTC-TTAAATCTCATTTG-AAACA
* * * * *
130574 TCCTGCACGGAAGGTGTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTA
63 TCCTG-ACTGAAGGT-CTATTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTA
*
130639 GTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATTG-CCCGAAGGACTTA
126 GTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATGGA-TGACCCGAAGGACTTA
* * * ** ** *
130703 CAAATCATGATCGAAAGACTTACTGATGGCCCGGAG-GACTTACAAA--TCA--AG-AAAC--C-
190 CAAATCA--A--G-AA-AC-CACCGAAGG--CTTAGTTTCTTA-AAATCTCATTTGAAAACATCA
* ** * * ** * * * **
130759 --C-CTCAAGG-CTTA--G-T--TTCTAA--AATCT-CATTTGAA-AACATCCTGCACTGA--AG
245 TGCACTGAAGGTCTTATGGATGGCCCGAAGGACT-TACAAATCAAGAA-ACCCCG-AAAGATTAG
* * * * * *** * * * * *
130809 GTCATACGGATGGCCCGGAGGACTT-ACGTATCATGCTCGAAAGAT-TTACT-AATGG
307 TTCTTA--AAT--CTC-----ATTTGAAAAATCCTGC-C-AAAGGTCGTA-TGGAT-A
* *
130864 CCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAGCAT
1 CCCGAAGGACTTACAAATAAAGAAA-CCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA-CAT
* * *
130929 CCTGCACTGAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTAACTGAT
64 CCTG-ACTGAAGGTC-TATTGATGGCCCGAAGGACTTA--CA--A--ATC--AAGA--AAC----
* * *** ** ** **** ** ** * ** *
130994 GGCCCGGAGGACTTACAAATCAAGAAAT-TC--CCGAAGGGTTAGT-TTCT-AAAATCACATTTG
113 -CCCCGAAGGA-TTA-GTTTC-TTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTA-TGG
** * *** ** ***
131054 AAAACATCTTTCATTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCAAA
173 ATGAC--C---C---GAAGGACTTACAAAT--CAAGAA--ACCAC-----C--G---------AA
* *
131119 GGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAT
210 GGCTTAGTTTCTTAAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAG
* * * * *
131183 GACTTACAAATCAAGAAACTCCCGAAGGCTTAGTTTTTTAAAATTTCATTTGAAAACATCATGCA
275 GACTTACAAATCAAGAAAC-CCCGAAAGATTAG-TTCTT-AAATCTCATTTGAAAA-ATCCTGC-
* *
131248 CTGAAGGTCTTATGGATGA
335 C-AAAGGTCGTATGGAT-A
* * * *
131267 CCCGAAGGACTTACAAGTCAAGAAACCCCTGAAGGATTAGTTTCTTAAATCTTATTTGAAAACAT
1 CCCGAAGGACTTACAAATAAAGAAACCCC-GAAGGCTTAGTTTCTTAAATCTCATTTG-AAACAT
* * * * * * *
131332 CCTACACTGAAGGTCTTATGGATGGCTCGAAGGACGTACAAATAAAGAAA-CCTCGAAGGCTTAG
64 CCT-GACTGAAGGTC-TATTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTAG
* * * * *
131396 TTTCTTAAATCTCATTTGAAAATATCTTGCACTGAAGGTCTTATGGATGGCCCGAAGGACCTACA
127 TTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCGAAGGACTTACA
* *
131461 AATCAAGAAAGCC-CCGAAGGCTTAGTTT-TTTAAATCTCATTTGAAAACATCCTGCACTGAAGG
192 AATCAAGAAA-CCACCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCATGCACTGAAGG
* *
131524 TCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTC
256 TCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAA-CCCCGAAAGATTAG-TTCTTAAATCTC
* *
131589 ATTTGAAAACATCCTGCACTGAAGGT-GTTATGGATGG
319 ATTTGAAAA-ATCCTGC-C-AAAGGTCG-TATGGAT-A
* ** * *
131626 CCCG-AGTGACTTACAAATGAAGAAACCCCCGAATTCTTAGTTTCTTAAAATTTCATTTGAAAAT
1 CCCGAAG-GACTTACAAATAAAGAAA-CCCCGAAGGCTTAGTTTCTT-AAATCTCATTTG-AAAC
* * * * *
131690 ATCCTGCACGGAAGGT-T-TGGATGACCCGAAGGACTTACAAATCAAGAAACCCTCGAAGGCTTA
62 ATCCTG-ACTGAAGGTCTATTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTA
* * *
131753 GTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGATTTAC
126 GTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCGAAGGACTTAC
* * ** * * * * *
131818 AAATGAAGAAACCCCCGAAATCATAGTTTCTTAAAATTTCATTTGAAAATATCCTGCACGGAAGG
191 AAATCAAGAAACCACCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCATGCACTGAAGG
* * * * *
131883 TGTTATGGATGACCCGAAGGACTTACAAATCAAGATACCCCCGAAGGCTTAGTTTCTTAAATCTC
256 TCTTATGGATGGCCCGAAGGACTTACAAATCAAGA-AACCCCGAAAGATTAG-TTCTTAAATCTC
** * *
131948 ATTTGAAAACATCCTGTACTGAAGGTCTTATGGATTG
319 ATTTGAAAA-ATCCTG--CCAAAGGTCGTATGGA-TA
131985 CCCGAAGGACTTACAAAT
1 CCCGAAGGACTTACAAAT
132003 CATGCTCGAA
Statistics
Matches: 5891, Mismatches: 1149, Indels: 1385
0.70 0.14 0.16
Matches are distributed among these distances:
344 7 0.00
345 5 0.00
346 7 0.00
347 72 0.01
348 40 0.01
349 40 0.01
350 40 0.01
351 54 0.01
352 112 0.02
353 227 0.04
354 196 0.03
355 97 0.02
356 54 0.01
357 66 0.01
358 138 0.02
359 530 0.09
360 878 0.15
361 773 0.13
362 775 0.13
363 211 0.04
364 48 0.01
365 18 0.00
366 17 0.00
367 37 0.01
368 50 0.01
369 54 0.01
370 31 0.01
371 14 0.00
372 17 0.00
373 36 0.01
374 25 0.00
375 25 0.00
376 33 0.01
377 18 0.00
378 15 0.00
379 7 0.00
380 22 0.00
381 13 0.00
382 24 0.00
383 26 0.00
384 18 0.00
385 13 0.00
386 15 0.00
387 56 0.01
388 51 0.01
389 48 0.01
390 23 0.00
391 36 0.01
392 31 0.01
393 6 0.00
394 24 0.00
395 7 0.00
396 190 0.03
397 51 0.01
398 26 0.00
399 19 0.00
400 17 0.00
401 30 0.01
402 230 0.04
403 111 0.02
404 7 0.00
405 11 0.00
406 6 0.00
407 10 0.00
408 2 0.00
409 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (351 bp):
CCCGAAGGACTTACAAATAAAGAAACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAACATCC
TGACTGAAGGTCTATTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTAGTTTC
TTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCGAAGGACTTACAAATC
AAGAAACCACCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTA
TGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCGAAAGATTAGTTCTTAAATCTCATTTGAA
AAATCCTGCCAAAGGTCGTATGGATA
Found at i:127695 original size:20 final size:21
Alignment explanation
Indices: 127636--127697 Score: 58
Period size: 20 Copynumber: 3.0 Consensus size: 21
127626 AGGTCTTATG
127636 GATGGCCCGAAGGACTTACACAT
1 GATGGCCCGAAGGACTT--ACAT
* *
127659 CAT-GCTCGAAAGG-CTTAC-T
1 GATGGCCCG-AAGGACTTACAT
127678 GATGGCCCGAAGGACTTACA
1 GATGGCCCGAAGGACTTACA
127698 AATCAAGAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 10
0.69 0.09 0.22
Matches are distributed among these distances:
19 7 0.23
20 11 0.35
22 7 0.23
23 6 0.19
ACGTcount: A:0.29, C:0.26, G:0.26, T:0.19
Consensus pattern (21 bp):
GATGGCCCGAAGGACTTACAT
Found at i:127774 original size:132 final size:132
Alignment explanation
Indices: 127163--128313 Score: 1675
Period size: 132 Copynumber: 8.8 Consensus size: 132
127153 TGTGTGGATA
* * * *
127163 CCCGAAGGACTTACATATTAAGAAA-CCCCGAAGGCTTAGTTTTTTAAATCTCATTTG-AAACAT
1 CCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACAT
* *
127226 CCTGC-CTGAAGGTC-TATGGATTGCCCGAAAGGAC-TACAAATCATGCTCGAAAGACTTACTGA
66 CCTGCACTGAAGGTCTTATGGATGGCCCG-AAGGACTTACACATCATGCTCGAAAGACTTACTGA
127288 TGG
130 TGG
* *
127291 CCCGGAGGACTTACAAATCAAGAAACCCCTG-AGGCTTAGTTTCTAAAATCTCATTTGAAAACAT
1 CCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACAT
*
127355 CCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTATTGAT
66 CCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGAT
127420 GG
131 GG
* * * *
127422 CCC-AGAGGACTTGCAAATCAA-AAA-CACCGAAGACTAAGTTTCTAAAATCTCATTTGAAAACA
1 CCCGA-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACA
* * * *
127484 TCTTACACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTA-TGA
65 TCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGA
127548 TGG
130 TGG
*
127551 CCCG-GGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTCTAAAATCTCATTTGAAAACA
1 CCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAG-TTTCTAAAATCTCATTTGAAAACA
** *
127615 TTATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGGCTTACTGA
65 TCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGA
127680 TGG
130 TGG
* *
127683 CCCGAAGGACTTACAAATCAAGAAACCTCCGAAGGCTTAGTTTCTAAAATCTCATTCGAAAGA-A
1 CCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA-ACA
* *
127747 TCCTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACCCATCATGCTCGAAAGACTTACTGA
65 TCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGA
127812 TGG
130 TGG
* * *
127815 CCC-AGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAATTTATAAAATCTCATTTGAAAGCA
1 CCCGA-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACA
* * * * *
127879 TCCTGCACTGATGGTCTTATGGATGGTCCTAAGGTCTTACCCATCATGCTCGAAAGACTTACTGA
65 TCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGA
127944 TGG
130 TGG
* * *
127947 CCCGGAGGACTAACAAATCAAGAAACCCCCGAAGACTTAGTTTCTAAAATCTCATTTGAAAACAT
1 CCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACAT
* * * *
128012 CCTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCAAAAGACTTAATGAT
66 CCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGAT
128077 GG
131 GG
* * * *
128079 CCCGGAGGACTTACAAATCAAGAAAACCCCGAAGGGTTAGTTTCTAAAATTTCATTTGAAAGA-A
1 CCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA-ACA
* * * **
128143 TCCTGCAATGAAGGTCTTATGGATGGCCAGAAGGTCTTACGTATCATGCTCGAAAGACTTACTGA
65 TCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGA
128208 TGG
130 TGG
*
128211 CCC-AGAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACA
1 CCCGA-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACA
*
128275 TCCTGCACTGAAGGTGTTATGGATGGCCCGAAGGACTTA
65 TCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTA
128314 AAAATCTAGA
Statistics
Matches: 920, Mismatches: 83, Indels: 36
0.89 0.08 0.03
Matches are distributed among these distances:
128 60 0.07
129 30 0.03
130 116 0.13
131 140 0.15
132 539 0.59
133 35 0.04
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.25
Consensus pattern (132 bp):
CCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACAT
CCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTGAT
GG
Found at i:128359 original size:90 final size:90
Alignment explanation
Indices: 128206--129308 Score: 1749
Period size: 90 Copynumber: 12.2 Consensus size: 90
128196 AAGACTTACT
* *
128206 GATGGCCC-AGAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
1 GATGGCCCGA-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGA
*
128270 AAACATCCTGCACTGAAGGTGTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* * *
128296 GATGGCCCGAAGGACTTAAAAATCTAGAAACCCACGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
128361 AACATCCTGTACTGAAGGACTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * * * * *
128386 GATGTCCCGATGGACTTACAAATCAAAAAACCCTCGAAGGCTTAGTTTCTTAAAATTTTATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
128451 AAACATCCTGCACTGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* *
128477 GATGGCACGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTCTTAAATCTGATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAG-TTTCTTAAATCTCATTTGA
*
128542 AAACATCCTGCACTGAAAGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* *
128568 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
128633 AAACATCCTGCACTGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
*
128659 GATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
128724 AACATCTTGCAGTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
** * *
128749 GATGGCTTGAAGGACTTACAAGTCAAGAAACCCCCGAAGGCTTAGTTTCTTAATTCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
128814 AATATCCTGCGCTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * * * *
128839 GATGACTCGAAGGGCTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTTTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
128904 AACATCCTGCACTGAAGGTCTTACG
66 AACATCCTGCACTGAAGGTCTTATG
*
128929 GATGGCCCGAAGAACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
128994 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * *
129019 GATGCCCCGAAGGACTTACAAATCAAGAAAGCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
*
129084 AAACATCCTGCACTGAAGGTCTTATA
65 AAACATCCTGCACTGAAGGTCTTATG
*
129110 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
129175 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
129200 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
129265 AGCATCCTGCACTGAAGGTCTTGTG
66 AACATCCTGCACTGAAGGTCTTATG
*
129290 GATGGCCCGAAGGTCTTAC
1 GATGGCCCGAAGGACTTAC
129309 GCATCATGCT
Statistics
Matches: 931, Mismatches: 77, Indels: 10
0.91 0.08 0.01
Matches are distributed among these distances:
90 599 0.64
91 326 0.35
92 6 0.01
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:128520 original size:181 final size:181
Alignment explanation
Indices: 128206--132004 Score: 4466
Period size: 181 Copynumber: 20.6 Consensus size: 181
128196 AAGACTTACT
*
128206 GATGGCCC-AGAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATCTCATTTG
1 GATGGCCCGA-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTG
* * * *
128269 AAAACATCCTGCACTGAAGGTGTTATGGATGGCCCGAAGGACTTAAAAATCTAGAAACCCACGAA
65 AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAA
* *
128334 GGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGTACTGAAGGACTTATG
130 GGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
* * * * * *
128386 GATGTCCCGATGGACTTACAAATCAAAAAACCCTCGAAGGCTTAGTTTCTTAAAATTTTATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
*
128451 AAACATCCTGCACTGAAGGTCTTATGGATGGCACGAAGGACTTACAAATCAAGAAACCCCCGAAG
66 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* *
128516 GCTTAGTTTTCTTAAATCTGATTTGAAAACATCCTGCACTGAAAGTCTTATG
131 GCTTAG-TTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
* *
128568 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
*
128633 AAACATCCTGCACTGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
66 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* *
128698 GCTTAGTTTCTTAAATCTCATTTGAAAACATCTTGCAGTGAAGGTCTTATG
131 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
** * *
128749 GATGGCTTGAAGGACTTACAAGTCAAGAAACCCCCGAAGGCTTAGTTTCTT-AATTCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* * * * * *
128813 AAATATCCTGCGCTGAAGGTCTTATGGATGACTCGAAGGGCTTACAAATCAAGAAACCCCTGAAG
66 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* *
128878 GCTTAGTTTTTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTACG
131 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
*
128929 GATGGCCCGAAGAACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* *
128993 AAACATCCTGCACTGAAGGTCTTATGGATGCCCCGAAGGACTTACAAATCAAGAAAGCCCCGAAG
66 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* *
129058 GCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACTGAAGGTCTTATA
131 GCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
129110 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
*
129174 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAG
66 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* * *
129239 GCTTAGTTTCTAAAATCTCATTTGAAAGCATCCTGCACTGAAGGTCTTGTG
131 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
* * * ***
129290 GATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTAACTGATGACCCGAAGGACTTACAAAT
1 GATGGCCCGAAGGACTTA--CA--A--ATC--AAGA--AAC-----CCCCGAAGG-CTTA-GTTT
** * *
129355 CAAGAAAGCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTA
49 C--TTAA------AA-TCTCA---T-T-----------TGAAAACATCCTGCACTGAAGGTCTTA
*
129420 TGGATGGCCCGAAGGACTTA-AAATTCAAGAAACCCCCTAAGGCTTAGTTTCTTAAATCTCATTT
90 TGGATGGCCCGAAGGACTTACAAA-TCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTT
129484 GAAAACATCCTGCACTGAAGGTCTTATG
154 GAAAACATCCTGCACTGAAGGTCTTATG
* *
129512 GATGGCCCGAAGGACTTACAAATCAAGAAAGCCCCGAAGGCTTAGTTT-TTTAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
*
129576 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCTCCGAAG
66 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
*
129641 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTCATG
131 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
* * *
129692 GATGGCCTGAATGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* * * * *
129757 AATCATCCTCCACTGAAAGTCTTATGGATGACCCGAAGGACTTACAAATCAATAAACCCCCGAAG
66 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
129822 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
131 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
*
129873 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTT-A
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* *
129937 AAAAATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCTCGAAG
66 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* * *
130002 ACTTAGTTTTCTTAAATCTCATTTGAAAACTTCCTGCACTGAAAGTCTTATG
131 GCTTAG-TTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
* *
130054 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
*
130119 AAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
66 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* *
130184 GATTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATT
131 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
* * * *
130235 AATGGCTCGAAGGACTTACAAATAAAGAAA-CCTCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* * *
130298 AAATATCTTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAAGCCCCGAAG
66 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
*
130363 GCTTAGTTTTTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
131 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
*
130414 GGTGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* * *
130478 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATGAAGAAACGCCCGAAA
66 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* * * * * *
130543 TCTTAGTTTCATAAAATTTCATTTGAAAATATCCTGCACGGAAGGTGTTATG
131 GCTTAGTTTC-TTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
*
130595 GATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* *
130659 AAACATCCTGCACTGAAGGTCTTATGGATTGCCCGAAGGACTTACAAATCATGATCGAAAGACTT
66 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA--A--G-AA-AC-C
* * * ** ** * * * * ** **
130724 ACTGATGGCCCGGAG-GACTTACAA-ATCA--AGAAACCCCTCAAGGCTTAGTTTCT-AAAATCT
124 CCCGAAGG--CTTAGTTTCTTA-AATCTCATTTGAAA-ACATC----C-T-G-CACTGAAGGTCT
* *
130784 CATTT
178 TA-TG
*** * * * ** * *** * **
130789 GAAAACATCC--TGCACTGA-AGGTCATACGGATGGCCCGGAGGACTTACGTATCATGCTCGAAA
1 GATGGC--CCGAAGGACTTACAAATCA-A-GAAACCCCCGAAGG-CTTA-GT-T--T-CTTAAAA
* ** * * * * ***
130851 ---GATTT-ACTA-AT--GGC-CCGAAGGACTTACAAATCAAGAAACCCCCGAAGG-CTTAGTTT
56 TCTCATTTGAAAACATCCTGCACTGAAGGTCTT----AT---GGATGGCCCGAAGGACTTA----
* ** *** ** *
130907 CTAAAATCTCATTTGAAAGCATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGTC--TT--AC
110 C--AAA--TCA--AGAAA-C--CC--C-C-GAAGG-CTTA--G-TTTCTTAAATCTCATTTGAAA
* * * * * *
130968 GCATCATGCTC-GAAAGACTAACT-
158 ACATCCTGCACTGAAGGTCTTA-TG
* ** * *
130991 GATGGCCCGGAGGACTTACAAATCAAGAAATTCCCGAAGGGTTAGTTTC-TAAAATCACATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* * * *
131055 AAACATCTTTCATTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCAAAG
66 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
131120 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
131 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
* * * *
131171 GATGGCCCGAATGACTTACAAATCAAGAAACTCCCGAAGGCTTAGTTTTTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* * * *
131236 AAACATCATGCACTGAAGGTCTTATGGATGACCCGAAGGACTTACAAGTCAAGAAACCCCTGAAG
66 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* * *
131301 GATTAGTTTCTTAAATCTTATTTGAAAACATCCTACACTGAAGGTCTTATG
131 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
* * * *
131352 GATGGCTCGAAGGACGTACAAATAAAGAAA-CCTCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* * * *
131415 AAATATCTTGCACTGAAGGTCTTATGGATGGCCCGAAGGACCTACAAATCAAGAAAGCCCCGAAG
66 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
*
131480 GCTTAGTTTTTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
131 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
131531 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* *
131595 AAACATCCTGCACTGAAGGTGTTATGGATGGCCCG-AGTGACTTACAAATGAAGAAACCCCCGAA
66 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAG-GACTTACAAATCAAGAAACCCCCGAA
** * * *
131659 TTCTTAGTTTCTTAAAATTTCATTTGAAAATATCCTGCACGGAAGG--TT-TG
130 GGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
* *
131709 GATGACCCGAAGGACTTACAAATCAAGAAACCCTCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* * *
131773 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGATTTACAAATGAAGAAACCCCCGAAA
66 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* * * * * *
131838 TCATAGTTTCTTAAAATTTCATTTGAAAATATCCTGCACGGAAGGTGTTATG
131 GCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
* *
131890 GATGACCCGAAGGACTTACAAATCAAGATACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* *
131954 AAACATCCTGTACTGAAGGTCTTATGGATTGCCCGAAGGACTTACAAATCA
66 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
132005 TGCTCGAAAG
Statistics
Matches: 3138, Mismatches: 343, Indels: 275
0.84 0.09 0.07
Matches are distributed among these distances:
175 6 0.00
176 1 0.00
177 2 0.00
178 171 0.05
179 312 0.10
180 847 0.27
181 1132 0.36
182 238 0.08
183 3 0.00
184 1 0.00
185 2 0.00
186 12 0.00
187 4 0.00
188 15 0.00
189 3 0.00
190 9 0.00
191 2 0.00
192 3 0.00
193 10 0.00
194 24 0.01
195 33 0.01
196 17 0.01
197 10 0.00
198 10 0.00
199 8 0.00
200 12 0.00
201 22 0.01
202 21 0.01
203 13 0.00
204 3 0.00
205 5 0.00
206 11 0.00
207 11 0.00
208 5 0.00
209 2 0.00
210 8 0.00
211 3 0.00
212 4 0.00
213 4 0.00
214 4 0.00
216 2 0.00
218 1 0.00
220 2 0.00
221 3 0.00
222 127 0.04
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (181 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
Found at i:128888 original size:271 final size:270
Alignment explanation
Indices: 128206--130709 Score: 3612
Period size: 271 Copynumber: 9.1 Consensus size: 270
128196 AAGACTTACT
* *
128206 GATGGCCC-AGAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
1 GATGGCCCGA-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGA
* * * *
128270 AAACATCCTGCACTGAAGGTGTTATGGATGGCCCGAAGGACTTAAAAATCTAGAAACCCACGAAG
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* * * *
128335 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGTACTGAAGGACTTATGGATGTCCCGATGGA
130 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGA
* * * *
128400 CTTACAAATCAAAAAACCCTCGAAGGCTTAGTTTCTTAAAATTTTATTTGAAAACATCCTGCACT
195 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCACT
128465 GAAGGTCTTATG
259 GAAGGTCTTATG
* *
128477 GATGGCACGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTCTTAAATCTGATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAG-TTTCTTAAATCTCATTTGA
*
128542 AAACATCCTGCACTGAAAGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* * *
128607 GCTTAGTTTTTTAAAATTTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGACCCGAAGG
130 GCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGG
* *
128672 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCTTGCAGT
194 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACT
128737 GAAGGTCTTATG
259 GAAGGTCTTATG
** * *
128749 GATGGCTTGAAGGACTTACAAGTCAAGAAACCCCCGAAGGCTTAGTTTCTTAATTCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * * * *
128814 AATATCCTGCGCTGAAGGTCTTATGGATGACTCGAAGGGCTTACAAATCAAGAAACCCCTGAAGG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
* * *
128879 CTTAGTTTTTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTACGGATGGCCCGAAGAAC
131 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAC
128944 TTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGA
196 TTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGA
129009 AGGTCTTATG
261 AGGTCTTATG
* * *
129019 GATGCCCCGAAGGACTTACAAATCAAGAAAGCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
*
129084 AAACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* *
129149 GCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGGAGGA
130 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGA
* *
129214 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAGCATCCTGCACTG
195 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTG
*
129279 AAGGTCTTGTG
260 AAGGTCTTATG
* * * ***
129290 GATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTAACTGATGACCCGAAGGACTTACAAAT
1 GATGGCCCGAAGGACTTA--CA--A--ATC--AAGA--AAC-----CCCCGAAGG-CTTA-GTTT
** * * *
129355 CAAGAAAGCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTA
49 C---TTA------AA-TCTCA-TTT-GAAAA---C------A----TCCTGCACTGAAGGTCTTA
*
129420 TGGATGGCCCGAAGGACTTA-AAATTCAAGAAACCCCCTAAGGCTTAGTTTCTTAAATCTCATTT
89 TGGATGGCCCGAAGGACTTACAAA-TCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTT
*
129484 GAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAAGCCCCGA
153 GAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGA
*
129549 AGGCTTAGTTTTTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
218 AGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
*
129602 GATGGCCCGAAGGACTTACAAATCAAGAAACCTCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * *
129667 AACATCCTGCACTGAAGGTCTCATGGATGGCCTGAATGACTTACAAATCAAGAAACCCCCGAAGG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
* * * * *
129732 CTTAGTTTCTTAAAATTTCATTTGAAATCATCCTCCACTGAAAGTCTTATGGATGACCCGAAGGA
131 CTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGA
*
129797 CTTACAAATCAATAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTG
195 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTG
129862 AAGGTCTTATG
260 AAGGTCTTATG
*
129873 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTT-A
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* *
129937 AAAAATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCTCGAAG
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* * *
130002 ACTTAGTTTTCTTAAATCTCATTTGAAAACTTCCTGCACTGAAAGTCTTATGGATGGCCCGAAGG
130 GCTTAG-TTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGG
* * *
130067 ACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCAC
194 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCAC
130132 TGAAGGTCTTATG
258 TGAAGGTCTTATG
*
130145 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
** * * *
130210 AACATCCTGCACTGAAGGTCTTATTAATGGCTCGAAGGACTTACAAATAAAGAAA-CCTCGAAGG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
* *
130274 CTTAGTTTCTTAAATCTCATTTGAAAATATCTTGCACTGAAGGTCTTATGGATGGCCCGAAGGAC
131 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAC
* *
130339 TTACAAATCAAGAAAGCCCCGAAGGCTTAGTTTTTTAAATCTCATTTGAAAACATCCTGCACTGA
196 TTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGA
130404 AGGTCTTATG
261 AGGTCTTATG
*
130414 GGTGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * **
130479 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATGAAGAAACGCCCGAAAT
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
* * * * * *
130544 CTTAGTTTCATAAAATTTCATTTGAAAATATCCTGCACGGAAGGTGTTATGGATGACCCGAAGGA
131 CTTAGTTTC-TTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGA
130609 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTG
195 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTG
130674 AAGGTCTTATG
260 AAGGTCTTATG
*
130685 GATTGCCCGAAGGACTTACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
130710 TGATCGAAAG
Statistics
Matches: 2016, Mismatches: 162, Indels: 110
0.88 0.07 0.05
Matches are distributed among these distances:
269 151 0.07
270 336 0.17
271 838 0.42
272 321 0.16
273 85 0.04
274 1 0.00
275 1 0.00
277 2 0.00
279 4 0.00
280 1 0.00
281 2 0.00
283 4 0.00
284 3 0.00
285 3 0.00
286 10 0.00
287 4 0.00
288 2 0.00
290 1 0.00
292 1 0.00
295 2 0.00
296 6 0.00
297 9 0.00
298 3 0.00
299 4 0.00
302 4 0.00
304 4 0.00
306 2 0.00
308 2 0.00
310 2 0.00
311 3 0.00
312 205 0.10
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.27
Consensus pattern (270 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAC
TTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGA
AGGTCTTATG
Found at i:129490 original size:90 final size:90
Alignment explanation
Indices: 129332--132004 Score: 3104
Period size: 90 Copynumber: 29.3 Consensus size: 90
129322 AAGACTAACT
* * *
129332 GATGACCCGAAGGACTTACAAATCAAGAAAGCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
129397 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
129422 GATGGCCCGAAGGACTTA-AAATTCAAGAAACCCCCTAAGGCTTAGTTTCTTAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAA-TCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGA
129486 AAACATCCTGCACTGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* *
129512 GATGGCCCGAAGGACTTACAAATCAAGAAAGCCCCGAAGGCTTAGTTTTTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
129577 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
129602 GATGGCCCGAAGGACTTACAAATCAAGAAACCTCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
129667 AACATCCTGCACTGAAGGTCTCATG
66 AACATCCTGCACTGAAGGTCTTATG
* * *
129692 GATGGCCTGAATGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* * *
129757 AATCATCCTCCACTGAAAGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* *
129783 GATGACCCGAAGGACTTACAAATCAATAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
129848 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
129873 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTT-A
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
*
129937 AAAAATCCTGCACTGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* *
129963 GATGGCCCGAAGGACTTACAAATCAAGAAACCCTCGAAGACTTAGTTTTCTTAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAG-TTTCTTAAATCTCATTTGA
* *
130028 AAACTTCCTGCACTGAAAGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* *
130054 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
*
130119 AAACATCATGCACTGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
*
130145 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
130210 AACATCCTGCACTGAAGGTCTTATT
66 AACATCCTGCACTGAAGGTCTTATG
* * * *
130235 AATGGCTCGAAGGACTTACAAATAAAGAAA-CCTCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
130299 AATATCTTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
130324 GATGGCCCGAAGGACTTACAAATCAAGAAAGCCCCGAAGGCTTAGTTTTTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
130389 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
130414 GGTGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
130479 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * ** * *
130504 GATGGCCCGAAGGACTTACAAATGAAGAAACGCCCGAAATCTTAGTTTCATAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TTAAATCTCATTTGA
* * *
130569 AAATATCCTGCACGGAAGGTGTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
*
130595 GATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
130660 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* ** * * ** **
130685 GATTGCCCGAAGGACTTACAAATCATGATCGAAAGACTTACTGATGGCCCGGAG-GACTTACAA-
1 GATGGCCCGAAGGACTTACAAATCA--A--G-AA-AC-CCCCGAAGG--CTTAGTTTCTTA-AAT
* * * * ** ** * *
130748 ATCA--AGAAACCCCTCAAGGCTTAGTTTCT-AAAATCTCATTT
56 CTCATTTGAAA-ACATC----C-T-G-CACTGAAGGTCTTA-TG
*** * * * ** * *** * *
130789 GAAAACATCC--TGCACTGA-AGGTCATACGGATGGCCCGGAGGACTTACGTATCATGCTCGAAA
1 GATGGC--CCGAAGGACTTACAAATCA-A-GAAACCCCCGAAGG-CTTA-GT-T--T-CT-TAAA
* ** * * *
130851 ---GATTT-ACTA-AT--GGC-CCGAAGGACTTACAAATCAAG
55 TCTCATTTGAAAACATCCTGCACTGAAGGTCTT----AT---G
* *** *
130886 AAACCCCCGAAGG-CTTAGTTTCTAAAATCTCATTTGAAAGCATCCTGCACTGAAGGTCTTATGG
1 GATGGCCCGAAGGACTTA----C--AAA--TCA--AGAAA-C--CC--C-C-GAAGG-CTTA--G
** *** ** ** * * * * *
130950 ATGGCCCGAAGGTC--TT--ACGCATCATGCTC-GAAAGACTAACT-
46 -TTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTA-TG
* ** * * *
130991 GATGGCCCGGAGGACTTACAAATCAAGAAATTCCCGAAGGGTTAGTTTCTAAAATCACATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * *
131056 AACATCTTTCATTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
131081 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
131146 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * * *
131171 GATGGCCCGAATGACTTACAAATCAAGAAACTCCCGAAGGCTTAGTTTTTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
*
131236 AAACATCATGCACTGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* * * * *
131262 GATGACCCGAAGGACTTACAAGTCAAGAAACCCCTGAAGGATTAGTTTCTTAAATCTTATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
131327 AACATCCTACACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * * *
131352 GATGGCTCGAAGGACGTACAAATAAAGAAA-CCTCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
131416 AATATCTTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * *
131441 GATGGCCCGAAGGACCTACAAATCAAGAAAGCCCCGAAGGCTTAGTTTTTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
131506 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
131531 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
131596 AACATCCTGCACTGAAGGTGTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* ** *
131621 GATGGCCCG-AGTGACTTACAAATGAAGAAACCCCCGAATTCTTAGTTTCTTAAAATTTCATTTG
1 GATGGCCCGAAG-GACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTG
* *
131685 AAAATATCCTGCACGGAAGG--TT-TG
64 AAAACATCCTGCACTGAAGGTCTTATG
* *
131709 GATGACCCGAAGGACTTACAAATCAAGAAACCCTCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
131774 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * ** * *
131799 GATGGCCCGAAGGATTTACAAATGAAGAAACCCCCGAAATCATAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* * *
131864 AAATATCCTGCACGGAAGGTGTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* *
131890 GATGACCCGAAGGACTTACAAATCAAGATACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
131955 AACATCCTGTACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
131980 GATTGCCCGAAGGACTTACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
132005 TGCTCGAAAG
Statistics
Matches: 2204, Mismatches: 287, Indels: 184
0.82 0.11 0.07
Matches are distributed among these distances:
85 5 0.00
86 1 0.00
87 31 0.01
88 48 0.02
89 184 0.08
90 1261 0.57
91 524 0.24
92 2 0.00
93 1 0.00
94 2 0.00
95 5 0.00
96 13 0.01
97 14 0.01
98 15 0.01
99 5 0.00
100 5 0.00
101 4 0.00
102 4 0.00
103 16 0.01
104 12 0.01
105 13 0.01
106 7 0.00
108 2 0.00
109 3 0.00
110 6 0.00
111 1 0.00
112 17 0.01
113 2 0.00
114 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:129501 original size:222 final size:222
Alignment explanation
Indices: 129110--129530 Score: 754
Period size: 222 Copynumber: 1.9 Consensus size: 222
129100 AGGTCTTATA
*
129110 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
129175 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
* * *
129240 CTTAGTTTCTAAAATCTCATTTGAAAGCATCCTGCACTGAAGGTCTTGTGGATGGCCCGAAGGTC
131 CTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAC
129305 TTACGCATCATGCTCGAAAGACTAACT
196 TTACGCATCATGCTCGAAAGACTAACT
*
129332 GATGACCCGAAGGACTTACAAATCAAGAAAGCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
129397 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTA-AAATTCAAGAAACCCCCTAAG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAA-TCAAGAAACCCCCGAAG
*
129461 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGA
130 GCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGA
129526 CTTAC
195 CTTAC
129531 AAATCAAGAA
Statistics
Matches: 190, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
221 3 0.02
222 187 0.98
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.24
Consensus pattern (222 bp):
GATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
CTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAC
TTACGCATCATGCTCGAAAGACTAACT
Found at i:130842 original size:132 final size:132
Alignment explanation
Indices: 130595--131105 Score: 781
Period size: 132 Copynumber: 3.9 Consensus size: 132
130585 AGGTGTTATG
* *
130595 GATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
130660 AACATCCTGCACTGAAGGTCTTATGGATTGCCCGAAGGACTTACAAATCATGATCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGAATCATGCTCGAAAGACTTA
130725 CT
131 CT
*
130727 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCTC-AAGGCTTAGTTTCTAAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCC-CGAAGGCTTAGTTTCTAAAATCTCATTTGA
* * * * *
130791 AAACATCCTGCACTGAAGGTCATACGGATGGCCCGGAGGACTTACGTATCATGCTCGAAAGATTT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGAATCATGCTCGAAAGACTT
130856 ACT
130 ACT
*
130859 AATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
130924 AGCATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTAA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGAATCATGCTCGAAAGACTTA
130989 CT
131 CT
* ** * *
130991 GATGGCCCGGAGGACTTACAAATCAAGAAATTCCCGAAGGGTTAGTTTCTAAAATCACATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
131056 AACATCTTTCATTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGAATCA
131106 AGAAACCCCC
Statistics
Matches: 343, Mismatches: 34, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
131 1 0.00
132 341 0.99
133 1 0.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.25
Consensus pattern (132 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGAATCATGCTCGAAAGACTTA
CT
Found at i:130877 original size:20 final size:22
Alignment explanation
Indices: 130818--130877 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 22
130808 GGTCATACGG
*
130818 ATGGCCCGGAGGACTTACGTATC
1 ATGGCCCGAAGGACTTACGTA-C
* * *
130841 AT-GCTCGAAAGATTTAC-TA-
1 ATGGCCCGAAGGACTTACGTAC
130860 ATGGCCCGAAGGACTTAC
1 ATGGCCCGAAGGACTTAC
130878 AAATCAAGAA
Statistics
Matches: 29, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
19 2 0.07
20 12 0.41
21 2 0.07
22 11 0.38
23 2 0.07
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.23
Consensus pattern (22 bp):
ATGGCCCGAAGGACTTACGTAC
Found at i:132137 original size:132 final size:132
Alignment explanation
Indices: 131890--135632 Score: 2789
Period size: 132 Copynumber: 27.9 Consensus size: 132
131880 AGGTGTTATG
* * * *
131890 GATGACCCGAAGGACTTACAAATCAAGATACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * *
131955 AACATCCTGTACTGAAGGTCTTATGGATTGCCCGAAGGACTTACAAATCATGCTCGAAAGTCTTT
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
132020 CT
131 CT
*
132022 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
132087 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGATTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
*
132152 TT
131 CT
* * * *
132154 GATGGCCCAGAGGACTTACAAATCAAGAAACTCCCGAAGACTAAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * *
132219 AACATCCTACACTGAAGGTCTTATGGATGGCAC-AGAGGACTTACGCATCATTCTTGAAAGACTT
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGA-AGGACTTACACATCATGCTCGAAAGACTT
*
132283 ATT
130 ACT
* *
132286 GATGGGCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAATTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
132351 AACATCATGCACTGAAGGTCTTATGGATGGCCCGAACGACTTACGCATCATGCTCGAAGGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
132416 CT
131 CT
* * *
132418 GATGGCCCAGAGGACTTACAAATCAAGAAACCTCCGAAGGCTTAGTTTCTAAAATCTCATTCGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * *
132483 AGCATCCTGCGCGGAAGGTCTTATGGATGGCCCGAAGGTCTTACCCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
*
132548 CC
131 CT
*
132550 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAATTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
132615 AGCATCCTGCACTGAAGGTCTTATGGATTGCCCGAAGGTCTTACCCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
132680 CT
131 CT
* * *
132682 GATGGCCCGGAGGACTAACAAATCAATAAACCCCCGAAGACTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
132747 AACATCCTGCACTGAAGGTCTTATGGATGGCCCCG-AGGACTTACGCATCATGCTCGAAAGACTT
66 AACATCCTGCACTGAAGGTCTTATGGATGG-CCCGAAGGACTTACACATCATGCTCGAAAGACTT
132811 ACT
130 ACT
* *
132814 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAATATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
132879 AACATCCTGCACTTAAGGTTTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
132944 CT
131 CT
* *
132946 AATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCAAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
133011 AGCATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTAA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
133076 CT
131 CT
133078 GAT-GCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGC-T-GTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * ** **
133140 AACATCCTGCACCGAAGGTCTTACAATCAAGA-AACCCG-AGGACTTACA-A--AT-CAAG-AA-
66 AACATCCTGCACTGAAGGTCTT---AT--GGATGGCCCGAAGGACTTACACATCATGCTCGAAAG
** *
133197 AC-CCCC
126 ACTTACT
* ** * * * **
133203 GAAGG--CTTA-G-TTTCAAAAATCTCATTTGAAAGCATCCTGCACTGAAGGTCTTATGGATGGC
1 GATGGCCCGGAGGACTT-ACAAA--TCA--AGAAA-C--CC--C-C-GAAGG-CTTA--G-TTTC
*** ** ** * * * * * *
133264 CCGAAGGTC--TT--ACGCATCATGCTC-GAAAGACTAACT-GATGGCCCGGAGGACTTACA-A-
50 TAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTA-TGGATGGCCCGAAGGACTTACACAT
** ** *
133321 -AT-CAAG-AA-AC-CCCC
114 CATGCTCGAAAGACTTACT
* * * ** * *
133335 GAAGG-GC-TA-GTTTCTA-AAATCTCATTTGAAAACATCCTGCACCGAAGGTCTTATGGATGGC
1 GATGGCCCGGAGGACT-TACAAA--TCA----AGAA-A-CC--C-CCGAAGG-CTTA--G-T--T
* * * ** * * ** *** ** *
133396 CCGAAGGA-CTTACAAATCAAGAA-A-CC--C-CCGAAGG-CTTA--G-TTTCTTAAATCTCATT
48 TCTAA-AATC-T-CATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAA--GGACT
* * * * *
133451 TGAAAACATCCTGCACTGAAGGTCTTA-T
107 T--ACACATCATGCTC-GAAAGACTTACT
* * *
133479 GGATGGCCCGAATGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTG
1 -GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATCTCATTTG
* *
133544 AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA--AT---AA-AC-
64 AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACT
** *
133602 CCCC
129 TACT
* ** ** * * * **
133606 GAAGG--CTTAGTTTCTTA-AATCTCATTTAAAAACATCCTGCACTGAAAGTCTTATGGATGGCC
1 GATGGCCCGGAG-GACTTACAA-ATCA---AGAAAC--CC--C-C-G-AAGGCTTA--G-T--TT
* * ** * * ** *** ** *
133668 CGAAGGA-CTTACAAATCAAGAA-A-CC--C-CCGAAGG-CTTA--G-TTTCTTAAAATTTCATT
49 CTAA-AATC-T-CATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGC-CCGAA--GGACT
* * * *
133723 TGAAAACATCATGCACTGAAGGTCTTA-T
107 T--ACACATCATGCTC-GAAAGACTTACT
* * *
133751 GGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTAGTTTCTTAAATCTCATTTGA
1 -GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
* * * * * *
133816 AAACATCCTACACTGAAGGTCTTATGGATGGCTCGAAGGACTTACAAATAAAGAAACCTCGAAGG
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATG----CTCGAAAG
* *
133881 TTTAGTTTCTT
126 ---ACTTAC-T
* ** ** * ** * * *** *** *
133892 AAATCTCATTTGAAAATATCTTGCACTAAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAA
1 -GATGGC--CCG-GAGGA-CTT--AC-AAA--TC-AAGA-AACCCCCGAAGG-CTTA-GTTTCTA
* ** ** * ** **** * ** * * * * **
133957 GAAAGC-C--CCGAAGGCTTAGTTTTTTAAATCTCATT-TGAAAATCCTGCACGAAGGTCTTATG
52 -AAATCTCATTTGAAAACATCCTGCACTGAAGGTC-TTATG--GAT--GGCCCGAAGGACTTACA
* * * *
134018 GAT--GGCCCGAAGGACTTACAAAT
111 CATCATGCTCGAAAGACTTAC---T
*** * *
134041 CAAGAAACCCCCGAAGG-CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTT
1 ---G-ATGGCCCGGAGGACTTA----C--AAA--TCA--AG-AAAC--CC--C-C-GAAGG-CTT
** * * ** * * ** **
134105 ATGGATGGCCCGAAGGA-CTTACAAATGAAGAA-A-CC--C-CCGAA-ATCTTA--G-TTTCTTA
44 A--G-T--TTCTAA-AATC-T-CATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGC-CC
* ** * * * * * * **
134160 AAATTTCATTTGAAAATATCCTGCACGGAAGGTGTTA-T
99 GAA--GGACTT--ACACATCATGCTC-GAAAGACTTACT
* * *
134198 GGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGA
1 -GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
* * * *
134263 AAATATCCTGCAATGAAGGTCTTATGGATTGCCCGAAGGACTTACAAATCATGCTCGAAAGACTT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTT
134328 ACT
130 ACT
**
134331 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCTAAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
134396 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
*
134461 TT
131 CT
** * * * *
134463 GATGGCCCACAGTACTTACAAATCAAGAAACACCCGAAGACTAAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
134528 AACATCCTGCTCTGAAGGTCTTACGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
*
134593 TT
131 CT
134595 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
134660 AATATCATGCACTGAAGGTCTTATGGATGGCCCTAAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
*
134725 CA
131 CT
* *
134727 GATGGCCCGGAGGACTTACAAATCAAGAAACCTCCGAAGGCTTAGTTTCTAAAATCTCATTCGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
134792 AGCATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGTCTTAC-CATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
134856 CT
131 CT
* *
134858 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAATTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
134923 AGCATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGTCTTACCCATCCTGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
134988 CT
131 CT
** *
134990 GATGGCCCGGAGGACAAACAAATCAAGAAACCCCCGAAGACTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
135055 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
135120 CT
131 CT
** * *
135122 GATGGCCCATAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTATAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
135187 AACATCATGCACTGAAAGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGAGTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
*
135252 TT
131 CT
** *
135254 GATGGCCCGGATAACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
135319 AACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
135384 CT
131 CT
* * * * *
135386 GATGGCCCGGAGGGCTTACAAATCAAGAAATCCCCAAAGGATTAGTTTCTAAAATCTGATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* ** * *
135451 AGCATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGTGTTTCCCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
135516 CT
131 CT
* *
135518 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGACTTAATTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
135583 AACATCCTCCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCA
135633 AGAAACCCCC
Statistics
Matches: 2917, Mismatches: 487, Indels: 414
0.76 0.13 0.11
Matches are distributed among these distances:
122 2 0.00
123 5 0.00
124 6 0.00
125 13 0.00
126 7 0.00
127 7 0.00
128 9 0.00
129 48 0.02
130 26 0.01
131 186 0.06
132 2114 0.72
133 43 0.01
134 41 0.01
135 43 0.01
136 34 0.01
137 41 0.01
138 28 0.01
139 8 0.00
140 18 0.01
141 13 0.00
142 10 0.00
143 2 0.00
144 14 0.00
145 10 0.00
146 8 0.00
147 22 0.01
148 13 0.00
149 7 0.00
150 16 0.01
151 5 0.00
152 26 0.01
153 8 0.00
154 17 0.01
155 11 0.00
156 17 0.01
157 10 0.00
158 3 0.00
159 2 0.00
160 7 0.00
161 13 0.00
163 1 0.00
165 3 0.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (132 bp):
GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
CT
Found at i:132192 original size:264 final size:264
Alignment explanation
Indices: 131900--137293 Score: 3274
Period size: 264 Copynumber: 19.9 Consensus size: 264
131890 GATGACCCGA
* * *
131900 AGGACTTACAAATCAAGATACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGT
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
* ** * *
131965 ACTGAAGGTCTTATGGATTGCCCGAAGGACTTACAAATCATGCTCGAAAGTCTTTCTGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
*
132030 GGAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
131 GGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
* * *
132095 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGATTTATTGATGGC
196 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGC
132160 CCAG
261 CCAG
* * * *
132164 AGGACTTACAAATCAAGAAACTCCCGAAGACTAAGTTTCTAAAATCTCATTTGAAAACATCCTAC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
* * * * *
132229 ACTGAAGGTCTTATGGATGGCAC-AGAGGACTTACGCATCATTCTTGAAAGACTTATTGATGGGC
66 ACTGAAGGTCTTATGGATGGCCCGA-AGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCC
* *
132293 CGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAATTTCTAAAATCTCATTTGAAAACATCA
130 CGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCC
* *
132358 TGCACTGAAGGTCTTATGGATGGCCCGAACGACTTACGCATCATGCTCGAAGGACTTACTGATGG
195 TGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGG
132423 CCCAG
260 CCCAG
* * *
132428 AGGACTTACAAATCAAGAAACCTCCGAAGGCTTAGTTTCTAAAATCTCATTCGAAAGCATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
* * * * *
132493 GCGGAAGGTCTTATGGATGGCCCGAAGGTCTTACCCATCATGCTCGAAAGACTTACCGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
* *
132558 GGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAATTTCTAAAATCTCATTTGAAAGCATCCT
131 GGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
* * *
132623 GCACTGAAGGTCTTATGGATTGCCCGAAGGTCTTACCCATCATGCTCGAAAGACTTACTGATGGC
196 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGC
*
132688 CCGG
261 CCAG
* * *
132692 AGGACTAACAAATCAATAAACCCCCGAAGACTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
132757 ACTGAAGGTCTTATGGATGGCCCCG-AGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCC
66 ACTGAAGGTCTTATGGATGG-CCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCC
* *
132821 CGGAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAATATCTCATTTGAAAACATCC
130 CGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCC
* * * *
132886 TGCACTTAAGGTTTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTACTAATGG
195 TGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGG
*
132951 CCCGG
260 CCCAG
* *
132956 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCAAAAATCTCATTTGAAAGCATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
* *
133021 ACTGAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTAACTGAT-GCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
133085 GGAGGACTTACAAATCAAGAAACCCCCGAAGGC-T-GTTTCTAAAATCTCATTTGAAAACATCCT
131 GGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
* * ** ** * * *
133148 GCACCGAAGGTCTTACAATCAAGA-AACCCG-AGGACTTACAAATCAAGAAACCCCCG-AAGGCT
196 GCACTGAAGGTCTT---AT--GGATGGCCCGAAGGACTTACGCATCATG-----CTCGAAAGACT
**
133210 TA--G-T--TTCA-
251 TACTGATGGCCCAG
* * ** * * * * ** *** ** *
133218 A-AAATCT-CATTTGAAAGCATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGTC--TT--AC
1 AGGACT-TACAAAT-CAAGAAACC--C-CCGAAGG-CTTA--G-TTTCTAAAATCTCATTTGAAA
* * * * * * * * ** **
133277 GCATCATGCTC-GAAAGACTAACT-GATGGCCCGGAGGACTTA--CA-AAT-CAAG-AA-AC-CC
57 ACATCCTGCACTGAAGGTCTTA-TGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
* * * * ** *
133333 CCGAAGG-GC-TA-GTTTCTA-AAATCTCATTTGAAAACATCCTGCACCGAAGGTCTTATGGATG
121 CTGATGGCCCGGAGGACT-TACAAA--TCA----AGAA-A-CC--C-CCGAAGG-CTTA--G-T-
** * * ** * * ** *** **
133394 GCCCGAAGGA-CTTACAAATCAAGAA-A-CC--C-CCGAAGG-CTTA--G-TTTCTTAAATCTCA
169 -TTCTAA-AATC-T-CATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAA--GGA
* ** * * * *
133449 TTTGAAAACATCCTGCACTGAAGGTCTTA-TGGATGGCCC-G
227 CTT--ACGCATCATGCTC-GAAAGACTTACT-GATGGCCCAG
* *
133489 AATGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCT
1 -AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATCTCATTTGAAAACATCCT
** * ** * *
133554 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA--AT---AA-AC-CCCCGAAGG-
64 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGC
** ** * * * ** * *
133611 -CTTAGTTTCTTA-AATCTCATTTAAAAACATCCTGCACTGAAAGTCTTATGGATGGCCCGAAGG
129 CCGGAG-GACTTACAA-ATCA---AGAAAC--CC--C-C-G-AAGGCTTA--G-T--TTCTAA-A
** * * ** *** ** * **
133674 A-CTTACAAATCAAGAA-A-CC--C-CCGAAGG-CTTA--G-TTTCTTAAAATTTCATTTGAAAA
176 ATC-T-CATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGC-CCGAA--GGACTT--ACG
* * *
133729 CATCATGCACTGAAGGTCTTA-TGGATGGCCC-G
233 CATCATGCTC-GAAAGACTTACT-GATGGCCCAG
* * *
133761 AAGGACTTACAAATCAAGAAACCCCCGAAGGATTAGTTTCTTAAATCTCATTTGAAAACATCCTA
1 -AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTG
* ** * * * * *
133826 CACTGAAGGTCTTATGGATGGCTCGAAGGACTTACAAATAAAGAAACCTCGAAGGTTTAGTTTCT
65 CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATG----CTCGAAAG---ACTTAC-
* ** ** * ** ***
133891 TAAATCTCATTTGAAAATATCTTGCACTAAAGGTCTTATAG-ATGGCCCGAAGGACTTA----C-
122 T-GATGGC--CCG-GAGGA-CTT--AC-AAA--TC--A-AGAAACCCCCGAAGG-CTTAGTTTCT
* * ****** ** * **
133950 -AAA--TCA----AGAA-AGCC--C-C-GAAGG-CTTA--G-TTTTTTAAATCTCATTTGA-AAA
173 AAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAA--GGACTT-ACGCA
* * * * **
133998 TCCTGCACGAAGGTCTTATGGATGGCCCGA-
235 TCATGCTCGAAAGACTTACTGATGGCCC-AG
*
134028 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
** * * * *
134093 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATGAAGAAACCCCCGAAA-TCTTA--G-T
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATG-----CTCGAAAGACTTACTGAT
** ** * * * ** * * * ** * *
134154 --TTCTTA-AAATTTCATTTGAA-AATATCCTGCACGGAAGGTGTTATGGATGACCCGAAGGA-C
126 GGCCCGGAGGACTTACAAATCAAGAA-A-CC--C-CCGAAGG-CTTA--G-T--TTCTAA-AATC
** * * ** *** ** * ***
134214 TTACAAATCAAGAA-A-CC--C-CCGAAGG-CTTA--G-TTTCTTAAATCTCATTTGAAAATATC
179 -T-CATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAA--GGACTT--ACGCATC
* * * *
134270 CTGCAAT-GAAGGTCTTA-TGGATTGCCC-G
237 ATGC--TCGAAAGACTTACT-GATGGCCCAG
* * *** *
134298 AAGGACTTACAAATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACC
1 -AGGACTTACAAATCA----AG-AA-AC---C------CCCGAAGG-CTTA-GTTTCTA-AAA--
* *
134363 CCTAAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCC
45 --T-----CTCA-TTT-GAAAA---C------A----TCCTGCACTGAAGGTCTTATGGATGGCC
* * ** *
134428 CGAAGGACTTACACATCATGCTCGAAAGACTTATTGATGGCCCACAGTACTTACAAATCAAGAAA
88 CGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAA
* * * * *
134493 CACCCGAAGACTAAGTTTCTAAAATCTCATTTGAAAACATCCTGCTCTGAAGGTCTTACGGATGG
153 CCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGG
* *
134558 CCCGAAGGACTTACGCATCATGCTCGAAAGACTTATTGATGGCCCGG
218 CCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCAG
* *
134605 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAATATCATGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
* *
134670 ACTGAAGGTCTTATGGATGGCCCTAAGGACTTACGCATCATGCTCGAAAGACTTACAGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
* * *
134735 GGAGGACTTACAAATCAAGAAACCTCCGAAGGCTTAGTTTCTAAAATCTCATTCGAAAGCATCCT
131 GGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
*
134800 GCACTGAAGGTCTTATGGATGGCCCGAAGGTCTTAC-CATCATGCTCGAAAGACTTACTGATGGC
196 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGC
134864 CCAG
261 CCAG
* *
134868 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAATTTCTAAAATCTCATTTGAAAGCATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
* * *
134933 ACTGAAGGTCTTATGGATGGCCCGAAGGTCTTACCCATCCTGCTCGAAAGACTTACTGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
** *
134998 GGAGGACAAACAAATCAAGAAACCCCCGAAGACTTAGTTTCTAAAATCTCATTTGAAAACATCCT
131 GGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
*
135063 GCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGC
196 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGC
*
135128 CCAT
261 CCAG
* * *
135132 AGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTATAAAATCTCATTTGAAAACATCATGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
* * *
135197 ACTGAAAGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGAGTTATTGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
** * *
135262 GGATAACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCAT
131 GGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
135327 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGC
196 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGC
*
135392 CCGG
261 CCAG
* * * * * *
135396 AGGGCTTACAAATCAAGAAATCCCCAAAGGATTAGTTTCTAAAATCTGATTTGAAAGCATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
** * *
135461 ACTGAAGGTCTTATGGATGGCCCGAAGGTGTTTCCCATCATGCTCGAAAGACTTACTGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
* *
135526 GGAGGACTTACAAATCAAGAAACCCCCGAAGACTTAATTTCTAAAATCTCATTTGAAAACATCCT
131 GGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
* ** * * *
135591 CCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAATG-CTTA--G
196 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATG-----CTCGAAAGACTTACTG
** ** *
135653 -TTTCTAAA
256 ATGGCCCAG
* * * ** ** * * * ** *** ** * **
135661 ATGTCATTTA-AAAAC-ATCATGCGCTGAACGACTTATGGATGGCCCGAA--GGACTT--ACGCA
1 A-G-GACTTACAAATCAAGAAACCCCCGAA-GGCTTA--G-TTTCTAAAATCTCATTTGAAAACA
* * * * * ** * * *
135720 TCATGCTC-GAAAGACTTACT-GATGG-CCTAGAGGACTTACAAATCAAGAAACCCCCG-AAGGC
60 TCCTGCACTGAAGGTCTTA-TGGATGGCCCGA-AGGACTTACGCATCATG-----CTCGAAAGAC
* * ** *** ** * * * *** *
135781 TTTGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGGAGGACT
118 ----TTACT--GATGGC-CCGGAGGAC-T--T--AC--AA-ATC--AAGAAACCCCCGAAGG-CT
* * ** * ** * *
135846 TACGCATCATGCTCAAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAG
165 TA-G--T--T--TCTAAA-A--T-CTCAT----TTGA--A---A-ACATCCTG----CACTGAAG
** *** ** * ** * * *
135911 G-CTTA--G-TTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTA-TGCATGGCCC-
205 GTCTTATGGATGGCCCGAA--GGACTT--ACGCATCATGCTC-GAAAGACTTACTG-ATGGCCCA
135970 G
264 G
* * ** * *** *
135971 AAGATCTTACCCATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACA
1 AGGA-CTTA--CA--A--ATC--AAGA---A---A-CCCCCGAAGG-CTTA-GTTTC--TAAA-A
* * * * *
136036 CCCGAAGGGTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGCTCTTATGGATAGCC
45 -TC------TCA-TTT-GAAAA---C------A----TCCTGCACTGAAGGTCTTATGGATGGCC
* * * * * *
136101 TGGATGACTTACGCATCATGCTGGAAAGACTTACTAATGGCCCGGAGGATTTACAAATCAAGAAA
88 CGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAA
* * * *
136166 CCCCCGAAGGTTTAATTTCTAAAATCTCATTTGAAAACATCCTACACTGAAGTTCTTATGGATGG
153 CCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGG
* *
136231 CCCGAAGGACTTATGCATCATGCTCGAAATACTTACTGATGGCCCAG
218 CCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCAG
* * *
136278 AGAACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTTAAAATCTCATTTGAAAACATCATGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
*
136343 ACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
** *
136408 GGAGGACTTACAAATCAAGAAACCTTCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAGCATCCT
131 GGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
* * *
136473 GCACTGAAGGTCTTATAGATGACCCGAAGGTCTTACGCATCATGCTCGAAAGACTTACTGATGGC
196 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGC
136538 CCAG
261 CCAG
*
136542 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACTTCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
136607 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
*
136672 AGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAA--TC---TGAAAACATCCT
131 GGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
* * * *
136732 GCTCTCAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTATTGATGGC
196 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGC
*
136797 CCGG
261 CCAG
*
136801 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAGCATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
* ** * *
136866 ACTGAAGTTCTTATGGATGGCCTAAAGGTCTTACGCATCATGCTCGAAATACTTACTGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
136931 GGAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
131 GGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
* * *
136995 GCACTGAAGGTCTTATGGATGACCCGAAAGTCTTACGCATCATGCTCGAAAGACTTACTGATGGC
196 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGC
137060 CCAG
261 CCAG
*
137064 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAGCATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
* * *
137129 ACTGAAGGTCTTATGGATGGCCTGAAGGTCTTACGCATCATGCTCGAAATACTTACTGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
*
137194 GGAGGACTTATAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
131 GGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
*
137258 GCACTGAAGGTCTTATGGATGGCTCGAAGGACTTAC
196 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
137294 AAATCAAGAA
Statistics
Matches: 4120, Mismatches: 656, Indels: 709
0.75 0.12 0.13
Matches are distributed among these distances:
243 2 0.00
244 1 0.00
246 1 0.00
247 1 0.00
248 10 0.00
249 1 0.00
251 2 0.00
252 1 0.00
253 1 0.00
254 1 0.00
255 5 0.00
256 3 0.00
257 8 0.00
258 27 0.01
259 219 0.05
260 5 0.00
261 49 0.01
262 15 0.00
263 591 0.14
264 1887 0.46
265 52 0.01
266 155 0.04
267 35 0.01
268 60 0.01
269 49 0.01
270 44 0.01
271 201 0.05
272 112 0.03
273 9 0.00
274 9 0.00
275 11 0.00
276 10 0.00
277 13 0.00
278 8 0.00
279 6 0.00
280 4 0.00
281 1 0.00
282 2 0.00
283 2 0.00
284 2 0.00
285 11 0.00
286 12 0.00
287 8 0.00
288 5 0.00
289 11 0.00
290 13 0.00
291 17 0.00
292 6 0.00
293 6 0.00
294 3 0.00
295 1 0.00
296 4 0.00
297 9 0.00
298 7 0.00
299 4 0.00
300 8 0.00
301 4 0.00
302 4 0.00
303 8 0.00
304 6 0.00
305 5 0.00
306 53 0.01
307 48 0.01
308 21 0.01
309 18 0.00
310 9 0.00
311 33 0.01
312 4 0.00
313 45 0.01
314 4 0.00
315 10 0.00
316 3 0.00
317 2 0.00
319 1 0.00
321 4 0.00
322 2 0.00
324 2 0.00
325 6 0.00
326 9 0.00
327 2 0.00
329 1 0.00
332 3 0.00
333 10 0.00
335 2 0.00
336 3 0.00
337 2 0.00
338 2 0.00
340 2 0.00
342 1 0.00
343 4 0.00
344 4 0.00
346 4 0.00
349 3 0.00
350 4 0.00
353 7 0.00
354 24 0.01
355 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (264 bp):
AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
GGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGC
CCAG
Found at i:133233 original size:222 final size:221
Alignment explanation
Indices: 132955--133490 Score: 936
Period size: 222 Copynumber: 2.4 Consensus size: 221
132945 TAATGGCCCG
132955 GAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCAAAAATCTCATTTGAAAGCATCCTG
1 GAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCAAAAATCTCATTTGAAAGCATCCTG
133020 CACTGAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTAACTGAT-GCC
66 CACTGAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTAACTGATGGCC
133084 CGGAGGACTTACAAATCAAGAAACCCCCGAA-GGCT-GTTTCTAAAATCTCATTTGAAAACATCC
131 CGGAGGACTTACAAATCAAGAAACCCCCGAAGGGCTAGTTTCTAAAATCTCATTTGAAAACATCC
133147 TGCACCGAAGGTCTTACAATCAAGA-AACCC
196 TGCACCGAAGGTCTT---AT--AGATAACCC
133177 GAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCAAAAATCTCATTTGAAAGCATCCTG
1 GAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCAAAAATCTCATTTGAAAGCATCCTG
133242 CACTGAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTAACTGATGGCC
66 CACTGAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTAACTGATGGCC
133307 CGGAGGACTTACAAATCAAGAAACCCCCGAAGGGCTAGTTTCTAAAATCTCATTTGAAAACATCC
131 CGGAGGACTTACAAATCAAGAAACCCCCGAAGGGCTAGTTTCTAAAATCTCATTTGAAAACATCC
* **
133372 TGCACCGAAGGTCTTATGGATGGCCC
196 TGCACCGAAGGTCTTATAGATAACCC
** *
133398 GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCT
1 G-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCAAAAATCTCATTTGAAAGCATCCT
133463 GCACTGAAGGTCTTATGGATGGCCCGAA
65 GCACTGAAGGTCTTATGGATGGCCCGAA
133491 TGACTTACAA
Statistics
Matches: 303, Mismatches: 6, Indels: 10
0.95 0.02 0.03
Matches are distributed among these distances:
220 2 0.01
221 4 0.01
222 216 0.71
223 34 0.11
224 4 0.01
225 43 0.14
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (221 bp):
GAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCAAAAATCTCATTTGAAAGCATCCTG
CACTGAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTAACTGATGGCC
CGGAGGACTTACAAATCAAGAAACCCCCGAAGGGCTAGTTTCTAAAATCTCATTTGAAAACATCC
TGCACCGAAGGTCTTATAGATAACCC
Found at i:133250 original size:93 final size:91
Alignment explanation
Indices: 133086--133255 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 91
133076 CTGATGCCCG
*
133086 GAGGACTTACAAATCAAGAAACCCCCGAAGGCTGTTTCTAAAATCTCATTTGAAAACATCCTGCA
1 GAGGACTTACAAATCAAGAAACCCCCGAAGGCTGTTTCAAAAATCTCATTTGAAAACATCCTGCA
133151 CCGAAGGTCTTACAATCAAGAAACCC
66 CCGAAGGTCTTACAATCAAGAAACCC
*
133177 GAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCAAAAATCTCATTTGAAAGCATCCTG
1 GAGGACTTACAAATCAAGAAACCCCCGAAGGC-T-GTTTCAAAAATCTCATTTGAAAACATCCTG
*
133242 CACTGAAGGTCTTA
64 CACCGAAGGTCTTA
133256 TGGATGGCCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 32 0.43
92 1 0.01
93 41 0.55
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.22
Consensus pattern (91 bp):
GAGGACTTACAAATCAAGAAACCCCCGAAGGCTGTTTCAAAAATCTCATTTGAAAACATCCTGCA
CCGAAGGTCTTACAATCAAGAAACCC
Found at i:133453 original size:90 final size:90
Alignment explanation
Indices: 133300--134313 Score: 1660
Period size: 90 Copynumber: 11.3 Consensus size: 90
133290 AAGACTAACT
* *
133300 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGGC-TAGTTTCTAAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAA-GGCTTAGTTTCTTAAATCTCATTTGA
*
133364 AAACATCCTGCACCGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
133390 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
133455 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
133480 GATGGCCCGAATGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
133545 AAACATCCTGCACTGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* *
133571 GATGGCCCGAAGGACTTACAAATCAATAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
133636 AACATCCTGCACTGAAAGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
133661 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
*
133726 AAACATCATGCACTGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
*
133752 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
133817 AACATCCTACACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * * *
133842 GATGGCTCGAAGGACTTACAAATAAAGAAA-CCTCGAAGGTTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * *
133906 AATATCTTGCACTAAAGGTCTTATA
66 AACATCCTGCACTGAAGGTCTTATG
* *
133931 GATGGCCCGAAGGACTTACAAATCAAGAAAGCCCCGAAGGCTTAGTTTTTTAAATCTCATTTG-A
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
133995 AA-ATCCTGCAC-GAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
134018 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
134083 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* ** *
134108 GATGGCCCGAAGGACTTACAAATGAAGAAACCCCCGAAATCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* * *
134173 AAATATCCTGCACGGAAGGTGTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
*
134199 GATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
134264 AATATCCTGCAATGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
134289 GATTGCCCGAAGGACTTACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
134314 TGCTCGAAAG
Statistics
Matches: 861, Mismatches: 55, Indels: 16
0.92 0.06 0.02
Matches are distributed among these distances:
87 71 0.08
88 11 0.01
89 95 0.11
90 430 0.50
91 254 0.30
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:133604 original size:181 final size:180
Alignment explanation
Indices: 133300--134313 Score: 1660
Period size: 181 Copynumber: 5.6 Consensus size: 180
133290 AAGACTAACT
* *
133300 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGGC-TAGTTTCTAAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAA-GGCTTAGTTTCTTAAATCTCATTTGA
*
133364 AAACATCCTGCACCGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
133429 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
130 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
* *
133480 GATGGCCCGAATGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
*
133545 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAATAAACCCCCGAAG
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* *
133610 GCTTAGTTTCTTAAATCTCATTTAAAAACATCCTGCACTGAAAGTCTTATG
130 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
*
133661 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
*
133726 AAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* *
133791 GATTAGTTTCTTAAATCTCATTTGAAAACATCCTACACTGAAGGTCTTATG
130 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
* * * *
133842 GATGGCTCGAAGGACTTACAAATAAAGAAA-CCTCGAAGGTTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * * *
133906 AATATCTTGCACTAAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAAGCCCCGAAGG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
*
133971 CTTAGTTTTTTAAATCTCATTTG-AAA-ATCCTGCAC-GAAGGTCTTATG
131 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
134018 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* **
134083 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATGAAGAAACCCCCGAAAT
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
* * * *
134148 CTTAGTTTCTTAAAATTTCATTTGAAAATATCCTGCACGGAAGGTGTTATG
131 CTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
*
134199 GATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * *
134264 AATATCCTGCAATGAAGGTCTTATGGATTGCCCGAAGGACTTACAAATCA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
134314 TGCTCGAAAG
Statistics
Matches: 779, Mismatches: 48, Indels: 13
0.93 0.06 0.02
Matches are distributed among these distances:
176 40 0.05
177 107 0.14
178 14 0.02
179 100 0.13
180 71 0.09
181 447 0.57
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (180 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
Found at i:134570 original size:20 final size:20
Alignment explanation
Indices: 134541--134613 Score: 56
Period size: 20 Copynumber: 3.5 Consensus size: 20
134531 ATCCTGCTCT
*
134541 GAAGGTCTTACGGATGGCCC
1 GAAGGACTTACGGATGGCCC
* * *
134561 GAAGGACTTACGCATCATGCTC
1 GAAGGACTTACGGAT--GGCCC
* **
134583 GAAAGACTTATTGATGGCCC
1 GAAGGACTTACGGATGGCCC
*
134603 GGAGGACTTAC
1 GAAGGACTTAC
134614 AAATCAAGAA
Statistics
Matches: 38, Mismatches: 13, Indels: 4
0.69 0.24 0.07
Matches are distributed among these distances:
20 24 0.63
22 14 0.37
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (20 bp):
GAAGGACTTACGGATGGCCC
Found at i:135271 original size:42 final size:43
Alignment explanation
Indices: 135189--135272 Score: 98
Period size: 42 Copynumber: 2.0 Consensus size: 43
135179 CATTTGAAAA
* *
135189 CATCATGCACTGAAAGTCTTATGGATGGCCCGAAGGACTTACG
1 CATCATGCACTGAAAGACTTATGGATGGCCCGAAGAACTTACG
* * * * *
135232 CATCATGCTC-GAAAGAGTTATTGATGGCCCGGATAACTTAC
1 CATCATGCACTGAAAGACTTATGGATGGCCCGAAGAACTTAC
135273 AAATCAAGAA
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 25 0.74
43 9 0.26
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25
Consensus pattern (43 bp):
CATCATGCACTGAAAGACTTATGGATGGCCCGAAGAACTTACG
Found at i:135675 original size:90 final size:90
Alignment explanation
Indices: 135510--135716 Score: 301
Period size: 90 Copynumber: 2.3 Consensus size: 90
135500 ATGCTCGAAA
*
135510 GACTTACT-GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGACTTAATTTCTAAAATC
1 GACTTA-TGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGACTTAATTTCTAAAATC
* * *
135574 TCATTTGAAAACATCCTCCACTGAAG
65 TCATTTAAAAACATCATCCACTGAAC
* * *
135600 GTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAATG-CTTAGTTTCTAAAATG
1 GACTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAA-GACTTAATTTCTAAAATC
* *
135664 TCATTTAAAAACATCATGCGCTGAAC
65 TCATTTAAAAACATCATCCACTGAAC
135690 GACTTATGGATGGCCCGAAGGACTTAC
1 GACTTATGGATGGCCCGAAGGACTTAC
135717 GCATCATGCT
Statistics
Matches: 105, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
89 1 0.01
90 103 0.98
91 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (90 bp):
GACTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGACTTAATTTCTAAAATCT
CATTTAAAAACATCATCCACTGAAC
Found at i:135772 original size:222 final size:222
Alignment explanation
Indices: 135386--135848 Score: 710
Period size: 222 Copynumber: 2.1 Consensus size: 222
135376 AAGACTTACT
* * * *
135386 GATGGCCCGGAGGGCTTACAAATCAAGAAATCCCCAAAGGATTAGTTTCTAAAATCTGATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCAAAGGATTAGTTTCTAAAATCTCATTTAAA
* * * * ** *
135451 AGCATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGTGTTTCCCATCATGCTCGAAAGACTTA
66 AACATCATGCACTGAACGACTTATGGATGGCCCGAAGGACTTACCCATCATGCTCGAAAGACTTA
*
135516 CTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGACTTAATTTCTAAAATCTCATTTG
131 CTGATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGACTTAATTTCTAAAATCTCATTTG
135581 AAAACATCCTCCACTGAAGGTCTTATG
196 AAAACATCCTCCACTGAAGGTCTTATG
* * * * *
135608 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAATGCTTAGTTTCTAAAATGTCATTTAAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCAAAGGATTAGTTTCTAAAATCTCATTTAAA
* *
135673 AACATCATGCGCTGAACGACTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCATGCACTGAACGACTTATGGATGGCCCGAAGGACTTACCCATCATGCTCGAAAGACTTA
* * **
135738 CTGATGGCCTAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTTGTTTCTAAAATCTCATTTG
131 CTGATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGACTTAATTTCTAAAATCTCATTTG
*
135803 AAAACATCCTGCACTGAAGGTCTTATG
196 AAAACATCCTCCACTGAAGGTCTTATG
135830 GATGGCCCGGAGGACTTAC
1 GATGGCCCGGAGGACTTAC
135849 GCATCATGCT
Statistics
Matches: 216, Mismatches: 25, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
222 216 1.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (222 bp):
GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCAAAGGATTAGTTTCTAAAATCTCATTTAAA
AACATCATGCACTGAACGACTTATGGATGGCCCGAAGGACTTACCCATCATGCTCGAAAGACTTA
CTGATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGACTTAATTTCTAAAATCTCATTTG
AAAACATCCTCCACTGAAGGTCTTATG
Found at i:135845 original size:132 final size:132
Alignment explanation
Indices: 135608--137293 Score: 2713
Period size: 132 Copynumber: 12.8 Consensus size: 132
135598 AGGTCTTATG
* * * *
135608 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAATGCTTAGTTTCTAAAATGTCATTTAAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
135673 AACATCATGCGCTGAACGACTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
135738 CT
131 CT
** *
135740 GATGGCCTAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTTGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
135805 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCAAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
135870 CT
131 CT
135872 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
135937 AACATCCTGCACTGAAAGTCTTATGCATGGCCCGAA-GATCTTACCCATCATGCTCGAAAGACTT
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGA-CTTACGCATCATGCTCGAAAGACTT
136001 ACT
130 ACT
* *
136004 GATGGCCCGGAGGACTTACAAATCAAGAAACACCCGAAGGGTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * * *
136069 AACATCCTGCACTGAAGCTCTTATGGATAGCCTGGATGACTTACGCATCATGCTGGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
136134 CT
131 CT
* * * *
136136 AATGGCCCGGAGGATTTACAAATCAAGAAACCCCCGAAGGTTTAATTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
136201 AACATCCTACACTGAAGTTCTTATGGATGGCCCGAAGGACTTATGCATCATGCTCGAAATACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
136266 CT
131 CT
* * *
136268 GATGGCCCAGAGAACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
136333 AACATCATGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
136398 CT
131 CT
**
136400 GATGGCCCGGAGGACTTACAAATCAAGAAACCTTCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
136465 AGCATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGTCTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
136530 CT
131 CT
*
136532 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
136597 AACTTCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
136662 CT
131 CT
*
136664 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAA--TC---TGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
136724 AACATCCTGCTCTCAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
*
136789 TT
131 CT
136791 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * ** * *
136856 AGCATCCTGCACTGAAGTTCTTATGGATGGCCTAAAGGTCTTACGCATCATGCTCGAAATACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
136921 CT
131 CT
136923 GATGGCCCGGAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
136987 AACATCCTGCACTGAAGGTCTTATGGATGACCCGAAAGTCTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
137052 CT
131 CT
*
137054 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
137119 AGCATCCTGCACTGAAGGTCTTATGGATGGCCTGAAGGTCTTACGCATCATGCTCGAAATACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
137184 CT
131 CT
*
137186 GATGGCCCGGAGGACTTATAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
137250 AACATCCTGCACTGAAGGTCTTATGGATGGCTCGAAGGACTTAC
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
137294 AAATCAAGAA
Statistics
Matches: 1434, Mismatches: 112, Indels: 17
0.92 0.07 0.01
Matches are distributed among these distances:
127 119 0.08
129 2 0.00
130 2 0.00
131 199 0.14
132 1110 0.77
133 2 0.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (132 bp):
GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
CT
Found at i:136383 original size:43 final size:42
Alignment explanation
Indices: 136335--136418 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 42
136325 CATTTGAAAA
* *
136335 CATCATGCACTGAAGGTCTTA-TGGATGGCCCGGAGGACTTACG
1 CATCATGCAC-GAAAGACTTACT-GATGGCCCGGAGGACTTACG
*
136378 CATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTAC
1 CATCATGCACGAAAGACTTACTGATGGCCCGGAGGACTTAC
136419 AAATCAAGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
42 27 0.73
43 10 0.27
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (42 bp):
CATCATGCACGAAAGACTTACTGATGGCCCGGAGGACTTACG
Found at i:137469 original size:91 final size:90
Alignment explanation
Indices: 137186--137551 Score: 626
Period size: 90 Copynumber: 4.1 Consensus size: 90
137176 AATACTTACT
* * *
137186 GATGGCCCGGAGGACTTATAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
137250 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * *
137275 GATGGCTCGAAGGACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTTAAATCTTATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
137340 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
137365 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
137430 AAACATCCTGCACTGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
*
137456 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
137521 AACATCCTACACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
137546 GTTGGC
1 GATGGC
137552 TTGAAGAACT
Statistics
Matches: 261, Mismatches: 14, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
89 27 0.10
90 146 0.56
91 88 0.34
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.27
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:137488 original size:181 final size:179
Alignment explanation
Indices: 137186--138333 Score: 1186
Period size: 180 Copynumber: 6.1 Consensus size: 179
137176 AATACTTACT
* *
137186 GATGGCCCGGAGGACTTATAAATCAAGAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
*
137251 ACATCCTGCACTGAAGGTCTTATGGATGGCTCGAAGGACTTACAAATCAAGAAACCCACGAAGGC
66 ACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGGC
* * *
137316 TTAGTTTCTTAAATCTTATTTGAAAACATCCTGCACTGAAGGTCTTATG
131 TTAGTTTCTTAAATCTCATTTAAAAACATCCTACACTGAAGGTCTTATG
*
137365 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTC-TAAAATCTCATTTGA
*
137430 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
64 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAG
137495 GCTTAGTTTCTTAAATCTCATTTAAAAACATCCTACACTGAAGGTCTTATG
129 GCTTAGTTTCTTAAATCTCATTTAAAAACATCCTACACTGAAGGTCTTATG
* ** * * * * * ***
137546 GTTGGCTTGAAGAACTAACGCATCATGCTTGAAAGACTTAATGATGGCCCGGAGGACTTACAAAT
1 GATGGCCCGAAGGACTTA--CA-AAT-C----AAG----AA--A--CCCCGAAGG-CTTA-GTTT
* * * * *
137611 CAAGAAACCCTCGAAGGCTTAGTTTCTAAAATC-TCATTTGAAAACATCCTGCACTGAAAGTCTT
48 CTA-AAA---T------CTCA-TTT-GAAAA-CATC--CT-----------GCACTGAAGGTCTT
* * *
137675 ATTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATT
87 ATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTT-AAATCTCATT
* * *
137740 TGAAAACATCATGCACTGAAGGTCTTATG
151 TAAAAACATCCTACACTGAAGGTCTTATG
* *
137769 GATGGCCCGAAGGACTTACAAATCAA-AAACCCCCCGAAGGCTTGGTTTCTTAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAA--CCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
* * * * * *
137833 AAATATCTTGCACTGAAGGTCTTCTGGATGGCCTGAAGGACTTACAAGTCAAGAAACCCCCGAAG
64 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAG
* * * *
137898 GCTTAGTTTCTTAAATTTCATTTGAAAATATCCTGCACTGAAGGTCTTATG
129 GCTTAGTTTCTTAAATCTCATTTAAAAACATCCTACACTGAAGGTCTTATG
* * * *
137949 GATGGCTCGAAGGGCTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTTTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCC-GAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * *
138014 AACATCATGCACTGAAGGTCTTATGGATGACCCGAAGAACTTACAAATCAAGGAACCCCCGAAGG
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGG
* * * *
138079 CTTAGTTTCTTAAATCTCATTTGAAATCATCCTGCACTGAAGGTCATATG
130 CTTAGTTTCTTAAATCTCATTTAAAAACATCCTACACTGAAGGTCTTATG
* * *
138129 GATGGCCTGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTAAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTC-TAAAATCTCATTTGA
* * *
138194 AAACATCCTGCACTGAAGTTCTTATTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
64 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAG
* * * ** * *
138259 GCTTA-TTTCTTAAATCTTATTTGAAACCATCCTGTACTAAATGTCTTATG
129 GCTTAGTTTCTTAAATCTCATTTAAAAACATCCTACACTGAAGGTCTTATG
*
138309 GATGGCCCGAAGGACTTAAAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
138334 TGCTCGAAAG
Statistics
Matches: 824, Mismatches: 94, Indels: 101
0.81 0.09 0.10
Matches are distributed among these distances:
179 32 0.04
180 311 0.38
181 285 0.35
183 2 0.00
184 2 0.00
185 1 0.00
189 3 0.00
192 2 0.00
193 2 0.00
194 6 0.01
195 4 0.00
196 10 0.01
197 5 0.01
198 5 0.01
201 1 0.00
202 1 0.00
205 3 0.00
206 2 0.00
207 5 0.01
208 11 0.01
209 6 0.01
210 3 0.00
211 1 0.00
215 2 0.00
219 1 0.00
220 2 0.00
221 2 0.00
222 66 0.08
223 48 0.06
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (179 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
ACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGGC
TTAGTTTCTTAAATCTCATTTAAAAACATCCTACACTGAAGGTCTTATG
Found at i:137654 original size:313 final size:313
Alignment explanation
Indices: 137275--137870 Score: 1032
Period size: 313 Copynumber: 1.9 Consensus size: 313
137265 AGGTCTTATG
* * *
137275 GATGGCTCGAAGGACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTTAAATCTTATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
137340 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
66 AACATCCTGCACTGAAAGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
*
137405 CTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGA
131 CTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGA
137470 CTTACAAATCAAGAAA-CCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATCCTACACT
196 CTTACAAATCAA-AAACCCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATCCTACACT
* *
137534 GAAGGTCTTATGGTTGGCTTGAAGAACTAACGCATCATGCTTGAAAGACTTAAT
260 GAAGGTCTTATGGATGGCCTGAAGAACTAACGCATCATGCTTGAAAGACTTAAT
* *
137588 GATGGCCCGGAGGACTTACAAATCAAGAAACCCTCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
137653 AACATCCTGCACTGAAAGTCTTATTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
66 AACATCCTGCACTGAAAGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
137718 CTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGA
131 CTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGA
* * * * *
137783 CTTACAAATCAAAAACCCCCCGAAGGCTTGGTTTCTTAAATCTCATTTGAAAATATCTTGCACTG
196 CTTACAAATCAAAAACCCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATCCTACACTG
*
137848 AAGGTCTTCTGGATGGCCTGAAG
261 AAGGTCTTATGGATGGCCTGAAG
137871 GACTTACAAG
Statistics
Matches: 266, Mismatches: 16, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
312 3 0.01
313 263 0.99
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (313 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAAGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
CTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGA
CTTACAAATCAAAAACCCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATCCTACACTG
AAGGTCTTATGGATGGCCTGAAGAACTAACGCATCATGCTTGAAAGACTTAAT
Found at i:137799 original size:90 final size:90
Alignment explanation
Indices: 137588--138333 Score: 1127
Period size: 90 Copynumber: 8.3 Consensus size: 90
137578 AAGACTTAAT
* * *
137588 GATGGCCCGGAGGACTTACAAATCAAGAAACCCTCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
137653 AACATCCTGCACTGAAAGTCTTATT
66 AACATCCTGCACTGAAGGTCTTATG
*
137678 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
*
137743 AAACATCATGCACTGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
*
137769 GATGGCCCGAAGGACTTACAAATCAA-AAACCCCCCGAAGGCTTGGTTTCTTAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAA-CCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGA
* * *
137833 AAATATCTTGCACTGAAGGTCTTCTG
65 AAACATCCTGCACTGAAGGTCTTATG
* * *
137859 GATGGCCTGAAGGACTTACAAGTCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
137924 AATATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * * *
137949 GATGGCTCGAAGGGCTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTTTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
138014 AACATCATGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * *
138039 GATGACCCGAAGAACTTACAAATCAAGGAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
138104 ATCATCCTGCACTGAAGGTCATATG
66 AACATCCTGCACTGAAGGTCTTATG
* * *
138129 GATGGCCTGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTAAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* *
138194 AAACATCCTGCACTGAAGTTCTTATT
65 AAACATCCTGCACTGAAGGTCTTATG
*
138220 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTA-TTTCTTAAATCTTATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * *
138284 ACCATCCTGTACTAAATGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
138309 GATGGCCCGAAGGACTTAAAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
138334 TGCTCGAAAG
Statistics
Matches: 594, Mismatches: 58, Indels: 9
0.90 0.09 0.01
Matches are distributed among these distances:
89 55 0.09
90 379 0.64
91 160 0.27
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.27
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:138466 original size:132 final size:131
Alignment explanation
Indices: 138219--138595 Score: 540
Period size: 132 Copynumber: 2.9 Consensus size: 131
138209 AAGTTCTTAT
* * *
138219 TGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTA-TTTCTTAAATCTTATTTGA
1 TGATGGCCCGGAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
* * * *
138283 AACCATCCTGTACTAAATGTCTTATGGATGGCCCGAAGGACTTAAAAATCATGCTCGAAAGACAT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAAAAATCATGCTCGAAAGACAT
138348 AC
130 AC
*
138350 TGATGGCCCGGAGGACTTACAAATCAAGAAACCTCCGAAGGCTTAGTTTCTAAAATCTCATTCGA
1 TGATGGCCCGGAGGACTTACAAATCAAGAAACC-CCGAAGGCTTAGTTTCTAAAATCTCATTTGA
* * * *** *
138415 AAGCATCCTGCGCTGAAGGTCTTATGGATGGCCCGAAGGTCTTACCCATCATGCTCGAAAGACTT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAAAAATCATGCTCGAAAGACAT
138480 AC
130 AC
* *
138482 TGATGGCCCGGAGGACTTACAAATCAAGAAACCCACGGATGCTTAGTTTCTAAAATCTCATTTGA
1 TGATGGCCCGGAGGACTTACAAATCAAGAAACCC-CGAAGGCTTAGTTTCTAAAATCTCATTTGA
* * *
138547 AAACATCCTGCACTGAAGGTCTTATGGATGGCTCGGAGGACTTACAAAT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAAAAAT
138596 AAAGAAACTC
Statistics
Matches: 219, Mismatches: 24, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
130 2 0.01
131 42 0.19
132 175 0.80
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (131 bp):
TGATGGCCCGGAGGACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAAAAATCATGCTCGAAAGACATA
C
Found at i:138768 original size:90 final size:90
Alignment explanation
Indices: 138483--138778 Score: 441
Period size: 90 Copynumber: 3.3 Consensus size: 90
138473 AAGACTTACT
* * *
138483 GATGGCCCGGAGGACTTACAAATCAAGAAACCCACGGAT-GCTTAGTTTCTAAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCC-CCGATGGCTTAGTTTCTTAAATCTCATTTGA
138547 AAACATCCTGCACTGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* * * * * * *
138573 GATGGCTCGGAGGACTTACAAATAAAGAAACTCCCGAAGGCTTAGTTTCTTAAAATTTTATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGATGGCTTAGTTTCTT-AAATCTCATTTGA
* *
138638 AAACATCCTGTACGGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
*
138664 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGATGGCTTGGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGATGGCTTAGTTTCTTAAATCTCATTTGAA
*
138729 AACATCCTGCACTGAGGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
138754 GATGGCCCGAAGGACTTACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
138779 TGCTCGAATG
Statistics
Matches: 183, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
89 3 0.02
90 100 0.55
91 80 0.44
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGATGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:138915 original size:132 final size:132
Alignment explanation
Indices: 138664--139168 Score: 740
Period size: 132 Copynumber: 3.8 Consensus size: 132
138654 AGGTCTTATG
* * * *
138664 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGATGGCTTGGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* ** *
138729 AACATCCTGCACTGAGGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAATGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
138794 CT
131 CT
* * * ** *
138796 GATAGCCCGGAGGACTCACAAATAAAGAAACCCCTAAAGGCATAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
138861 AACATCCTACACTGAAGGTCTTATGGATGGCCCGAAGGATTTACGCATCTTGCTCGAAAGTCTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
138926 CT
131 CT
* *
138928 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
138993 AATATCCTGCACTAAAGGTCTTATGGATGGCTCGGAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
139058 CT
131 CT
* * *
139060 AATGGCCTGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
** *
139125 AACATTATGCACTGAAGGTCCTATGGATGGCCCGAAGGACTTAC
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
139169 AAATCAAGAA
Statistics
Matches: 327, Mismatches: 46, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
132 327 1.00
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.25
Consensus pattern (132 bp):
GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
CT
Found at i:139116 original size:577 final size:576
Alignment explanation
Indices: 138214--139355 Score: 1712
Period size: 577 Copynumber: 2.0 Consensus size: 576
138204 CACTGAAGTT
* * * * * * * *
138214 CTTATTGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTATTTCTTAAATCTTAT
1 CTTACTGATAGCCCGAAGGACTCACAAATAAAGAAACCCCCAAAGGCATATTTCTAAAATCTCAT
* ** *
138279 TTGAAACCATCCTGTACTAAATGTCTTATGGATGGCCCGAAGGACTTAAAAATCATGCTCGAAAG
66 TTGAAAACATCCTACACTAAAGGTCTTATGGATGGCCCGAAGGACTTAAAAATCATGCTCGAAAG
* * *
138344 ACATACTGATGGCCCGGAGGACTTACAAATCAAGAAACCTCCGAAGGCTTAGTTTCTAAAATCTC
131 ACATACTGATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATC
* * * *
138409 ATTCGAAAGCATCCTGCGCTGAAGGTCTTATGGATGGCCCGAAGGTCTTACCCATCATGCTCGAA
196 ATTCGAAAACATCCTGCACTAAAGGTCTTATGGATGGCCCGAAGGACTTACCCATCATGCTCGAA
* * *
138474 AGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCACGGATGCTTAGTTTCTAAAATC
261 AGACTTACTAATGGCCCGGAGGACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTAAAATC
* * * *
138539 TCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCTCGGAGGACTTACAAATAAAGAAAC
326 TCATTTGAAAACATCATGCACTGAAGGTCCTATGGATGGCCCGAAGGACTTACAAATAAAGAAAC
* * * *
138604 TCCC-GAAGGCTTAGTTTCTTAAAATTTTATTTGAAAACATCCTGTACGGAAGGTCTTATGGATG
391 -CCCTGAAGGCTTAGTTGCTT-AAATCTCATTTGAAAACATCCTGCACGGAAGGTCTTATGGATG
* * *
138668 GCCCGAAGGACTTACAAATCAAGAAACCCCCGATGGCTTGGTTTCTTAAA-TCTCATTTGAAAAC
454 GCCCAAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTCTCATTTGAAAAC
* *
138732 ATCCTGCACTGAGGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAATGA
519 ATCCTGCACTGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCATGCTCGAATGA
* *
138790 CTTACTGATAGCCCGGAGGACTCACAAATAAAGAAACCCCTAAAGGCATAGTTTCTAAAATCTCA
1 CTTACTGATAGCCCGAAGGACTCACAAATAAAGAAACCCCCAAAGGCATA-TTTCTAAAATCTCA
* * *** *
138855 TTTGAAAACATCCTACACTGAAGGTCTTATGGATGGCCCGAAGGATTTACGCATCTTGCTCGAAA
65 TTTGAAAACATCCTACACTAAAGGTCTTATGGATGGCCCGAAGGACTTAAAAATCATGCTCGAAA
* *
138920 GTCTTACTGATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATAT
130 GACATACTGATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATAT
* * * * *
138985 CATTTGAAAATATCCTGCACTAAAGGTCTTATGGATGGCTCGGAGGACTTACGCATCATGCTCGA
195 CATTCGAAAACATCCTGCACTAAAGGTCTTATGGATGGCCCGAAGGACTTACCCATCATGCTCGA
* * *
139050 AAGACTTACTAATGGCCTGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTTAAAAT
260 AAGACTTACTAATGGCCCGGAGGACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTAAAAT
* *
139115 CTCATTTGAAAACATTATGCACTGAAGGTCCTATGGATGGCCCGAAGGACTTACAAATCAAGAAA
325 CTCATTTGAAAACATCATGCACTGAAGGTCCTATGGATGGCCCGAAGGACTTACAAATAAAGAAA
*
139180 CCCCTGAAGGCTTAGTTGCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGG
390 CCCCTGAAGGCTTAGTTGCTTAAATCTCATTTGAAAACATCCTGCACGGAAGGTCTTATGGATGG
*
139245 CCCAAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTTTCATTTGAAAACA
455 CCCAAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTCTCATTTGAAAACA
* *
139310 TCCTGCACTGAAGGTCTTATGGATGACCCTAATGACTTACAAATCA
520 TCCTGCACTGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCA
139356 AGAAACCCCC
Statistics
Matches: 504, Mismatches: 59, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
576 131 0.26
577 373 0.74
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (576 bp):
CTTACTGATAGCCCGAAGGACTCACAAATAAAGAAACCCCCAAAGGCATATTTCTAAAATCTCAT
TTGAAAACATCCTACACTAAAGGTCTTATGGATGGCCCGAAGGACTTAAAAATCATGCTCGAAAG
ACATACTGATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATC
ATTCGAAAACATCCTGCACTAAAGGTCTTATGGATGGCCCGAAGGACTTACCCATCATGCTCGAA
AGACTTACTAATGGCCCGGAGGACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTAAAATC
TCATTTGAAAACATCATGCACTGAAGGTCCTATGGATGGCCCGAAGGACTTACAAATAAAGAAAC
CCCTGAAGGCTTAGTTGCTTAAATCTCATTTGAAAACATCCTGCACGGAAGGTCTTATGGATGGC
CCAAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTCTCATTTGAAAACAT
CCTGCACTGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCATGCTCGAATGA
Found at i:139214 original size:90 final size:90
Alignment explanation
Indices: 139061--139896 Score: 1300
Period size: 90 Copynumber: 9.3 Consensus size: 90
139051 AGACTTACTA
* *
139061 ATGGCCTGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTT-TTAAAATCTCATTTGAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAA
** *
139125 AACATTATGCACTGAAGGTCCTATGG
65 AACATCCTGCACTGAAGGTCTTATGG
* *
139151 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTGCTTAAATCTCATTTGAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
139216 ACATCCTGCACTGAAGGTCTTATGG
66 ACATCCTGCACTGAAGGTCTTATGG
* *
139241 ATGGCCCAAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTTTCATTTGAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAA-TCTCATTTGAA
139306 AACATCCTGCACTGAAGGTCTTATGG
65 AACATCCTGCACTGAAGGTCTTATGG
* * * * *
139332 ATGACCCTAATGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTTTAAATCTCTTTTGAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
139397 ACATCCTGCACTGAAGGTCTTATGG
66 ACATCCTGCACTGAAGGTCTTATGG
*
139422 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
*
139487 AGCATCCTGTACTGAAGGTCTTATGG
66 A-CATCCTGCACTGAAGGTCTTATGG
* *
139513 AT-GCCCGAAGGACTTATAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAA
139577 AACATCCTGCACTGAAGGTCTTATGG
65 AACATCCTGCACTGAAGGTCTTATGG
* *
139603 ATGGCCTGAAGGACTTACAAATCAATAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
* *
139668 ACATCCTGCACTGAAAGTTTTATGG
66 ACATCCTGCACTGAAGGTCTTATGG
* * * * *
139693 ATGGCCCGAAGGACTTACAAATCAAAAAACCACCGAAGGCTTAGCTTCTTAAAATTTCAATTGAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAA
* * *
139758 AACATCATGCACTGAAGATCATATGG
65 AACATCCTGCACTGAAGGTCTTATGG
* * * *
139784 ATGGTCCGAAGGACTTACAAATCAAGAAGCCCCCGAAGGCTAAGTTTCTTAAATCTCATTTAAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
139849 ACATCCTG-ACTGAAGGTCTTATGG
66 ACATCCTGCACTGAAGGTCTTATGG
139873 ATGGCCCGAAGGACTTACAAATCA
1 ATGGCCCGAAGGACTTACAAATCA
139897 TGCTCGAAAC
Statistics
Matches: 682, Mismatches: 58, Indels: 13
0.91 0.08 0.02
Matches are distributed among these distances:
89 37 0.05
90 398 0.58
91 247 0.36
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.27
Consensus pattern (90 bp):
ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
ACATCCTGCACTGAAGGTCTTATGG
Found at i:139373 original size:181 final size:181
Alignment explanation
Indices: 139061--139896 Score: 1304
Period size: 181 Copynumber: 4.6 Consensus size: 181
139051 AGACTTACTA
* *
139061 ATGGCCTGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTT-TTAAAATCTCATTTGAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAA
** * *
139125 AACATTATGCACTGAAGGTCCTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGAAGG
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
*
139190 CTTAGTTGCTT-AAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGG
130 CTTAGTTTCTTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGG
* *
139241 ATGGCCCAAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTTTCATTTGAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAA-TCTCATTTGAA
* * *
139306 AACATCCTGCACTGAAGGTCTTATGGATGACCCTAATGACTTACAAATCAAGAAACCCCCGAAGG
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
* *
139371 CTTAGTTT-TTTAAATCTCTTTTGAAAACATCCTGCACTGAAGGTCTTATGG
130 CTTAGTTTCTTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGG
*
139422 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
* *
139487 AGCATCCTGTACTGAAGGTCTTATGGAT-GCCCGAAGGACTTATAAATCAAGAAACCCCCGAAGG
66 A-CATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
*
139551 CTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACTGAAGGTCTTATGG
130 CTTAGTTTCTTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGG
* *
139603 ATGGCCTGAAGGACTTACAAATCAATAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
* * * *
139668 ACATCCTGCACTGAAAGTTTTATGGATGGCCCGAAGGACTTACAAATCAAAAAACCACCGAAGGC
66 ACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGC
* * * * * *
139733 TTAGCTTCTTAAAATTTCAATTGAAAACATCATGCACTGAAGATCATATGG
131 TTAGTTTCTTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGG
* * * *
139784 ATGGTCCGAAGGACTTACAAATCAAGAAGCCCCCGAAGGCTAAGTTTCTTAAATCTCATTTAAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
139849 ACATCCTG-ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
66 ACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
139897 TGCTCGAAAC
Statistics
Matches: 604, Mismatches: 46, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
180 161 0.27
181 443 0.73
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.27
Consensus pattern (181 bp):
ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
ACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGC
TTAGTTTCTTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGG
Found at i:139555 original size:271 final size:269
Alignment explanation
Indices: 139070--139896 Score: 1298
Period size: 271 Copynumber: 3.1 Consensus size: 269
139060 AATGGCCTGG
* **
139070 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTTAAAATCTCATTTGAAAACATTATGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTTTAAATCTCATTTGAAAACATCCTGC
* * *
139135 ACTGAAGGTCCTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTGCT
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCT
*
139200 TAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCAAAGGACTTACAAATCA
131 TAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
139265 AGAAACCCCCGAAGGCTTAGTTTCTTAAATTTTCATTTGAAAACATCCTGCACTGAAGGTCTTAT
196 AGAAACCCCCGAAGGCTTAGTTTCTTAAA-TTTCATTTGAAAACATCCTGCACTGAAGGTCTTAT
139330 GGATGACCCTA
260 GGATG-CCCTA
* *
139341 ATGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTTTAAATCTCTTTTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTTTAAATCTCATTTGAAAACATCCTGC
139406 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCT
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCT
* * *
139471 TAAATCTCATTTAAAAAGCATCCTGTACTGAAGGTCTTATGGAT-GCCCGAAGGACTTATAAATC
131 TAAATCTCATTTGAAAA-CATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATC
139535 AAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACTGAAGGTCTTA
195 AAGAAACCCCCGAAGGCTTAGTTTCTT-AAATTTCATTTGAAAACATCCTGCACTGAAGGTCTTA
*
139600 TGGATGGCCTGA
259 TGGATGCCCT-A
* *
139612 AGGACTTACAAATCAATAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTTTAAATCTCATTTGAAAACATCCTGC
* * * * *
139677 ACTGAAAGTTTTATGGATGGCCCGAAGGACTTACAAATCAAAAAACCACCGAAGGCTTAGCTTCT
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCT
* * * * * *
139742 TAAAATTTCAATTGAAAACATCATGCACTGAAGATCATATGGATGGTCCGAAGGACTTACAAATC
131 T-AAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATC
* * * *
139807 AAGAAGCCCCCGAAGGCTAAGTTTCTTAAATCTCATTTAAAAACATCCTG-ACTGAAGGTCTTAT
195 AAGAAACCCCCGAAGGCTTAGTTTCTTAAATTTCATTTGAAAACATCCTGCACTGAAGGTCTTAT
*
139871 GGATGGCCCGA
260 GGAT-GCCCTA
139882 AGGACTTACAAATCA
1 AGGACTTACAAATCA
139897 TGCTCGAAAC
Statistics
Matches: 513, Mismatches: 37, Indels: 13
0.91 0.07 0.02
Matches are distributed among these distances:
270 37 0.07
271 392 0.76
272 84 0.16
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.27
Consensus pattern (269 bp):
AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTTTAAATCTCATTTGAAAACATCCTGC
ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCT
TAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
AGAAACCCCCGAAGGCTTAGTTTCTTAAATTTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
GATGCCCTA
Found at i:139904 original size:22 final size:23
Alignment explanation
Indices: 139873--139938 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 23
139863 GGTCTTATGG
139873 ATGGCCCGAAGGACTTACAAATC
1 ATGGCCCGAAGGACTTACAAATC
* ** *
139896 AT-GCTCGAAACACTTAC---TG
1 ATGGCCCGAAGGACTTACAAATC
139915 ATGGCCCGAAGGACTTACAAATC
1 ATGGCCCGAAGGACTTACAAATC
139938 A
1 A
139939 AGAAACCCAC
Statistics
Matches: 31, Mismatches: 8, Indels: 8
0.66 0.17 0.17
Matches are distributed among these distances:
19 3 0.10
20 12 0.39
22 12 0.39
23 4 0.13
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.20
Consensus pattern (23 bp):
ATGGCCCGAAGGACTTACAAATC
Found at i:140200 original size:90 final size:90
Alignment explanation
Indices: 139914--140209 Score: 466
Period size: 90 Copynumber: 3.3 Consensus size: 90
139904 AACACTTACT
* * *
139914 GATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTAAAATCTTATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATATTATTTGAA
139979 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * * *
140004 GATGGCCCGGAGGACTTACAAATAAAGAAACTCCCGAAGGCTTAGTTTCTTAAAATTTTATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATATTATTTGA
* *
140069 AAACATCCTGTACGGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* *
140095 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTGGTTTCTTAAATATCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATATTATTTGAA
*
140160 AACATCCTGCACTGAGGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
140185 GATGGCCCGAAGGACTTGCAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
140210 TGCTCGAATG
Statistics
Matches: 187, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
90 104 0.56
91 83 0.44
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATATTATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:140346 original size:132 final size:131
Alignment explanation
Indices: 140095--140599 Score: 733
Period size: 132 Copynumber: 3.8 Consensus size: 131
140085 AGGTCTTATG
* * *
140095 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTGGTTTCTTAAATATCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAA
* * **
140160 AACATCCTGCACTGAGGGTCTTATGGATGGCCCGAAGGACTTGCAAATCATGCTCGAATGAATTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAA-GAATTA
140225 CT
130 CT
* * * *
140227 GATGGCCCGGAGGACTCAAAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAA
* * **
140292 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGATTTACGCATCTTGCTCGAAAGTCTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCG-AAGAATTA
140357 CT
130 CT
*
140359 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAA
* * * * *
140424 AATATCCTGCACTAAAGGTCTTATGGATGGCTCGGAGGACTTACGCATCATGCTCGAAAAACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAGAA-TTA
140489 CT
130 CT
* * *
140491 AATGGCCTGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAA
* *
140556 AATATGCTGCACTGAAGGT-TCTATGGATGGCCCGAAGGACTTAC
66 AACATCCTGCACTGAAGGTCT-TATGGATGGCCCGAAGGACTTAC
140600 AAATCAAGAA
Statistics
Matches: 333, Mismatches: 37, Indels: 6
0.89 0.10 0.02
Matches are distributed among these distances:
131 3 0.01
132 328 0.98
133 2 0.01
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (131 bp):
GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAGAATTAC
T
Found at i:140645 original size:90 final size:90
Alignment explanation
Indices: 140492--141595 Score: 1752
Period size: 90 Copynumber: 12.3 Consensus size: 90
140482 AAACTTACTA
* * *
140492 ATGGCCTGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
* *
140557 ATATGCTGCACTGAAGGT-TCTATGG
66 ACATCCTGCACTGAAGGTCT-TATGG
*
140582 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
140647 ACATCCTGCACTGAAGGTCTTATGG
66 ACATCCTGCACTGAAGGTCTTATGG
* *
140672 ATGGCCCAAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTTTCATTTGAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAA-TCTCATTTGAA
140737 AACATCCTGCACTGAAGG-CTTATGG
65 AACATCCTGCACTGAAGGTCTTATGG
* * *
140762 ATGGCCCTAATGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
* *
140827 ATATGCTGCACTGAAGGT-TCTATGG
66 ACATCCTGCACTGAAGGTCT-TATGG
*
140852 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
140917 ACATCCTGCACTGAAGGTCTTATGG
66 ACATCCTGCACTGAAGGTCTTATGG
* * * *
140942 ATGGACCAAATGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTTTCATTTGAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAA-TCTCATTTGAA
141007 AACATCCTGCACTGAAGG-CTTATGG
65 AACATCCTGCACTGAAGGTCTTATGG
* * *
141032 ATGGCCCTAATGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTTTAAATCTCATTTGAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
*
141097 ACATCTTGCACTGAAGGTCTTATGG
66 ACATCCTGCACTGAAGGTCTTATGG
141122 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
141187 ACATCCTGCACTGAAGGTCTTATGG
66 ACATCCTGCACTGAAGGTCTTATGG
* *
141212 AT-GCCCGAAGGACTTATAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAA
* *
141276 AACATCCTGCCCTGAATGTCTTATGG
65 AACATCCTGCACTGAAGGTCTTATGG
* * *
141302 ATAGCCCGAAGGACTTACAAATCAATAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAG
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
*
141367 ACATCCTGCACTGAAAGTCTTATGG
66 ACATCCTGCACTGAAGGTCTTATGG
* * * * *
141392 ATGGCCCGAAGGACTTTCAAATCAAGAAACCCCCGATGACTTAGTTTCTTAAAATTTCAATTGAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAA
* *
141457 AACATCATGCACTGAAGATCTTATGG
65 AACATCCTGCACTGAAGGTCTTATGG
*
141483 ATGGCCCGAAGGACTTACAAATCAAGAAGCCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
141548 ACATCCTG-ACTGAAGGTCTTATGG
66 ACATCCTGCACTGAAGGTCTTATGG
* *
141572 ATGGCTCGAAGGACTTATAAATCA
1 ATGGCCCGAAGGACTTACAAATCA
141596 TGCTCGAAAC
Statistics
Matches: 938, Mismatches: 66, Indels: 21
0.92 0.06 0.02
Matches are distributed among these distances:
89 137 0.15
90 618 0.66
91 183 0.20
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (90 bp):
ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
ACATCCTGCACTGAAGGTCTTATGG
Found at i:140826 original size:270 final size:269
Alignment explanation
Indices: 140492--142933 Score: 1968
Period size: 270 Copynumber: 8.8 Consensus size: 269
140482 AAACTTACTA
* *
140492 ATGGCCTGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
* *
140557 ATATGCTGCACTGAAGGT-TCTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGAAGG
66 ACATGCTGCACTGAAGGTCT-TATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
*
140621 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCAAAGGAC
130 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAC
140686 TTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTTTCATTTGAAAACATCCTGCACTG
195 TTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAA-TTTCATTTGAAAACATCCTGCACTG
140751 AAGGCTTATGG
259 AAGGCTTATGG
* *
140762 ATGGCCCTAATGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
* *
140827 ATATGCTGCACTGAAGGT-TCTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGAAGG
66 ACATGCTGCACTGAAGGTCT-TATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
* * *
140891 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGACCAAATGAC
130 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAC
140956 TTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTTTCATTTGAAAACATCCTGCACTG
195 TTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAA-TTTCATTTGAAAACATCCTGCACTG
141021 AAGGCTTATGG
259 AAGGCTTATGG
* * * *
141032 ATGGCCCTAATGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTTTAAATCTCATTTGAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
141097 ACAT-CTTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
66 ACATGC-TGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
141161 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGAT-GCCCGAAGGAC
130 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAC
* *
141225 TTATAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCCCTG
195 TTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATTTCATTTGAAAACATCCTGCACTG
*
141290 AATGTCTTATGG
259 AA-GGCTTATGG
* * * *
141302 ATAGCCCGAAGGACTTACAAATCAATAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAG
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
* * * * *
141367 ACATCCTGCACTGAAAGTCTTATGGATGGCCCGAAGGACTTTCAAATCAAGAAACCCCCGATGAC
66 ACATGCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGC
* * * *
141432 TTAGTTTCTTAAAATTTCAATTGAAAACATCATGCACTGAAGATCTTATGGATGGCCCGAAGGAC
131 TTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAC
* *
141497 TTACAAATCAAGAAGCCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTG-ACTGA
195 TTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTTCATTTGAAAACATCCTGCACTGA
141561 AGGTCTTATGG
260 AGG-CTTATGG
* * * ** * * ** *
141572 ATGGCTCGAAGGACTTATAAATCATGCTCGAAACAATTACTGATGGCCCGGAGGATT-TACAAA-
1 ATGGCCCGAAGGACTTACAAATCA----AGAAAC---CCCCGAAGG--CTTA-GTTTCTA-AAAT
* * ** ** * * * *
141635 -TCA--AGAAACCCACGAAGCCTTTGTTCT-AAAATCTCATTTGAAAACATCCTGCACTGAAGGT
55 CTCATTTGAAA---AC-ATG-C--TGCACTGAAGGTCT--TATG----GAT--GGC-CCGAAGG-
* * * *
141696 CTTATGGATGACCTGGAGGACTTACAAATAAAGAAACTCCCGAAGGCTTAGTTTCTTAAAATTTT
103 -------------------ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTC
* *
141761 ATTTGAAAACATCCTGTACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCC
148 ATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCC
* * ** *
141826 CCGAAGGCTTGGTTTCTTTAAGCTCATTTGAAAACATCCTGCACTGAGGGTCTTATGG
213 CCGAAGGCTTAGTTTCTTAAATTTCATTTGAAAACATCCTGCACTGAAGG-CTTATGG
* * * ** **** ***
141884 ATGGCCCGAAGGACTTATAAAT-AATG-----CTCGAATGACTTACTGATGGCCCGGAGGGC-TT
1 ATGGCCCGAAGGACTTACAAATCAA-GAAACCCCCGAA-GGCTTA--G-TTTCTAAAATCTCATT
** * *** * ** * * ** *
141942 ACAAATA-AAGAAACCCCTGAAGG-CTTA--G-T--TTCTAA--AATCT-CATTTGAA-AACATC
61 TGAAA-ACATG-CTGCACTGAAGGTCTTATGGATGGCCCGAAGGACT-TACAAATCAAGAA-A-C
* ** *** ** ** * * *
141996 CTGCACTGAAGGTCTTATGGATGGCGCGAA--GGATTT--ACGCATCTTGCTC-GAAAGTCTTAC
121 C--C-CCGAAGG-CTTA--G-TTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTA-
* * *
142056 T-GATGGCCC-AGAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTT
178 TGGATGGCCCGA-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTTCATTT
* *
142119 GAAAATATCCTGCACTAAAGGTCTTATGG
242 GAAAACATCCTGCACTGAAGG-CTTATGG
* * * ** *** * * **
142148 ATGGCTCGGAGGACTTACGCATCATGCTCGAAAGACTTACTAATGGCCTGGAG-GACTTACAAA-
1 ATGGCCCGAAGGACTTA--CA-AAT-CAAG-AA-ACCCCCGAA-GG-CT-TAGTTTC-TA-AAAT
* * * ** ** * * *
142211 -TCA--AGAAACCCCTGAAGGCTTAGTTTCT-AAAATCTCATTTGAAAACATGCTGCACTGAAGG
55 CTCATTTGAAA--AC---ATGC-T-G-CACTGAAGGTCT--TATG----GATG--GC-CCGAAG-
* *
142272 TCCTATGGATGGTCCGAAGAACTTACAAATCAAGAAACTCCTGAAGGCTTAGTTTCTTAAATCTC
102 ------------------G-ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTC
* *
142337 ATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGACCCAAAGGACTTACAAATCAAGAAACCC
148 ATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCC
142402 CCGAAGGCTTAGTTTCTTAAATTTTCATTTGAAAACATCCTGCACTGAAGGTCTTATGG
213 CCGAAGGCTTAGTTTCTTAAA-TTTCATTTGAAAACATCCTGCACTGAAGG-CTTATGG
* * * * *
142461 ATGG-ACTAATGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTTTAAATCTCATTTGAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
* **
142525 ACATCCTGCACTGAAGGTCTTATGGATTACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGC
66 ACATGCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGC
* *
142590 TTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGACTGAAGGACT
131 TTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACT
* * * * *
142655 TACAAATCAATAAACCTCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCATGCACTAAA
196 TACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTTCATTTGAAAACATCCTGCACT-GA
*
142720 AGTCTTATGG
260 AGGCTTATGG
* * * * *
142730 ATGGTCCGAAGGACTTACAAATCAAGAAACCCCCGATGGCTTAGTTTCTTAAAATTTAAATTGAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATCTCATTTGAA
*
142795 AACAT-CATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAGCCCCCGAAG
65 AACATGC-TGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
*
142859 GCTTAGTTTCTTCAATCTCATTTGAAAACATCCTG-ACTGAAGGTCTTATGGATGGCCCGAAGGA
129 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGA
142923 CTTACAAATCA
194 CTTACAAATCA
142934 TGCTCGAAAT
Statistics
Matches: 1762, Mismatches: 250, Indels: 320
0.76 0.11 0.14
Matches are distributed among these distances:
261 2 0.00
262 8 0.00
263 3 0.00
264 104 0.06
265 10 0.01
266 7 0.00
267 10 0.01
268 1 0.00
269 107 0.06
270 815 0.46
271 168 0.10
272 49 0.03
273 3 0.00
274 4 0.00
275 7 0.00
276 5 0.00
277 8 0.00
278 5 0.00
279 9 0.01
280 7 0.00
281 2 0.00
282 6 0.00
283 4 0.00
284 5 0.00
288 3 0.00
289 1 0.00
290 7 0.00
291 7 0.00
293 4 0.00
296 1 0.00
297 3 0.00
298 6 0.00
299 10 0.01
300 7 0.00
301 4 0.00
302 4 0.00
303 4 0.00
304 10 0.01
305 2 0.00
306 9 0.01
307 6 0.00
308 4 0.00
309 6 0.00
310 6 0.00
311 155 0.09
312 103 0.06
313 39 0.02
314 2 0.00
315 8 0.00
316 2 0.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (269 bp):
ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
ACATGCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGC
TTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACT
TACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTTCATTTGAAAACATCCTGCACTGAA
GGCTTATGG
Found at i:141716 original size:131 final size:131
Alignment explanation
Indices: 141482--141724 Score: 364
Period size: 131 Copynumber: 1.9 Consensus size: 131
141472 AGATCTTATG
* * * *
141482 GATGGCCCGAAGGACTTACAAATCAAGAAGCCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGCCTTAGTTTCTAAAATCTCATTTGAA
* *
141547 AACATCCTGACTGAAGGTCTTATGGATGGCTCGAAGGACTTATAAATCATGCTCGAAACAATTAC
66 AACATCCTGACTGAAGGTCTTATGGATGCCTCGAAGGACTTACAAATCATGCTCGAAACAATTAC
141612 T
131 T
* * *
141613 GATGGCCCGGAGGATTTACAAATCAAGAAACCCACGAAGCCTTTG-TTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGCCTTAGTTTCTAAAATCTCATTTGAA
*
141677 AACATCCTGCACTGAAGGTCTTATGGATGACCT-GGAGGACTTACAAAT
66 AACATCCTG-ACTGAAGGTCTTATGGATG-CCTCGAAGGACTTACAAAT
141725 AAAGAAACTC
Statistics
Matches: 100, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
130 27 0.27
131 71 0.71
132 2 0.02
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (131 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGCCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGACTGAAGGTCTTATGGATGCCTCGAAGGACTTACAAATCATGCTCGAAACAATTAC
T
Found at i:141895 original size:90 final size:90
Alignment explanation
Indices: 141613--141905 Score: 390
Period size: 91 Copynumber: 3.3 Consensus size: 90
141603 AACAATTACT
* * * * * *
141613 GATGGCCCGGAGGATTTACAAATCAAGAAACCCACGAAGCCTTTG-TTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
141677 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * * * * * *
141702 GATGACCTGGAGGACTTACAAATAAAGAAACTCCCGAAGGCTTAGTTTCTTAAAATTTTATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* *
141767 AAACATCCTGTACGGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* * *
141793 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTGGTTTCTTTAAGCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
141858 AACATCCTGCACTGAGGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
141883 GATGGCCCGAAGGACTTATAAAT
1 GATGGCCCGAAGGACTTACAAAT
141906 AATGCTCGAA
Statistics
Matches: 175, Mismatches: 27, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
89 37 0.21
90 58 0.33
91 80 0.46
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:142044 original size:132 final size:132
Alignment explanation
Indices: 141793--142297 Score: 722
Period size: 132 Copynumber: 3.8 Consensus size: 132
141783 AGGTCTTATG
* * * ** *
141793 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTGGTTTCTTTAAGCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *** * *
141858 AACATCCTGCACTGAGGGTCTTATGGATGGCCCGAAGGACTTATAAATAATGCTCGAATGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
141923 CT
131 CT
* *
141925 GATGGCCCGGAGGGCTTACAAATAAAGAAACCCCTGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
141990 AACATCCTGCACTGAAGGTCTTATGGATGGCGCGAAGGATTTACGCATCTTGCTCGAAAGTCTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
142055 CT
131 CT
* *
142057 GATGGCCCAGAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAA
1 GATGGCCCGGAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
142122 AATATCCTGCACTAAAGGTCTTATGGATGGCTCGGAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
142187 CT
131 CT
* * * *
142189 AATGGCCTGGAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
142254 AACATGCTGCACTGAAGGTCCTATGGATGGTCCGAAGAACTTAC
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
142298 AAATCAAGAA
Statistics
Matches: 330, Mismatches: 43, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
132 330 1.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (132 bp):
GATGGCCCGGAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
CT
Found at i:142355 original size:90 final size:90
Alignment explanation
Indices: 142190--142933 Score: 1150
Period size: 90 Copynumber: 8.3 Consensus size: 90
142180 AGACTTACTA
* * * *
142190 ATGGCCTGGAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
* *
142255 ACATGCTGCACTGAAGGTCCTATGG
66 ACATCCTGCACTGAAGGTCTTATGG
* * * *
142280 ATGGTCCGAAGAACTTACAAATCAAGAAACTCCTGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
142345 ACATCCTGCACTGAAGGTCTTATGG
66 ACATCCTGCACTGAAGGTCTTATGG
* * *
142370 ATGACCCAAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTTTCATTTGAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAA-TCTCATTTGAA
142435 AACATCCTGCACTGAAGGTCTTATGG
65 AACATCCTGCACTGAAGGTCTTATGG
* * * *
142461 ATGG-ACTAATGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTTTTAAATCTCATTTGAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
142525 ACATCCTGCACTGAAGGTCTTATGG
66 ACATCCTGCACTGAAGGTCTTATGG
**
142550 ATTACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
142615 ACATCCTGCACTGAAGGTCTTATGG
66 ACATCCTGCACTGAAGGTCTTATGG
* * * *
142640 ATGGACTGAAGGACTTACAAATCAATAAACCTCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
* * *
142705 ACATCATGCACTAAAAGTCTTATGG
66 ACATCCTGCACTGAAGGTCTTATGG
* * * * *
142730 ATGGTCCGAAGGACTTACAAATCAAGAAACCCCCGATGGCTTAGTTTCTTAAAATTTAAATTGAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAA
*
142795 AACATCATGCACTGAAGGTCTTATGG
65 AACATCCTGCACTGAAGGTCTTATGG
* *
142821 ATGGCCCGAAGGACTTACAAATCAAGAAGCCCCCGAAGGCTTAGTTTCTTCAATCTCATTTGAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
142886 ACATCCTG-ACTGAAGGTCTTATGG
66 ACATCCTGCACTGAAGGTCTTATGG
142910 ATGGCCCGAAGGACTTACAAATCA
1 ATGGCCCGAAGGACTTACAAATCA
142934 TGCTCGAAAT
Statistics
Matches: 597, Mismatches: 54, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
89 78 0.13
90 398 0.67
91 121 0.20
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (90 bp):
ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
ACATCCTGCACTGAAGGTCTTATGG
Found at i:143135 original size:89 final size:91
Alignment explanation
Indices: 142951--143155 Score: 306
Period size: 89 Copynumber: 2.3 Consensus size: 91
142941 AATACTTACT
* *
142951 GATGGCCCGGAGGACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTTAAAATCTCATTTGA
143016 AAACATCCTGCACGGAAGGTCTTATG
66 AAACATCCTGCACGGAAGGTCTTATG
* *
143042 GATGGCCCGAAGGACTTACAAATCAAGAAACCC-CGCAGGCTTGGTTTCTT-AAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* ** * *
143105 AAATATCCTGCATTGAGGGTCTTGTG
66 AAACATCCTGCACGGAAGGTCTTATG
*
143131 GATGGCCCGAAGGAATTACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
143156 TGCTCGAAAG
Statistics
Matches: 104, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
89 57 0.55
90 15 0.14
91 32 0.31
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (91 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTTAAAATCTCATTTGA
AAACATCCTGCACGGAAGGTCTTATG
Found at i:143135 original size:222 final size:221
Alignment explanation
Indices: 142729--143273 Score: 851
Period size: 222 Copynumber: 2.5 Consensus size: 221
142719 AAGTCTTATG
* * * * *
142729 GATGGTCCGAAGGACTTACAAATCAAGAAACCCCCGATGGCTTAGTTTCTTAAAATTTAAATTGA
1 GATGGCCCGGAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
* *
142794 AAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAGCCCCCGAAG
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAGACCCCGAAG
* *
142859 GCTTAGTTTCTTCAATCTCATTTGAAAACATCCTGACTGAAGGTCTTATGGATGGCCCGAAGGAC
130 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGACTGAAGGTCTTATGGATGGCCCGAAGGAA
*
142924 TTACAAATCATGCTCGAAATACTTACT
195 TTACAAATCATGCTCGAAAGACTTACT
142951 GATGGCCCGGAGGACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCC-CGAAGGCTTAGTTTCTTAAAATTTCATTTGA
* *
143016 AAACATCCTGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAA-ACCCCGCAG
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAGACCCCGAAG
* * * * *
143080 GCTTGGTTTCTTAAATCTCATTTGAAAATATCCTGCATTGAGGGTCTTGTGGATGGCCCGAAGGA
130 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTG-ACTGAAGGTCTTATGGATGGCCCGAAGGA
143145 ATTACAAATCATGCTCGAAAGACTTACT
194 ATTACAAATCATGCTCGAAAGACTTACT
* * *
143173 GATGGCCCGGAGGACTTAGAAATCAAGAAACCCCTGAAGGCTTAGTTTC-AAAAATCTCATTTGA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCC-GAAGGCTTAGTTTCTTAAAATTTCATTTGA
*
143237 AAACATCCTGCACTGAAGGTCTTATGGATGACCCGAA
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAA
143274 TGATTTACGC
Statistics
Matches: 298, Mismatches: 22, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
221 91 0.31
222 207 0.69
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.25
Consensus pattern (221 bp):
GATGGCCCGGAGGACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAGACCCCGAAGG
CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGACTGAAGGTCTTATGGATGGCCCGAAGGAAT
TACAAATCATGCTCGAAAGACTTACT
Found at i:143292 original size:132 final size:132
Alignment explanation
Indices: 143042--143809 Score: 1135
Period size: 132 Copynumber: 5.8 Consensus size: 132
143032 AGGTCTTATG
* * * *
143042 GATGGCCCGAAGGACTTACAAATCAAGAAA-CCCCGCAGGCTTGGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * **
143106 AATATCCTGCATTGAGGGTCTTGTGGATGGCCCGAAGGAATTACAAATCATGCTCGAAAGACTTA
66 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
143171 CT
131 CT
* * *
143173 GATGGCCCGGAGGACTTAGAAATCAAGAAACCCCTGAAGGCTTAGTTTCAAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * * **
143238 AACATCCTGCACTGAAGGTCTTATGGATGACCCGAATGATTTACGCATCTTGCTCGAAAGTGTTA
66 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
143303 CT
131 CT
* * *
143305 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAAAATATCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
143370 AATATCCTGCACTAAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTA
66 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
143435 CT
131 CT
* *
143437 AATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
143502 AACATCCTACACT-AAGGGTCTTATGGATGGCCCGAAGGACTTACGGATCATGCTCGAAAGACTT
66 AATATCCTGCACTGAA-GGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTT
*
143566 AAT
130 ACT
* * * *
143569 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAAGCTTAGTTTCTAAAATATTATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * *
143634 AATATCATGCACTAAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATTATGCTCGACAGACTTA
66 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
143699 CT
131 CT
*
143701 GATGGCCCGGAGGAATTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
143766 AATATCCTGCACTGAAGGTCTTATGGATGGCTCGAAGGACTTAC
66 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
143810 AAATCAAGAA
Statistics
Matches: 569, Mismatches: 65, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
131 30 0.05
132 537 0.94
133 2 0.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.26
Consensus pattern (132 bp):
GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
CT
Found at i:143854 original size:90 final size:90
Alignment explanation
Indices: 143701--143899 Score: 326
Period size: 90 Copynumber: 2.2 Consensus size: 90
143691 CAGACTTACT
* * *
143701 GATGGCCCGGAGGAATTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATCTCATTTGAA
* *
143766 AATATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACAGAAGGTCTTATG
* *
143791 GATGGCTCGAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTTTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATCTCATTTGAA
143856 AACATCCTGCACAGAAGGTCTTATG
66 AACATCCTGCACAGAAGGTCTTATG
*
143881 GATGACCCGAAGGACTTAC
1 GATGGCCCGAAGGACTTAC
143900 GCATCATGCT
Statistics
Matches: 100, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
90 100 1.00
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.25
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACAGAAGGTCTTATG
Found at i:143881 original size:222 final size:222
Alignment explanation
Indices: 143569--144030 Score: 748
Period size: 222 Copynumber: 2.1 Consensus size: 222
143559 AAGACTTAAT
*
143569 GATGGCCC-AGAGGACTTACAAATCAAGAAACCCCCGAAAGCTTAGTTTCTAAAATATTATTTGA
1 GATGGCCCGA-AGGACTTACAAATCAAGAAACCCCCGAAAGCTTAGTTTCTAAAATATCATTTGA
* * * * *
143633 AAATATCATGCACTAAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATTATGCTCGACAGACTT
65 AAACATCATGCACTAAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTT
143698 ACTGATGGCCCGGAGGAATTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTT
130 ACTGATGGCCCGGAGGAATTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTT
* *
143763 GAAAATATCCTGCACTGAAGGTCTTATG
195 GAAAACATCCTGCACTGAAGGTCTCATG
* * * *
143791 GATGGCTCGAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTTTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAAGCTTAGTTTCTAAAATATCATTTGAA
*
143856 AACATCCTGCAC-AGAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTT
66 AACATCATGCACTA-AAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTT
**
143920 ACTGATGGCCCGGAGGGCTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTT
130 ACTGATGGCCCGGAGGAATTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTT
143985 GAAAACATCCTGCACTGAAGGTCTCATG
195 GAAAACATCCTGCACTGAAGGTCTCATG
*
144013 GATGGCCCGGAGGACTTA
1 GATGGCCCGAAGGACTTA
144031 TGCATCAAGC
Statistics
Matches: 221, Mismatches: 17, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
221 1 0.00
222 219 0.99
223 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (222 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAAGCTTAGTTTCTAAAATATCATTTGAA
AACATCATGCACTAAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
CTGATGGCCCGGAGGAATTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTG
AAAACATCCTGCACTGAAGGTCTCATG
Found at i:143954 original size:354 final size:354
Alignment explanation
Indices: 143438--144169 Score: 1180
Period size: 354 Copynumber: 2.1 Consensus size: 354
143428 AGACTTACTA
* *
143438 ATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTTAAATCTCATTTGAAA
* * *
143503 ACATCCTACACTAAGGGTCTTATGGATGGCCCGAAGGACTTACGGATCATGCTCGAAAGACTTAA
66 ACATCCTACACTAAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTTAA
*
143568 TGATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAAGCTTAGTTTCTAAAATATTATTTGA
131 TGATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAAGCTTAGTTTCTAAAATATCATTTGA
* * * * * *
143633 AAATATCATGCACTAAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATTATGCTCGACAGACTT
196 AAACATCATGCACTAAAGGTCTCATGGATGGCCCGAAGGACTTACGCATCAAGCTCGAAAGACTT
* *
143698 ACTGATGGCCCGGAGGAATTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTT
261 ACTGATGACCCGGAGGAATTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTT
143763 GAAAATATCCTGCACTGAAGGTCTTATGG
326 GAAAATATCCTGCACTGAAGGTCTTATGG
*
143792 ATGGCTCGAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTT-TTAAAATCTCATTTGAA
1 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTT-AAATCTCATTTGAA
*
143856 AACATCCTGCAC-AGAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTT
65 AACATCCTACACTA-AAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTT
* * * * *
143920 ACTGATGGCCCGGAGGGCTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTT
129 AATGATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAAGCTTAGTTTCTAAAATATCATTT
* * * * *
143985 GAAAACATCCTGCACTGAAGGTCTCATGGATGGCCCGGAGGACTTATGCATCAAGCTCTAAAGAC
194 GAAAACATCATGCACTAAAGGTCTCATGGATGGCCCGAAGGACTTACGCATCAAGCTCGAAAGAC
*
144050 TTACTGATGACCCGGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCAT
259 TTACTGATGACCCGGAGGAATTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCAT
144115 TTGAAAATATCCTGCACTGAAGGTCTTATGG
324 TTGAAAATATCCTGCACTGAAGGTCTTATGG
*
144146 ATGGCCCGAAGGACTTACACATCA
1 ATGGCCCGAAGGACTTACAAATCA
144170 TGCTCGAAAG
Statistics
Matches: 347, Mismatches: 29, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
353 3 0.01
354 344 0.99
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.25
Consensus pattern (354 bp):
ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTTAAATCTCATTTGAAA
ACATCCTACACTAAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTTAA
TGATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAAGCTTAGTTTCTAAAATATCATTTGA
AAACATCATGCACTAAAGGTCTCATGGATGGCCCGAAGGACTTACGCATCAAGCTCGAAAGACTT
ACTGATGACCCGGAGGAATTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTT
GAAAATATCCTGCACTGAAGGTCTTATGG
Found at i:144028 original size:132 final size:132
Alignment explanation
Indices: 143791--144426 Score: 990
Period size: 132 Copynumber: 4.8 Consensus size: 132
143781 AGGTCTTATG
* * * *
143791 GATGGCTCGAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTTTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
143856 AACATCCTGCACAGAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTA
143921 CT
131 CT
*
143923 GATGGCCCGGAGGGCTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
143988 AACATCCTGCACTGAAGGTCTCATGGATGGCCCGGAGGACTTATGCATCAAGCTCTAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTA
144053 CT
131 CT
* *
144055 GATGACCCGGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
144120 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTA
144185 CT
131 CT
* ** *
144187 AATGGCCTAGAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAAATGTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
144251 AACATCCTGCACTGAAGCTCTTATGGATGACCCGGAGGACTTACGCATCATGCTAGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTA
144316 CT
131 CT
* *
144318 GATGGACCGGAGGACTTACAAATCAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
144383 AGA-ATCCTGTACTGAAGGTCTTATGGATGGCCC-GACGGACTTAC
66 A-ACATCCTGCACTGAAGGTCTTATGGATGGCCCGGA-GGACTTAC
144427 AAATCAAGAA
Statistics
Matches: 458, Mismatches: 43, Indels: 6
0.90 0.08 0.01
Matches are distributed among these distances:
131 121 0.26
132 336 0.73
133 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.24
Consensus pattern (132 bp):
GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTA
CT
Found at i:144363 original size:263 final size:263
Alignment explanation
Indices: 143801--144432 Score: 1016
Period size: 263 Copynumber: 2.4 Consensus size: 263
143791 GATGGCTCGA
*
143801 AGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTTTAAAATCTCATTTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATCTCATTTGAAAA-ATCCTGC
* * * *
143866 ACAGAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
65 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTAATGGCCC
* *
143931 GGAGGGCTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
130 AGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
* * * **
143996 GCACTGAAGGTCTCATGGATGGCCCGGAGGACTTATGCATCAAGCTCTAAAGACTTACTGATGAC
195 GCACTGAAGCTCTCATGGATGACCCGGAGGACTTACGCATCAAGCTAGAAAGACTTACTGATGAC
144061 CCGG
260 CCGG
* *
144065 AGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAAAATATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATCTCATTTGAAAA-ATCCTGC
*
144130 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTAATGGCCT
65 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTAATGGCCC
*
144195 AGAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAAATGTCATTTGAAAACATCCT
130 AGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
* *
144259 GCACTGAAGCTCTTATGGATGACCCGGAGGACTTACGCATCATGCTAGAAAGACTTACTGATGGA
195 GCACTGAAGCTCTCATGGATGACCCGGAGGACTTACGCATCAAGCTAGAAAGACTTACTGAT-GA
144324 -CCGG
259 CCCGG
* *
144328 AGGACTTACAAATCAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATTTGAAAGAATCCTGT
1 AGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATCTCATTTGAAA-AATCCTGC
* *
144393 ACTGAAGGTCTTATGGATGGCCCGACGGACTTACAAATCA
65 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCA
144433 AGAAACCCCC
Statistics
Matches: 342, Mismatches: 24, Indels: 5
0.92 0.06 0.01
Matches are distributed among these distances:
263 198 0.58
264 144 0.42
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (263 bp):
AGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATCTCATTTGAAAAATCCTGCA
CTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTACTAATGGCCCA
GAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTG
CACTGAAGCTCTCATGGATGACCCGGAGGACTTACGCATCAAGCTAGAAAGACTTACTGATGACC
CGG
Found at i:144563 original size:89 final size:90
Alignment explanation
Indices: 144318--144613 Score: 409
Period size: 90 Copynumber: 3.2 Consensus size: 90
144308 AAGACTTACT
* * * *
144318 GATGGACCGGAGGACTTACAAATCAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
144383 AGA-ATCCTGTACTGAAGGTCTTATG
66 A-ACATCCTGCACTGAAGGTCTTATG
* *
144408 GATGGCCCGACGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTATATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
144473 AACATCCTGCACTGAAAGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
144498 GATGGCTCC-AAGGACTTA-AAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTTTATTTGA
1 GATGGC-CCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGA
*
144561 AAACATCATGCACTGAAGGTCTTATAGAAG
65 AAACATCCTGCACTGAAGGTCTTAT----G
144591 GACTGGCCCGAAGGACTTACAAA
1 GA-TGGCCCGAAGGACTTACAAA
144614 GCTTTGAAAA
Statistics
Matches: 183, Mismatches: 14, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
89 66 0.36
90 94 0.51
91 2 0.01
93 5 0.03
94 13 0.07
95 3 0.02
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:144661 original size:54 final size:57
Alignment explanation
Indices: 144556--144667 Score: 167
Period size: 54 Copynumber: 2.0 Consensus size: 57
144546 TTAAATTTTA
144556 TTTGAAAACATCATGCACTGAAGGTCTTATAGAAGGACTGGCCCGAAGGACTTACAAAGC
1 TTTGAAAACATCATGCACTGAAGGTCTTAT---AGGACTGGCCCGAAGGACTTACAAAGC
*
144616 TTTGAAAACATCTTG-ACTGAAGGTCTTAT-GGA-TGGCCCGAAGGACTTACAAA
1 TTTGAAAACATCATGCACTGAAGGTCTTATAGGACTGGCCCGAAGGACTTACAAA
144668 TCAAGAAACC
Statistics
Matches: 51, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
54 20 0.39
55 3 0.06
59 14 0.27
60 14 0.27
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (57 bp):
TTTGAAAACATCATGCACTGAAGGTCTTATAGGACTGGCCCGAAGGACTTACAAAGC
Found at i:144940 original size:90 final size:90
Alignment explanation
Indices: 144616--145469 Score: 733
Period size: 90 Copynumber: 9.6 Consensus size: 90
144606 CTTACAAAGC
*
144616 TTTGAAAACATCTTG-ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCC
1 TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCC
*
144680 CGAAGGCTTAGTTTCTAAAATCTCA
66 CGAAGGCTTAGTTTCTTAAATCTCA
* * * *
144705 TTTGAAAACTTCCTGCAGTGAATGTCTTATGGATGGCCCGAAGGACTTACAAATAAAGAAACCCC
1 TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCC
*
144770 CGAAGGCTTAGTTTCTTAAAATTTCA
66 CGAAGGCTTAGTTTCTT-AAATCTCA
*
144796 TTTGAAAACATCCTGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCC
1 TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCC
144861 CGAAGGCTTAGTTTCTTAAATCTCA
66 CGAAGGCTTAGTTTCTTAAATCTCA
* * * * *
144886 TTTGAAAACATCCTGCACTGAGGGTCTTATGGGTGGCCCGAAGGACTGATAAATCATGCTCGAAA
1 TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA----AG-AA
** * ** ** *
144951 GACTTACCGATGGCCCGGAG-GACTTACAA-ATCA
61 -AC-CCCCGAAGG--CTTAGTTTCTTA-AATCTCA
* ** ** ** *
144984 --AG-AAAC--CC--C-C-GAAGG-CTTA--G-T-TTCTTAA--A-TCT-CATTTGAA-AACATC
1 TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACT-TACAAATCAAGAA-A-C
* ** *** **
145030 CTGCACTGAAGGTCTTATGGATGGCCCGAA--GGA
63 C--C-CCGAAGG-CTTA--G-TTTCTTAAATCTCA
* * * * * * *
145063 ATT--ACACATCATGCTC-GAAAGACTTACT-GATGGCCC-AGAGGACTTACAAATCAAGAAAAC
1 TTTGAAAACATCCTGCACTGAAGGTCTTA-TGGATGGCCCGA-AGGACTTACAAATCAAGAAACC
* * *
145123 CCCAAAGGCTTAGTTTCTAAAATATCA
64 CCCGAAGGCTTAGTTTCTTAAATCTCA
* * * *
145150 TTTGAAAATATCCTGCACAGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACTCC
1 TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCC
*
145215 TGAAGGCTTAGTTTCTTAAATCTCA
66 CGAAGGCTTAGTTTCTTAAATCTCA
* * * *
145240 TTTGAAAGCATCCTGCACTGAAAGTTTTATGGATGACCCGAAGGACTTACAAATCAAGAAA-CCC
1 TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCC
*
145304 CGAAGGCTTAGTTTCTTAAAATTTCA
66 CGAAGGCTTAGTTTCTT-AAATCTCA
* *
145330 TTTGAAAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCT
1 TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCC
*
145395 CGAAGCCTTAGTTTCTTAAATCTCA
66 CGAAGGCTTAGTTTCTTAAATCTCA
*
145420 TTTGAAAACATCCTGCACTAAAGGTCTTATGGATGGCCCGAAGGACTTAC
1 TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
145470 GCATCATGAT
Statistics
Matches: 612, Mismatches: 105, Indels: 95
0.75 0.13 0.12
Matches are distributed among these distances:
75 3 0.00
76 1 0.00
77 2 0.00
78 5 0.01
79 2 0.00
80 5 0.01
81 6 0.01
82 2 0.00
84 4 0.01
85 10 0.02
86 6 0.01
87 3 0.00
88 9 0.01
89 52 0.08
90 356 0.58
91 104 0.17
92 3 0.00
93 9 0.01
94 3 0.00
95 6 0.01
96 3 0.00
97 6 0.01
98 7 0.01
99 5 0.01
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (90 bp):
TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCC
CGAAGGCTTAGTTTCTTAAATCTCA
Found at i:145074 original size:132 final size:132
Alignment explanation
Indices: 144827--148136 Score: 1912
Period size: 132 Copynumber: 24.9 Consensus size: 132
144817 AGGTCTTATG
*
144827 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * * *
144892 AACATCCTGCACTGAGGGTCTTATGGGTGGCCCGAAGGACTGATAAATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
*
144957 CC
131 CT
144959 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
145024 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACACATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
145089 CT
131 CT
* * * * *
145091 GATGGCCCAGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * ** *
145156 AATATCCTGCACAGAAGGTCTTATGGATGACCCGAAGGACTTACA-A--AT-CAAG-AA-AC-TC
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
145214 CT
131 CT
* ** ** * * ** **
145216 GAAGG--CTTAGTTTCTTA-AATCTCATTTGAAAGCATCCTGCACTGAAAGTTTTATGGATGACC
1 GATGGCCCGGAG-GACTTACAA-ATCA--AGAAA-C--CC--C-C-G-AAGGCTTA--G-T-TTC
** ** * ** *** ** *
145278 CGAAGGA-CTTACAAATCAAGAA-A-CC--C-C-GAAGG-CTTA--G-TTTCTTAAAATTTCATT
50 TTAA--ATC-T-CATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGC-CCGAA--GGACT
* * * *
145332 TGAAAACATCATGCACTGAAGGTCTTA-T
107 T--ACACATCATGCTC-GAAAGACTTACT
* * *
145360 GGATGGCCCGAAGGACTTACAAATCAAGAAACCCTCGAAGCCTTAGTTTCTTAAATCTCATTTGA
1 -GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGA
* * *
145425 AAACATCCTGCACTAAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGATCGAAAGACTT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTT
*
145490 AAT
130 ACT
* * * * * *
145493 GATGGCCCAGAGGACTTATAAATCAAGAAACCCCTGAAGGCTTGGTTTCTAAAATATCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * * * *
145558 AATATCCTACACTAAAGGTTTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
145623 CT
131 CT
* * * * *
145625 GATGTCCTGGAGGACTTACAAATCAAGAAGCCCCCGAAAGCTTTGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * *
145690 AACATCCTGCACTGATGGTCTTATGGATGGCCTGAAGGACTTACAAATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
145755 CT
131 CT
* *** *
145757 GATGGCCCGAAGGACTTACAAATCAAGAAACCCGTAAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * *
145822 AATATCCTGCAATGAAGGTATTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
145887 CT
131 CT
* * *
145889 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCTGAACGCTTAGTTT-TTAAAATCTCATTTGA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* * *
145953 AAACATCCAGCACTGAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTT
146018 ACT
130 ACT
* * * * *
146021 AATGGCCTGGAGGACTTACAAATCAAGAAACCCTCGAAGGCTTAGTTTCTTAAAATTTGATTTGA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* * ** ** *
146086 AAACATCATGCACTGAAGGTCTTATAGATAACCCGAAGGACTTACA-A--AT-CAAG-AA-AC-C
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTT
* *
146144 CCC
130 ACT
* ** ** * * * ** **
146147 GAAGG--CTTAGTTTCTTA-AATCTCATTTGAAAACATCCTGACTGAAGGTCTTATGGATGGCCC
1 GATGGCCCGGAG-GACTTACAA-ATCA--AG-AAAC--CC---CCGAAGG-CTTA--G-TTTCTT
* ** * * * * *** * *
146209 GAA--GGACTT-ACAA-ATCATGCTC-GAAACACTTATTGATGGCCCGGAGGACTTACA-A--AT
52 AAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCAT
** ** *
146266 -CAAG-AA-AC-CCCC
117 GCTCGAAAGACTTACT
* ** ** * * *
146278 GAAGG--CTTA-GTTTCTA-AAATCTCATTTGAAAACATCCTGCATTGAAGGTCTTATGGATGGC
1 GATGGCCCGGAGGACT-TACAAA--TCA--AG-AAAC--CC--C--CGAAGG-CTTA--G-T--T
* ** * ** * * ** *** ** *
146339 CCGGAGGA-CTTACAAAT-AAAGA-AACC--C-CCGAAGG-CTTA--G-TTTCTTAAAATTTCAT
48 TCTTA-AATC-T-CATTTGAAA-ACATCCTGCACTGAAGGTCTTATGGATGGC-CCGAA--GGAC
* * * * *
146394 TTGAAAACATCCTGCACGGAAGGTCTTA-T
106 TT--ACACATCATGCTC-GAAAGACTTACT
* *
146423 GGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTACTTTCTTAAATCTCATTTGA
1 -GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGA
* * *
146488 AAACATCCTGCACTGAGGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCAAAAGACTT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTT
*
146553 ACC
130 ACT
*
146556 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * *
146621 ATCATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
146686 CT
131 CT
* * * * * *
146688 GATGGCCCAGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTTGTTTCTAAAATATCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * * ** *
146753 AATATCCTGCACGGAAGGTCTTAGGGATGACCCGAAGGACTTACA-A--AT-CAAG-AA-ACCT-
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
*
146811 CC
131 CT
* ** ** * * ** *
146813 GAAGG--CTTAGTTTCTTA-AATCTCATTTGAAAACATCCTCCACTGAAAGTTTTATGGATGTCC
1 GATGGCCCGGAG-GACTTACAA-ATCA----AGAA-A-CC-CC-C-G-AAGGCTTA--G-T-TTC
** ** * * ** ** *** ** *
146875 CGAAGGA-CTTACAAAT-AAAGA-AACC--C-CCGAA-GAATTA--G-TTTCTTAAAATTTCATT
50 TTAA--ATC-T-CATTTGAAA-ACATCCTGCACTGAAGGTCTTATGGATGGC-CCGAA--GGACT
* * * * *
146930 TGAAAACATCCTGCACGGAAGGTCTTA-T
107 T--ACACATCATGCTC-GAAAGACTTACT
** *
146958 GGATGGCCCAAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTTATTTGA
1 -GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGA
* *
147023 AAACATCCTGCACTGAGGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTT
*
147088 ACC
130 ACT
* * *
147091 GATGGCTCGAAGGACTTACAAATCAGGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * *
147156 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCTTCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
147221 CT
131 CT
* * * * * * *
147223 GATGGCCCAGAGGACTTAGAAATCAAGAAAACCCCAAAGGATTAGTTTCTAAAATATCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * * * *
147288 AATATCCTGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCG-AAG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATG-----CTCGAAAG
*
147352 GCTTA--
126 ACTTACT
** * * ** * * ** **
147357 G-T--TTCGTA--AATCT-CATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAG
1 GATGGCCCGGAGGACT-TACAAATCAAGAA-A-CC--C-CCGAAGG-CTTA--G-T-TTCTTAA-
** * * ** *** ** * *
147415 GA-CTTACAAATCAAGAA-A-CC--C-CCGAAGG-CTTA--G-TTTCTTAAAATTTCATTTGAAA
54 -ATC-T-CATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGC-CCGAA--GGACTT--AC
* * * *
147470 ACATCGTGCACTGAAGGTCTTA-T
110 ACATCATGCTC-GAAAGACTTACT
* * **
147493 GGATGGCCCGAAGGACTTACAAATGAAGAAACCGTCGAAGGCTTAGTTTCTTAAATCTCATTTGA
1 -GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGA
*
147558 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTT
*
147623 AAT
130 ACT
* * * * * * *
147626 GATGGCCCAGAGGACTTATAAATCAAGAAACCCTCGAAGGCTTGGATTCTAAAATATCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * * *
147691 AATATCCTGCACTAAAGCTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
147756 CT
131 CT
* * * * * *
147758 GATGGCCTGGAGGACTTACAAATCAAGATACCCTCGAAAGCATAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * *
147823 AACATCCTGCACTGAAGGTCTTATAGATGGCCCGGAGGACTTACGCATCATGCTCGAAACACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
*
147888 TT
131 CT
* * **
147890 GATGGCCCGGAGGACTTACAAATCAAGAAACCCGCAAAGGCTTAGTTTCAAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
147955 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
148020 CT
131 CT
* * * *
148022 GATGGCCCAGAGGACTTACAAATAAAGCAACCCCCGAACGCTTAGTTT-TTAAAATCTCATTTGA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* * *
148086 AAACTTCCTGCACTGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCA
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCA
148137 AGAAACCACC
Statistics
Matches: 2453, Mismatches: 519, Indels: 412
0.72 0.15 0.12
Matches are distributed among these distances:
123 10 0.00
124 18 0.01
125 19 0.01
126 13 0.01
127 7 0.00
128 17 0.01
129 26 0.01
130 29 0.01
131 94 0.04
132 1691 0.69
133 130 0.05
134 55 0.02
135 44 0.02
136 46 0.02
137 53 0.02
138 49 0.02
139 6 0.00
140 24 0.01
141 27 0.01
142 21 0.01
143 9 0.00
144 12 0.00
145 9 0.00
146 15 0.01
147 15 0.01
148 9 0.00
149 5 0.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (132 bp):
GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
CT
Found at i:145197 original size:222 final size:216
Alignment explanation
Indices: 144646--145306 Score: 603
Period size: 222 Copynumber: 3.0 Consensus size: 216
144636 AGGTCTTATG
* * *
144646 GATGGCCC-GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
1 GATGGCCCAG-AGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGA
* * *
144710 AAACT-TCCTGCAGTGAATGTCTTATGGATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAA
65 AAA-TATCCTGCA-CGAAAGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAA
* *
144774 GGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACGGAAGGTCTTATGGATGGCCCGAAG
128 GGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAG
*
144839 GACTTACAA--ATCAAGAAACCCCC
192 GACTTACAATCATCAAGAAACCACC
* ** *** * * * ** *
144862 GAAGGCTTAG-TTTCTTA-AATCTCATTTGAAAACATCCTGCACTGAGGGTCTTATGGGTGGCCC
1 GATGGCCCAGAGGACTTACAA-ATCA--AGAAAAC--CC--CA---AAGG-CTTA---GT-TTCT
* ** * * * * ** *
144925 GAAGGA-C---TGATAA-ATCATGCTCGAAAGACTTACCGATGGCCCGGAGGACTTACAAATCAA
51 AAAATATCATTTGAAAATATCCTGCACGAAAGTCTTATGGATGGCCCGAAGGACTTACAAATCAA
144985 GAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGG
116 GAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGG
* ** * *
145050 ATGGCCCGAAGGAATTACACATCATGCTCGAAAGACTTACT
181 ATGGCCCGAAGGACTTACA-ATCAT-CAAG-AA-AC-CACC
145091 GATGGCCCAGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAA
* * * *
145156 AATATCCTGCACAGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACTCCTGAAGG
66 AATATCCTGCAC-GAAAGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
* * * *
145221 CTTAGTTTCTTAAATCTCATTTGAAAGCATCCTGCACTGAAAGTTTTATGGATGACCCGAAGGAC
130 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAC
145286 TTACAA--ATCAAGAAACC-CC
195 TTACAATCATCAAGAAACCACC
145305 GA
1 GA
145307 AGGCTTAGTT
Statistics
Matches: 342, Mismatches: 71, Indels: 66
0.71 0.15 0.14
Matches are distributed among these distances:
214 5 0.01
215 7 0.02
216 11 0.03
217 11 0.03
218 2 0.01
219 4 0.01
220 9 0.03
221 12 0.04
222 165 0.48
223 58 0.17
224 10 0.03
225 11 0.03
226 4 0.01
227 2 0.01
228 11 0.03
229 11 0.03
230 7 0.02
231 2 0.01
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.25
Consensus pattern (216 bp):
GATGGCCCAGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAA
AATATCCTGCACGAAAGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGC
TTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACT
TACAATCATCAAGAAACCACC
Found at i:146438 original size:91 final size:91
Alignment explanation
Indices: 146237--146538 Score: 509
Period size: 90 Copynumber: 3.3 Consensus size: 91
146227 GCTCGAAACA
* *
146237 CTTATTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATCTC
1 CTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTC
*
146301 ATTTGAAAACATCCTGCATTGAAGGT
66 ATTTGAAAACATCCTGCACTGAAGGT
* * *
146327 CTTATGGATGGCCCGGAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTC
1 CTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTC
*
146392 ATTTGAAAACATCCTGCACGGAAGGT
66 ATTTGAAAACATCCTGCACTGAAGGT
*
146418 CTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTACTTTCTT-AAATCTC
1 CTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTC
*
146482 ATTTGAAAACATCCTGCACTGAGGGT
66 ATTTGAAAACATCCTGCACTGAAGGT
146508 CTTATGGATGGCCCGAAGGACTTACAAATCA
1 CTTATGGATGGCCCGAAGGACTTACAAATCA
146539 TGCTCAAAAG
Statistics
Matches: 200, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
90 114 0.57
91 86 0.43
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (91 bp):
CTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTC
ATTTGAAAACATCCTGCACTGAAGGT
Found at i:146794 original size:222 final size:223
Alignment explanation
Indices: 145899--146890 Score: 1063
Period size: 222 Copynumber: 4.5 Consensus size: 223
145889 GATGGCCCAG
* * *
145899 AGGACTTACAAATCAAGAAACCCCTGAACGCTTAGTTT-TTAAAATCTCATTTGAAAACATCCAG
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTG
* ** *
145963 CACTGAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTAATGGCC
65 CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGATGGCC
** * * *
146028 TGGAGGACTTACAAATCAAG-AAACCCTCGAAGGCTTAGTTTCTTAAAATTTGATTTGAAAACAT
130 CAGAGGACTTACAAATCAAGAAAACCCACGAAGGCTTAGTTTC-TAAAATATCATTTGAAAACAT
* *
146092 CATGCACTGAAGGTCTTATAGATAACCCGA
194 CATGCACTGAAGGTCTTATGGATGACCCGA
146122 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTG-
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
* *
146186 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAACACTTATTGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGATGGCCC
* * * *
146251 GGAGGACTTACAAATCAAG-AAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCC
131 AGAGGACTTACAAATCAAGAAAACCCACGAAGGCTTAGTTTCTAAAATATCATTTGAAAACATCA
* * *
146315 TGCATTGAAGGTCTTATGGATGGCCCGG
196 TGCACTGAAGGTCTTATGGATGACCCGA
* *
146343 AGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTG
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTG
* * * *
146408 CACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCG-AAGGCTTACT--
65 CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATG-----CTCGAAAGACTTACTGA
* ** ** * * * ** ** **
146470 T-TCTTA-A--A-TCT-CATTTGAA-AACATCCTGCACTGAGGGTCTTATGGATGGCCCGAAGGA
125 TGGCCCAGAGGACT-TACAAATCAAGAA-AACC--CAC-GAAGG-CTTA--G-T-TTCTAAAATA
* * * * * ** * *
146528 -C--TT-ACAA-ATCATGCTC-AAAAGACTTACCGATGGCCCGG
180 TCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGACCCGA
* *
146566 AGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAATCTCATTTGAAATCATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
* **
146631 ACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCTCGAAAGACTTACTGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGATGGCCC
* * * *
146696 AGAGGACTTACAAATCAAGAAAACCC-CAAAGGCTTTGTTTCTAAAATATCATTTGAAAATATCC
131 AGAGGACTTACAAATCAAGAAAACCCACGAAGGCTTAGTTTCTAAAATATCATTTGAAAACATCA
* *
146760 TGCACGGAAGGTCTTAGGGATGACCCGA
196 TGCACTGAAGGTCTTATGGATGACCCGA
* *
146788 AGGACTTACAAATCAAGAAACCTCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTCC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
* * *
146853 ACTGAAAGTTTTATGGATGTCCCGAAGGACTTACAAAT
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAAT
146891 AAAGAAACCC
Statistics
Matches: 634, Mismatches: 100, Indels: 71
0.79 0.12 0.09
Matches are distributed among these distances:
216 4 0.01
217 5 0.01
218 10 0.02
219 2 0.00
220 14 0.02
221 100 0.16
222 289 0.46
223 158 0.25
224 15 0.02
225 17 0.03
226 4 0.01
227 8 0.01
228 5 0.01
229 3 0.00
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (223 bp):
AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGATGGCCC
AGAGGACTTACAAATCAAGAAAACCCACGAAGGCTTAGTTTCTAAAATATCATTTGAAAACATCA
TGCACTGAAGGTCTTATGGATGACCCGA
Found at i:146871 original size:90 final size:90
Alignment explanation
Indices: 146688--147602 Score: 763
Period size: 90 Copynumber: 10.2 Consensus size: 90
146678 AAGACTTACT
* * * * *
146688 GATGGCCC-AGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTTGTTTCTAAAATATCATTTGA
1 GATGGCCCGA-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGA
* *
146752 AAATATCCTGCACGGAAGGTCTTAGG
65 AAACATCCTGCACGGAAGGTCTTATG
* *
146778 GATGACCCGAAGGACTTACAAATCAAGAAACCTCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * *
146843 AACATCCTCCACTGAAAGTTTTATG
66 AACATCCTGCACGGAAGGTCTTATG
* * ** *
146868 GATGTCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGAATTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
146933 AAACATCCTGCACGGAAGGTCTTATG
65 AAACATCCTGCACGGAAGGTCTTATG
* *
146959 GATGGCCCAAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTTATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
147024 AACATCCTGCACTGAGGGTCTTATG
66 AACATCCTGCACGGAAGGTCTTATG
* ** * * **
147049 GATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACCGATGGCTCGAAG-GACTTACAA-
1 GATGGCCCGAAGGACTTACAAATCA----AG-AA-AC-CCCCGAAGGCT--TAGTTTCTTA-AAT
* *
147112 ATCA---GGAAAC--CC--C-C-GAAGG-CTTA--
56 CTCATTTGAAAACATCCTGCACGGAAGGTCTTATG
** ** ** * * ** ***
147135 G-T-TTCTTAA--A-TCT-CATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAA-
1 GATGGCCCGAAGGACT-TACAAATCAAGAA-A-CC--C-CCGAAGG-CTTA--G-TTTCTTAAAT
** * ** * * * * *
147192 -GGAATT--ACGCTTCATGCTC-GAAAGACTTACT-
56 CTCATTTGAAAACATCCTGCACGGAAGGTCTTA-TG
* * * * * *
147223 GATGGCCC-AGAGGACTTAGAAATCAAGAAAACCCCAAAGGATTAGTTTCTAAAATATCATTTGA
1 GATGGCCCGA-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGA
*
147287 AAATATCCTGCACGGAAGGTCTTATG
65 AAACATCCTGCACGGAAGGTCTTATG
* *
147313 GATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCGTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
147378 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACGGAAGGTCTTATG
*
147403 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* *
147468 AAACATCGTGCACTGAAGGTCTTATG
65 AAACATCCTGCACGGAAGGTCTTATG
* **
147494 GATGGCCCGAAGGACTTACAAATGAAGAAACCGTCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
147559 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACGGAAGGTCTTATG
147584 GATGGCCCGAAGGACTTAC
1 GATGGCCCGAAGGACTTAC
147603 GCATCATGCT
Statistics
Matches: 662, Mismatches: 114, Indels: 98
0.76 0.13 0.11
Matches are distributed among these distances:
75 3 0.00
76 1 0.00
77 1 0.00
78 5 0.01
79 4 0.01
80 4 0.01
81 7 0.01
82 3 0.00
84 4 0.01
85 10 0.02
86 6 0.01
87 3 0.00
88 8 0.01
89 19 0.03
90 375 0.57
91 168 0.25
92 3 0.00
93 8 0.01
94 3 0.00
95 7 0.01
96 2 0.00
97 8 0.01
98 6 0.01
99 4 0.01
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACGGAAGGTCTTATG
Found at i:146898 original size:535 final size:535
Alignment explanation
Indices: 146237--150622 Score: 4980
Period size: 535 Copynumber: 8.1 Consensus size: 535
146227 GCTCGAAACA
* * * *
146237 CTTATTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCA
1 CTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCA
* *
146302 TTTGAAAACATCCTGCATTGAAGGTCTTATGGATGGCCCGGAGGACTTACAAATAAAGAAACCCC
66 TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATAAAGAAACCCC
146367 CGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACGGAAGGTCTTATGGATGGCCC
131 CGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACGGAAGGTCTTATGGATGGCCC
*
146432 GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTACTTTCTTAAATCTCATTTGAAAACATCCT
196 GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCT
*
146497 GCACTGAGGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCAAAAGACTTACCGATGGC
261 GCACTGAGGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACCGATGGC
146562 CCGGAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAATCTCATTTGAAATCATC
326 CCGGAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAATCTCATTTGAAATCATC
146627 CTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCTCGAAAGACTTACTGATG
391 CTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCTCGAAAGACTTACTGATG
*
146692 GCCCAGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTTGTTTCTAAAATATCATTTGAAAATA
456 GCCCAGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAAAATA
146757 TCCTGCACGGAAGGT
521 TCCTGCACGGAAGGT
* *
146772 CTTAGGGATGACCCGAAGGACTTACAAATCAAGAAACCTCCGAAGGCTTAGTTTCTTAAATCTCA
1 CTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCA
* * * *
146837 TTTGAAAACATCCTCCACTGAAAGTTTTATGGATGTCCCGAAGGACTTACAAATAAAGAAACCCC
66 TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATAAAGAAACCCC
**
146902 CGAAGAATTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACGGAAGGTCTTATGGATGGCCC
131 CGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACGGAAGGTCTTATGGATGGCCC
* *
146967 AAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTTATTTGAAAACATCCT
196 GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCT
147032 GCACTGAGGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACCGATGGC
261 GCACTGAGGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACCGATGGC
* * * * *
147097 TCGAAGGACTTACAAATCAGGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATC
326 CCGGAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAATCTCATTTGAAATCATC
*
147162 CTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCTTCATGCTCGAAAGACTTACTGATG
391 CTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCTCGAAAGACTTACTGATG
* *
147227 GCCCAGAGGACTTAGAAATCAAGAAAACCCCAAAGGATTAGTTTCTAAAATATCATTTGAAAATA
456 GCCCAGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAAAATA
147292 TCCTGCACGGAAGGT
521 TCCTGCACGGAAGGT
*
147307 CTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCGTAAATCTCA
1 CTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCA
*
147372 TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCC
66 TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATAAAGAAACCCC
* *
147437 CGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCGTGCACTGAAGGTCTTATGGATGGCCC
131 CGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACGGAAGGTCTTATGGATGGCCC
* **
147502 GAAGGACTTACAAATGAAGAAACCGTCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCT
196 GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCT
* ** **
147567 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTAATGATGGC
261 GCACTGAGGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACCGATGGC
* * * * * *
147632 CCAGAGGACTTATAAATCAAGAAA-CCCTCGAAGGCTTGGATTCTAAAATATCATTTGAAAAT-A
326 CCGGAGGACTTACAAATCAAGAAACCCCT-GAAGGCTTAGTTTCTTAAATCTCATTTG-AAATCA
* * **
147695 TCCTGCACTAAAGCTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTTACTGA
389 TCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCTCGAAAGACTTACTGA
** * * *
147760 TGGCCTGGAGGACTTACAAATCAAG-ATACCCTCGAAA-GCATAGTTTCTAAAATCTCATTTGAA
454 TGGCCCAGAGGACTTACAAATCAAGAAAACCC-C-AAAGGCTTAGTTTCTAAAATATCATTTGAA
* *
147823 AACATCCTGCACTGAAGGT
517 AATATCCTGCACGGAAGGT
* * * * ** *
147842 CTTATAGATGGCCCGGAGGACTTACGCATCATGCTCGAAACACTTATTGATGGCCCGGAGGACTT
1 CTTATGGATGACCCGAAGGACTTA--CA-AAT-CAAGAAAC-C----------CCCGAAGG-C-T
*** ** * * * ** *
147907 ACAAATCAAGAAACCCGCAAAGGCTTAGTTTCAAAA-ATCTCATTTGAAAATATCCTGCACTGAA
49 -----T--AG--TTTCTTAAA-TCTCA-TTTGAAAACATC-C--TGCAC------------TGAA
147971 GGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATACTGATGGCCCAGAGGA
88 GGTCTTATGGATGGCCCGAAGGACTTACA-A--A---T--AAAG--A-A---A---CCC------
* * *
148036 CTTACAAATAAAGCAACCCCCGAACGCTTAGTTT-TTAAAATCTCATTTGAAAACTTCCTGCACT
130 C---C-------G-AA-----G---GCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACG
* * *
148100 GAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCACCGAAGGCTTAGTTTTTTAA
176 GAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAA
* * * * * * ** *
148165 ATCTCATTTGAAAACATCATACAATGAAGGCCTTATGGATGTCCCGAAGGACTTACGCATCATGT
241 ATCTCATTTGAAAACATCCTGCACTGAGGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGC
* * * * *
148230 TCGAAAGACTTACAGATGGCCCGGAGGACCTACAAATCAAGAAACCCCCGAATGCTTAGTTTCTA
306 TCGAAAGACTTACCGATGGCCCGGAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTT
* * *
148295 AAATCTCATTTGAAAGCATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTA--CA-AAT
371 AAATCTCATTTGAAATCATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCAT
** ** * * ** *** * * *
148357 -CAAG-AA-AC-CCCCGAAGGCTTAG-TTTCTTA-AATCTCATTTGAAAACATCCTGACTGAAGG
436 GCTCGAAAGACTTACTGATGGCCCAGAGGACTTACAA-ATCA--AGAAAAC--CC---C-AAAGG
** ** ** * * * ***
148416 TCTTATGGATGGCCCGAAGGA-C--TT-ACAA-ATCATGCTC-GAAACA
492 -CTTA--G-T-TTCTAAAATATCATTTGAAAATATCCTGCACGGAAGGT
* * * *
148459 CTAACT-GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTC
1 CTTA-TGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTC
* * * *
148523 ATTTGAAAAGATCCTGCACTGAAGGTCTTATGGATGACCCGGAGGACTTAAAAATAAAGAAACCC
65 ATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATAAAGAAACCC
* *
148588 CCGAAGGTTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGTACGGAAGGTCTTATGGATGGCC
130 CCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACGGAAGGTCTTATGGATGGCC
*
148653 CGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACGTCC
195 CGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCC
148718 TGCACTGAGGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACCGATGG
260 TGCACTGAGGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACCGATGG
* * *
148783 CCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACAT
325 CCCGGAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAATCTCATTTGAAATCAT
148848 CCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCTCGAAAGACTTACTGAT
390 CCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCTCGAAAGACTTACTGAT
* *
148913 GGACCAGAGGACTTACAAATCAAGAAAACGCCAAAGGCTTAGTTTCTAAAATATCATTTGAAAAT
455 GGCCCAGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAAAAT
**
148978 ATCCTGCATAGAAGGT
520 ATCCTGCACGGAAGGT
*
148994 CTTATGGATGACCCGAAGAACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCA
1 CTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCA
* * * *
149059 TTTGAAAACATCCTGCACTGAAAGTTTTATGGATGGCTCGGAGGACTTACAAATAAAGAAACCCC
66 TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATAAAGAAACCCC
* * * *
149124 CGATGGCTTATTTTCTTAAAATTTCATTTGAAAACATCTTGCACGGAAGGTCTTTTGGATGGCCC
131 CGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACGGAAGGTCTTATGGATGGCCC
149189 GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCT
196 GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCT
* *
149254 GCACTGAAGGTCTTATGGATGTCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACCGATGGC
261 GCACTGAGGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACCGATGGC
* * *
149319 CAGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATC
326 CCGGAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAATCTCATTTGAAATCATC
*
149384 CTGCACTGAAGGTCATATGGATGGCCCGAAGGAATTACGCATCATGCTCGAAAGACTTACTGATG
391 CTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCTCGAAAGACTTACTGATG
149449 GCCCAGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAAAATA
456 GCCCAGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAAAATA
149514 TCCTGCACGGAAGGT
521 TCCTGCACGGAAGGT
* *
149529 CTTATGGATGACCTGAAAGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCA
1 CTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCA
* * * * *
149594 TTTGAAAACATCCTGCACTGAAAGTTTTATGGATGGCCCCAAGGACATACAAATCAAGAAACCCC
66 TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATAAAGAAACCCC
* *
149659 CGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGGCCC
131 CGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACGGAAGGTCTTATGGATGGCCC
**
149724 GAAGGACTTACAAATCAAGAAACCGTCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCT
196 GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCT
* ** **
149789 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTAATGATGGC
261 GCACTGAGGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACCGATGGC
* * * * * *
149854 CCAGAGGACTTATAAATCAAGAAACCCCCGAAGGCTTGGTTTCTAAAATATCATTTGAAAAT-AT
326 CCGGAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAATCTCATTTG-AAATCAT
* **
149918 CCTGCACTAAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTTACTGAT
390 CCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCTCGAAAGACTTACTGAT
** * *
149983 GGCCTGGAGGACTTACAAATCAAGAAACCCCCGAAA-GCTTAGTTTCTAAAATCTCATTTGAAAA
455 GGCCCAGAGGACTTACAAATCAAGAAAACCCC-AAAGGCTTAGTTTCTAAAATATCATTTGAAAA
* *
150047 CATCCTGCACTGAAGGT
519 TATCCTGCACGGAAGGT
* * * ** ** * * ** **
150064 CTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCGGAG-GACT
1 CTTATGGATGACCCGAAGGACTTA--CA-AAT-CAAG-AA-AC-CCCCGAAGG--CTTAGTTTCT
* * * * * **
150128 TACAA-ATCA--AG-AAAC--CC-GCA---AAGG-CTTACT---T---TCTAA--AATCT-CATT
57 TA-AATCTCATTTGAAAACATCCTGCACTGAAGGTCTTA-TGGATGGCCCGAAGGACT-TACAAA
* * ** *** ** * * * *
150173 TGAAA-ATATCCTGCACAGAAGGTCTTATGGATGGC-CCGAA--GGACTT--ACACATCATGCTC
119 T-AAAGA-AACC--C-CCGAAGG-CTTA--G-TTTCTTAAAATTTCATTTGAAAACATCCTGCAC
* * * * *
150232 -GAAAGACATACT-GATGGCCC-AGAGGACTTACAAATCAAGAAACCTCCGAACGCTTAGTTT-T
175 GGAAGGTCTTA-TGGATGGCCCGA-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCT
* * **
150293 TAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGACCCGAAGGACTTACGCATC
238 T-AAATCTCATTTGAAAACATCCTGCACTGAGGGTCTTATGGATGGCCCGAAGGACTTACAAATC
* * * *
150358 ATGCTCGAAAGACTTACTGATGGCCTGGAGGACTTACAAATCAAAAAACACCC-GAAAGCTTAGT
302 ATGCTCGAAAGACTTACCGATGGCCCGGAGGACTTACAAATCAAGAAAC-CCCTGAAGGCTTAGT
* * * * *
150422 TTCTAAAATCTCATTTTAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGC
366 TTCTTAAATCTCATTTGAAATCATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGC
* *
150487 ATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAAA-CCGAGAAGGCTT
431 ATCATGCTCGAAAGACTTACTGATGGCCCAGAGGACTTACAAATCAAGAAAACCCCA-AAGGCTT
* **
150551 AGTTTCTAAAATCTCATTTGAAAATATCCTGCATTGAAGGT
495 AGTTTCTAAAATATCATTTGAAAATATCCTGCACGGAAGGT
* *
150592 CTTATGGATGGCCCGAAGGACTTACACATCA
1 CTTATGGATGACCCGAAGGACTTACAAATCA
150623 TGCTCGGAAG
Statistics
Matches: 3342, Mismatches: 355, Indels: 319
0.83 0.09 0.08
Matches are distributed among these distances:
524 1 0.00
525 3 0.00
526 8 0.00
527 16 0.00
528 339 0.10
529 20 0.01
530 8 0.00
531 9 0.00
532 2 0.00
533 21 0.01
534 283 0.08
535 2019 0.60
536 15 0.00
537 9 0.00
538 9 0.00
539 10 0.00
540 15 0.00
541 12 0.00
542 13 0.00
543 9 0.00
544 5 0.00
549 1 0.00
550 7 0.00
551 1 0.00
552 2 0.00
557 1 0.00
558 3 0.00
559 2 0.00
561 6 0.00
562 6 0.00
563 8 0.00
564 1 0.00
565 3 0.00
567 4 0.00
569 1 0.00
572 1 0.00
574 1 0.00
575 30 0.01
577 33 0.01
578 1 0.00
580 1 0.00
583 1 0.00
585 3 0.00
587 3 0.00
588 1 0.00
589 8 0.00
590 6 0.00
591 5 0.00
593 2 0.00
594 3 0.00
595 1 0.00
600 2 0.00
601 1 0.00
602 7 0.00
603 1 0.00
609 2 0.00
610 8 0.00
611 10 0.00
612 4 0.00
613 11 0.00
614 4 0.00
615 6 0.00
616 3 0.00
617 30 0.01
618 255 0.08
619 18 0.01
620 2 0.00
621 1 0.00
622 2 0.00
623 3 0.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (535 bp):
CTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCA
TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATAAAGAAACCCC
CGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACGGAAGGTCTTATGGATGGCCC
GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCT
GCACTGAGGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACCGATGGC
CCGGAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAATCTCATTTGAAATCATC
CTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCTCGAAAGACTTACTGATG
GCCCAGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAAAATA
TCCTGCACGGAAGGT
Found at i:147050 original size:181 final size:181
Alignment explanation
Indices: 146688--147602 Score: 850
Period size: 181 Copynumber: 5.1 Consensus size: 181
146678 AAGACTTACT
* * *
146688 GATGGCCC-AGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTTGTTTC-TAAAATATCATTTG
1 GATGGCCCGA-AGGACTTACAAATCAAGAAAACCCCGAAGGCTTAGTTTCTTAAAATTTCATTTG
* * *
146751 AAAATATCCTGCACGGAAGGTCTTAGGGATGACCCGAAGGACTTACAAATCAAGAAACCTCCGAA
65 AAAACATCCTGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAA
* * *
146816 GGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTCCACTGAAAGTTTTATG
130 GGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
* * * **
146868 GATGTCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGAATTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAAACCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
* *
146933 AAACATCCTGCACGGAAGGTCTTATGGATGGCCCAAAGGACTTACAAATCAAGAAACCCCCGAAG
66 AAACATCCTGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* *
146998 GCTTAGTTTCTTAAATCTTATTTGAAAACATCCTGCACTGAGGGTCTTATG
131 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
* * * * **
147049 GATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACCGATGGCTCGAAG-GACTTACAAA
1 GATGGCCCGAAGGACTTACAAATCA----AGAAA-AC--CCCGAAGGCT--TAGTTTCTTA-AAA
* ** ** ** *
147113 --TCA---GGAAAC--CC--C-C-GAAGG-CTTA--G-T-TTCTTAA--A-TCT-CATTTGAA-A
56 TTTCATTTGAAAACATCCTGCACGGAAGGTCTTATGGATGACCCGAAGGACT-TACAAATCAAGA
* ** *** ** * ** * * * * *
147157 ACATCCTGCACTGAAGGTCTTATGGATGGCCCGAA--GGAATT--ACGCTTCATGCTC-GAAAGA
120 A-A-CC--C-CCGAAGG-CTTA--G-TTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGT
147217 CTTACT-
176 CTTA-TG
* * * *
147223 GATGGCCC-AGAGGACTTAGAAATCAAGAAAACCCCAAAGGATTAGTTTC-TAAAATATCATTTG
1 GATGGCCCGA-AGGACTTACAAATCAAGAAAACCCCGAAGGCTTAGTTTCTTAAAATTTCATTTG
*
147286 AAAATATCCTGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAA
65 AAAACATCCTGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAA
*
147351 GGCTTAGTTTCGTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
130 GGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
*
147403 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAAACCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
* * * * **
147468 AAACATCGTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATGAAGAAACCGTCGAAG
66 AAACATCCTGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
147533 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
131 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
147584 GATGGCCCGAAGGACTTAC
1 GATGGCCCGAAGGACTTAC
147603 GCATCATGCT
Statistics
Matches: 580, Mismatches: 101, Indels: 107
0.74 0.13 0.14
Matches are distributed among these distances:
164 3 0.01
165 4 0.01
166 4 0.01
167 6 0.01
169 6 0.01
170 6 0.01
171 9 0.02
172 4 0.01
173 2 0.00
174 34 0.06
175 25 0.04
176 10 0.02
177 6 0.01
178 10 0.02
179 25 0.04
180 96 0.17
181 287 0.49
182 4 0.01
183 9 0.02
184 2 0.00
185 9 0.02
186 1 0.00
188 9 0.02
189 4 0.01
190 5 0.01
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (181 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAAACCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
AAACATCCTGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
Found at i:147081 original size:22 final size:22
Alignment explanation
Indices: 147056--147117 Score: 74
Period size: 20 Copynumber: 2.9 Consensus size: 22
147046 ATGGATGGCC
*
147056 CGAAGGACTTACAAATCATGCT
1 CGAAGGACTTACAAATCAGGCT
* **
147078 CGAAAGACTTACCGAT--GGCT
1 CGAAGGACTTACAAATCAGGCT
147098 CGAAGGACTTACAAATCAGG
1 CGAAGGACTTACAAATCAGG
147118 AAACCCCCGA
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
20 16 0.52
22 15 0.48
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (22 bp):
CGAAGGACTTACAAATCAGGCT
Found at i:148169 original size:222 final size:221
Alignment explanation
Indices: 147884--149112 Score: 1356
Period size: 222 Copynumber: 5.5 Consensus size: 221
147874 GCTCGAAACA
* * * * * *
147884 CTTATTGATGGCCCGGAGGACTTACAAATCAAGAAACCCGCAAAGGCTTAGTTTCAAAAATCTCA
1 CTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCA
* *
147949 TTTGAAAATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAA
66 TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAA
* * * *
148014 GACATACTGATGGCCCAGAGGACTTACAAATAAAGCAACCCCCGAACGCTTAGTTTTTAAAATCT
131 GAC-TACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATCT
*
148079 CATTTGAAAACTTCCTGCACTGAAGGT
195 CATTTGAAAACATCCTGCACTGAAGGT
* * *
148106 CTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCACCGAAGGCTTAGTTTTTTAAATCTCA
1 CTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCA
* * * * * ** *
148171 TTTGAAAACATCATACAATGAAGGCCTTATGGATGTCCCGAAGGACTTACGCATCATGTTCGAAA
66 TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAA
* * *
148236 GACTTACAGATGGCCCGGAGGACCTACAAATCAAGAAACCCCCGAATGCTTAGTTTCTAAAATCT
131 GAC-TACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATCT
*
148301 CATTTGAAAGCATCCTGCACTGAAGGT
195 CATTTGAAAACATCCTGCACTGAAGGT
* *
148328 CTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCA
1 CTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCA
148393 TTTGAAAACATCCTG-ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAA
66 TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAA
* *
148457 CACTAACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCT
131 GACT-ACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATCT
*
148522 CATTTGAAAAGATCCTGCACTGAAGGT
195 CATTTGAAAACATCCTGCACTGAAGGT
* * * * *
148549 CTTATGGATGACCCGGAGGACTTAAAAATAAAGAAACCCCCGAAGGTTTAGTTTCTTAAAATTTC
1 CTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATCTC
* * *
148614 ATTTGAAAACATCCTGTACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA----AG-A
65 ATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAA
** * * ** ** * * **
148674 A-ACCCCCGAAGG--CTTAGTTTCTTA-AATCTCATTTGAAAACGTCCTGCACTGAGGGTCTTAT
130 AGACTACTGATGGCCCGGAG-GACTTACAA-ATCA--AG-AAAC--CC--C-C-GAACG-CTTA-
** *** ** * * * * * *
148735 GGATGGCCCGAA--GGACTT-ACAA-ATCATGCTC-GAAAGA
182 -G-TTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGT
** * * *
148772 CTTACCGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCA
1 CTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCA
* * **
148837 TTTAAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCTCGAAA
66 TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAA
* * * * * * *
148902 GACTTACTGATGGACCAGAGGACTTACAAATCAAGAAAACGCCAAAGGCTTAGTTTCTAAAATAT
131 GAC-TACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATCT
*
148967 CATTTGAAAATATCCTGCA-TAGAAGGT
195 CATTTGAAAACATCCTGCACT-GAAGGT
* *
148994 CTTATGGATGACCCGAAGAACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCA
1 CTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCA
* * * *
149059 TTTGAAAACATCCTGCACTGAAAGTTTTATGGATGGCTCGGAGGACTTACAAAT
66 TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAAT
149113 AAAGAAACCC
Statistics
Matches: 841, Mismatches: 132, Indels: 68
0.81 0.13 0.07
Matches are distributed among these distances:
214 5 0.01
215 7 0.01
216 5 0.01
217 7 0.01
218 7 0.01
219 4 0.00
220 10 0.01
221 186 0.22
222 463 0.55
223 94 0.11
224 11 0.01
225 8 0.01
226 4 0.00
227 6 0.01
228 7 0.01
229 5 0.01
230 7 0.01
231 5 0.01
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.25
Consensus pattern (221 bp):
CTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCA
TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAA
GACTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATCTC
ATTTGAAAACATCCTGCACTGAAGGT
Found at i:148193 original size:90 final size:90
Alignment explanation
Indices: 148032--148220 Score: 279
Period size: 90 Copynumber: 2.1 Consensus size: 90
148022 GATGGCCCAG
* * * * *
148032 AGGACTTACAAATAAAGCAACCCCCGAACGCTTAGTTTTTAAAATCTCATTTGAAAACTTCCTGC
1 AGGACTTACAAATAAAGAAACCACCGAACGCTTAGTTTTTAAAATCTCATTTGAAAACATCATAC
* *
148097 ACTGAAGGTCTTATGGATGACCCGA
66 AATGAAGGCCTTATGGATGACCCGA
* * *
148122 AGGACTTACAAATCAAGAAACCACCGAAGGCTTAGTTTTTTAAATCTCATTTGAAAACATCATAC
1 AGGACTTACAAATAAAGAAACCACCGAACGCTTAGTTTTTAAAATCTCATTTGAAAACATCATAC
*
148187 AATGAAGGCCTTATGGATGTCCCGA
66 AATGAAGGCCTTATGGATGACCCGA
148212 AGGACTTAC
1 AGGACTTAC
148221 GCATCATGTT
Statistics
Matches: 88, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
90 88 1.00
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (90 bp):
AGGACTTACAAATAAAGAAACCACCGAACGCTTAGTTTTTAAAATCTCATTTGAAAACATCATAC
AATGAAGGCCTTATGGATGACCCGA
Found at i:148397 original size:90 final size:89
Alignment explanation
Indices: 148244--148447 Score: 354
Period size: 90 Copynumber: 2.3 Consensus size: 89
148234 AAGACTTACA
* * *
148244 GATGGCCCGGAGGACCTACAAATCAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
148309 AGCATCCTGCACTGAAGGTCTTATG
66 AACATCCTG-ACTGAAGGTCTTATG
*
148334 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
148399 AACATCCTGACTGAAGGTCTTATG
66 AACATCCTGACTGAAGGTCTTATG
148423 GATGGCCCGAAGGACTTACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
148448 TGCTCGAAAC
Statistics
Matches: 109, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
89 40 0.37
90 69 0.63
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (89 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGACTGAAGGTCTTATG
Found at i:148746 original size:90 final size:90
Alignment explanation
Indices: 148465--149824 Score: 768
Period size: 90 Copynumber: 15.2 Consensus size: 90
148455 AACACTAACT
* *
148465 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
148530 AA-GATCCTGCACTGAAGGTCTTATG
66 AACG-TCCTGCACTGAAGGTCTTATG
* * * * * *
148555 GATGACCCGGAGGACTTAAAAATAAAGAAACCCCCGAAGGTTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* * *
148620 AAACATCCTGTACGGAAGGTCTTATG
65 AAACGTCCTGCACTGAAGGTCTTATG
148646 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
148711 AACGTCCTGCACTGAGGGTCTTATG
66 AACGTCCTGCACTGAAGGTCTTATG
* ** * ** **
148736 GATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACCGATGGCCCGGAG-GACTTACAA-
1 GATGGCCCGAAGGACTTACAAATCA----AG-AA-AC-CCCCGAAGG--CTTAGTTTCTTA-AAT
* *
148799 ATCA--AG-AAAC--CC--C-C-GAAGG-CTTA--
56 CTCATTTGAAAACGTCCTGCACTGAAGGTCTTATG
** ** * * * * * * * * *
148822 G-T-TTCTTAA--A-TCT-C-ATTTAA-AAACATCCTGCA--CTGAAG-GTCTTATGGATGGCCC
1 GATGGCCCGAAGGACT-TACAAATCAAGAAAC-CCCCGAAGGCT-TAGTTTCTTA--AAT--CTC
** * * * * *
148876 GA-AGGAATTACGCATCATGCTC-GAAAGACTTACT-
59 -ATTTGAA-AACG--TCCTGCACTGAAGGTCTTA-TG
* * * * * *
148910 GATGGACC-AGAGGACTTACAAATCAAGAAAACGCCAAAGGCTTAGTTTCTAAAATATCATTTGA
1 GATGGCCCGA-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGA
**
148974 AAATATCCTGCA-TAGAAGGTCTTATG
65 AAACGTCCTGCACT-GAAGGTCTTATG
* *
149000 GATGACCCGAAGAACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * *
149065 AACATCCTGCACTGAAAGTTTTATG
66 AACGTCCTGCACTGAAGGTCTTATG
* * * * * *
149090 GATGGCTCGGAGGACTTACAAATAAAGAAACCCCCGATGGCTTATTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* * * *
149155 AAACATCTTGCACGGAAGGTCTTTTG
65 AAACGTCCTGCACTGAAGGTCTTATG
149181 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
149246 AACATCCTGCACTGAAGGTCTTATG
66 AACGTCCTGCACTGAAGGTCTTATG
* * ** * * ***
149271 GATGTCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACCGATGGC-CAGGAGGACTTACAA-
1 GATGGCCCGAAGGACTTACAAATCA----AG-AA-AC-CCCCGAAGGCTTA-G-TTTCTTA-AAT
* *
149334 ATCA--AG-AAAC--CC--C-C-GAAGG-CTTA--
56 CTCATTTGAAAACGTCCTGCACTGAAGGTCTTATG
** ** ** * * * * ** *** *
149357 G-T-TTCTTAA--A-TCT-CATTTGAA-AACATCCTGCACTGAAGG-TCA-TAT-GGATGGCCCG
1 GATGGCCCGAAGGACT-TACAAATCAAGAA-A-CC--C-CCGAAGGCTTAGTTTCTTAAATCTC-
** * * * * *
149412 A-AGGAATTACGCATCATGCTC-GAAAGACTTACT-
59 ATTTGAA-AACG--TCCTGCACTGAAGGTCTTA-TG
* * * *
149445 GATGGCCC-AGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGA
1 GATGGCCCGA-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGA
** *
149509 AAATATCCTGCACGGAAGGTCTTATG
65 AAACGTCCTGCACTGAAGGTCTTATG
* * *
149535 GATGACCTGAAAGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * *
149600 AACATCCTGCACTGAAAGTTTTATG
66 AACGTCCTGCACTGAAGGTCTTATG
* * *
149625 GATGGCCCCAAGGACATACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* *
149690 AAACATCATGCACTGAAGGTCTTATG
65 AAACGTCCTGCACTGAAGGTCTTATG
**
149716 GATGGCCCGAAGGACTTACAAATCAAGAAACCGTCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
149781 AACATCCTGCACTGAAGGTCTTATG
66 AACGTCCTGCACTGAAGGTCTTATG
149806 GATGGCCCGAAGGACTTAC
1 GATGGCCCGAAGGACTTAC
149825 GCATCATGCT
Statistics
Matches: 971, Mismatches: 201, Indels: 196
0.71 0.15 0.14
Matches are distributed among these distances:
69 1 0.00
70 7 0.01
71 1 0.00
73 5 0.01
74 5 0.01
75 5 0.01
76 3 0.00
77 2 0.00
78 11 0.01
80 3 0.00
81 7 0.01
82 6 0.01
84 9 0.01
85 12 0.01
86 10 0.01
88 10 0.01
89 31 0.03
90 487 0.50
91 252 0.26
92 14 0.01
93 13 0.01
94 12 0.01
95 17 0.02
96 13 0.01
97 14 0.01
98 14 0.01
99 7 0.01
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACGTCCTGCACTGAAGGTCTTATG
Found at i:148893 original size:132 final size:132
Alignment explanation
Indices: 148646--150880 Score: 2171
Period size: 132 Copynumber: 16.8 Consensus size: 132
148636 AGGTCTTATG
* *
148646 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * **
148711 AACGTCCTGCACTGAGGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
*
148776 CC
131 CT
* *
148778 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
148843 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
148908 CT
131 CT
* * * * * *
148910 GATGGACCAGAGGACTTACAAATCAAGAAAACGCCAAAGGCTTAGTTTCTAAAATATCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * ** *
148975 AATATCCTGCA-TAGAAGGTCTTATGGATGACCCGAAGAACTTA--CA-AAT-CAAG-AA-AC-C
66 AACATCCTGCACT-GAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTT
* *
149032 CCC
130 ACT
* ** ** * * ** *
149035 GAAGG--CTTAGTTTCTTA-AATCTCATTTGAAAACATCCTGCACTGAAAGTTTTATGGATGGCT
1 GATGGCCCGGAG-GACTTACAA-ATCA--AG-AAAC--CC--C-C-G-AAGGCTTA--G-T--TT
* ** ** * * * ** *** ** *
149097 CGGAGGA-CTTACAAAT-AAAGA-AACC--C-CCGATGG-CTTAT---TTTCTTAAAATTTCATT
49 C-TAAAATC-T-CATTTGAAA-ACATCCTGCACTGAAGGTCTTATGGATGGC-CCGAA--GGACT
** * * * * *
149152 TGAAAACATCTTGCACGGAAGGTCTT-TT
107 T--ACGCATCATGCTC-GAAAGACTTACT
* *
149180 GGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGA
1 -GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
* **
149245 AAACATCCTGCACTGAAGGTCTTATGGATGTCCCGAAGGACTTACAAATCATGCTCGAAAGACTT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTT
*
149310 ACC
130 ACT
* *
149313 GATGGCCAGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
149378 AACATCCTGCACTGAAGGTCATATGGATGGCCCGAAGGAATTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
149443 CT
131 CT
* * * *
149445 GATGGCCCAGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * * * ** **
149510 AATATCCTGCACGGAAGGTCTTATGGATGACCTGAAAGACTTA--CA-AAT-CAAG-AA-AC-CC
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
*
149568 CC
131 CT
* ** ** * * ** **
149570 GAAGG--CTTAGTTTCTTA-AATCTCATTTGAAAACATCCTGCACTGAAAGTTTTATGGATGGCC
1 GATGGCCCGGAG-GACTTACAA-ATCA--AG-AAAC--CC--C-C-G-AAGGCTTA--G-T--TT
* * ** * * ** *** ** *
149632 CCAAGGACAT-ACAAATCAAGAA-A-CC--C-CCGAAGG-CTTA--G-TTTCTTAAAATTTCATT
49 CTAA--A-ATCTCATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGC-CCGAA--GGACT
** * * *
149687 TGAAAACATCATGCACTGAAGGTCTTA-T
107 T--ACGCATCATGCTC-GAAAGACTTACT
* ** *
149715 GGATGGCCCGAAGGACTTACAAATCAAGAAACCGTCGAAGGCTTAGTTTCTTAAATCTCATTTGA
1 -GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
149780 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTT
*
149845 AAT
130 ACT
* * * *
149848 GATGGCCCAGAGGACTTATAAATCAAGAAACCCCCGAAGGCTTGGTTTCTAAAATATCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
149913 AATATCCTGCACTAAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
149978 CT
131 CT
* *
149980 GATGGCCTGGAGGACTTACAAATCAAGAAACCCCCGAAAGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
150045 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
150110 CT
131 CT
* * *
150112 GATGGCCCGGAGGACTTACAAATCAAGAAACCCGCAAAGGCTTACTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
150177 AATATCCTGCACAGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
150242 CT
131 CT
* * * *
150244 GATGGCCCAGAGGACTTACAAATCAAGAAACCTCCGAACGCTTAGTTTTTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
150309 AACATCCTGCACTGAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
150374 CT
131 CT
* * * * *
150376 GATGGCCTGGAGGACTTACAAATCAAAAAACACCCGAAAGCTTAGTTTCTAAAATCTCATTTTAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
150441 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
150506 CT
131 CT
* **
150508 GATGGCCCGGAGGACTTACAAATCAAGAAAACCGAGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * *
150573 AATATCCTGCATTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGGAAGACATA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
150638 CT
131 CT
* *
150640 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATGTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * *
150705 AACATTCTGCACTGATGCTCTTATGGATGACCCGGAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
150770 CT
131 CT
*
150772 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
150837 AGCATCCTACACTGAAGGTCTTACGGATGGCCCGAAGGACTTAC
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
150881 AAATCAAGAA
Statistics
Matches: 1717, Mismatches: 286, Indels: 200
0.78 0.13 0.09
Matches are distributed among these distances:
123 10 0.01
124 14 0.01
125 10 0.01
126 6 0.00
127 10 0.01
128 4 0.00
129 11 0.01
130 15 0.01
131 13 0.01
132 1398 0.81
133 26 0.02
134 30 0.02
135 17 0.01
136 17 0.01
137 29 0.02
138 11 0.01
139 7 0.00
140 16 0.01
141 14 0.01
142 11 0.01
143 2 0.00
144 10 0.01
145 4 0.00
146 8 0.00
147 14 0.01
148 10 0.01
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (132 bp):
GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
CT
Found at i:149272 original size:181 final size:180
Alignment explanation
Indices: 148910--149824 Score: 750
Period size: 181 Copynumber: 5.1 Consensus size: 180
148900 AAGACTTACT
* * * *
148910 GATGGACCAGAGGACTTACAAATCAAGAAAACGCCAAAGGCTTAGTTTCTAAAATATCATTTGAA
1 GATGGCCCGGAGGACTTACAAATAAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAA
* *
148975 AATATCCTGCATAGAAGGTCTTATGGATGACCCGAAGAACTTACAAATCAAGAAACCCCCGAAGG
66 AACATCCTGCACAGAAGGTCTTATGGATGACCCGAAGAACTTACAAATCAAGAAACCCCCGAAGG
*
149040 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTTTTATG
131 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATG
* * * * * *
149090 GATGGCTCGGAGGACTTACAAATAAAGAAACCCCCGATGGCTTATTTTCTTAAAATTTCATTTGA
1 GATGGCCCGGAGGACTTACAAATAAAGAAAACCCCAAAGGCTTAGTTTC-TAAAATATCATTTGA
* * * * *
149155 AAACATCTTGCACGGAAGGTCTTTTGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
65 AAACATCCTGCACAGAAGGTCTTATGGATGACCCGAAGAACTTACAAATCAAGAAACCCCCGAAG
*
149220 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
130 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATG
* * ** * * * * *** *
149271 GATGTCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACCGATGGC-CAGGAGGACTTACAA-
1 GATGGCCCGGAGGACTTACAAAT-A---AAGAAA-AC--CCCAAAGGCTTA-G-TTTC-TAAAAT
* ** ** * ** *
149334 ATCA--AG-AAAC--CC--C-C-GAAGG-CTTA--G-T-TTCTTAA-ATC-T-CATTTGAA-AAC
56 ATCATTTGAAAACATCCTGCACAGAAGGTCTTATGGATGACCCGAAGAACTTACAAATCAAGAA-
* * ** *** ** * ** * * *
149381 ATCCTGCACTGAAGGTCATATGGATGGCCCGAA--GGAATT--ACGCATCATGCTC-GAAAGACT
120 A-CC--C-CCGAAGG-C-T-TAG-TTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCT
149441 TACT-
177 TA-TG
* *
149445 GATGGCCCAGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAA
1 GATGGCCCGGAGGACTTACAAATAAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAA
* * *
149510 AATATCCTGCACGGAAGGTCTTATGGATGACCTGAA-AGACTTACAAATCAAGAAACCCCCGAAG
66 AACATCCTGCACAGAAGGTCTTATGGATGACCCGAAGA-ACTTACAAATCAAGAAACCCCCGAAG
*
149574 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTTTTATG
130 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATG
** * * * * *
149625 GATGGCCCCAAGGACATACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGGAGGACTTACAAATAAAGAAAACCCCAAAGGCTTAGTTTC-TAAAATATCATTTGA
* * * * **
149690 AAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCGTCGAAG
65 AAACATCCTGCACAGAAGGTCTTATGGATGACCCGAAGAACTTACAAATCAAGAAACCCCCGAAG
*
149755 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
130 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATG
*
149806 GATGGCCCGAAGGACTTAC
1 GATGGCCCGGAGGACTTAC
149825 GCATCATGCT
Statistics
Matches: 569, Mismatches: 118, Indels: 95
0.73 0.15 0.12
Matches are distributed among these distances:
165 4 0.01
166 5 0.01
167 7 0.01
168 2 0.00
169 5 0.01
170 6 0.01
171 8 0.01
172 3 0.01
173 2 0.00
174 33 0.06
175 26 0.05
176 8 0.01
177 8 0.01
178 7 0.01
179 26 0.05
180 99 0.17
181 279 0.49
182 4 0.01
183 7 0.01
184 2 0.00
185 8 0.01
186 2 0.00
187 1 0.00
188 11 0.02
189 6 0.01
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (180 bp):
GATGGCCCGGAGGACTTACAAATAAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAA
AACATCCTGCACAGAAGGTCTTATGGATGACCCGAAGAACTTACAAATCAAGAAACCCCCGAAGG
CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATG
Found at i:151067 original size:91 final size:90
Alignment explanation
Indices: 150772--151156 Score: 619
Period size: 90 Copynumber: 4.3 Consensus size: 90
150762 AAGACTTACT
* * *
150772 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * *
150837 AGCATCCTACACTGAAGGTCTTACG
66 AACATCCTGCACTGAAGGTCTTATG
*
150862 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
150927 AACATCCTGCACTGAAAGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
150952 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTTATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* *
151017 AAACATCATGCACTGAAGGTCTTATA
65 AAACATCCTGCACTGAAGGTCTTATG
* *
151043 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTGTTAAATCTGATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
151108 AACATCCTG-ACTGACGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
151132 GATGGCCCGAAGGACTTACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
151157 TGCTCGAAAC
Statistics
Matches: 274, Mismatches: 20, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
89 38 0.14
90 152 0.55
91 84 0.31
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.25
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:151075 original size:181 final size:179
Alignment explanation
Indices: 150772--151156 Score: 626
Period size: 181 Copynumber: 2.1 Consensus size: 179
150762 AAGACTTACT
* *
150772 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
150837 AGCATCCTACACTGAAGGTCTTACGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGAAGG
66 AACATCATACACTGAAGGTCTTACAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
150902 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATG
131 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTG-ACTGAAAGTCTTATG
* *
150952 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTTATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATCTCATTTGA
* *
151017 AAACATCATGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
65 AAACATCATACACTGAAGGTCTTACAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* * **
151082 GCTTAGTTTGTTAAATCTGATTTGAAAACATCCTGACTGACGGTCTTATG
130 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGACTGAAAGTCTTATG
151132 GATGGCCCGAAGGACTTACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
151157 TGCTCGAAAC
Statistics
Matches: 190, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
180 85 0.45
181 105 0.55
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.25
Consensus pattern (179 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCATACACTGAAGGTCTTACAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGACTGAAAGTCTTATG
Found at i:151361 original size:90 final size:91
Alignment explanation
Indices: 151179--151373 Score: 356
Period size: 90 Copynumber: 2.2 Consensus size: 91
151169 TTACTGATGG
151179 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATATCATTTGAAAACATCCTGC
1 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATATCATTTGAAAACATCCTGC
151244 ACGGAAGGTCTTATGGATGGCCCGAA
66 ACGGAAGGTCTTATGGATGGCCCGAA
*
151270 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGC
1 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATATCATTTGAAAACATCCTGC
* *
151334 ACTGAGGGTCTTATGGATGGCCCGAA
66 ACGGAAGGTCTTATGGATGGCCCGAA
151360 GGACTTACAAATCA
1 GGACTTACAAATCA
151374 TGCTCGAAAG
Statistics
Matches: 101, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
90 61 0.60
91 40 0.40
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (91 bp):
GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATATCATTTGAAAACATCCTGC
ACGGAAGGTCTTATGGATGGCCCGAA
Found at i:151479 original size:223 final size:223
Alignment explanation
Indices: 150952--151722 Score: 1243
Period size: 223 Copynumber: 3.5 Consensus size: 223
150942 AAGTCTTATG
* *
150952 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTTATTTGA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
* *
151017 AAACATCATGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
66 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* * *
151082 GCTTAGTTTGTTAAATCTGATTTGAAAACATCCTG-ACTGACGGTCTTATGGATGGCCCGAAGGA
131 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGA
*
151146 CTTACAAATCATGCTCGAAACACTTACT
196 CTTACAAATCATGCTCGAAAGACTTACT
*
151174 GAT-----GG-GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATATCATTTGA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
*
151233 AAACATCCTGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
66 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
*
151298 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAGGGTCTTATGGATGGCCCGAAGGA
131 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGA
*
151363 CTTACAAATCATGCTCGAAAGACTTACC
196 CTTACAAATCATGCTCGAAAGACTTACT
*
151391 GATGGCCCGGAGGACATACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
*
151456 AAACATCCTGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
66 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* * *
151521 GCTTAGTTTCTAAAATCTCATTTGAAAATATCCTGCATTGAAGGTCTTATGGATGGCCCGAAGGA
131 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGA
* * *
151586 CTTACACATCATGCTCGGAAGACATACT
196 CTTACAAATCATGCTCGAAAGACTTACT
* *
151614 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATGTCATTTGA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
* * * * *
151678 AAACATTCTGCACTGATGCTCTTATGGATGACCCGGAGGACTTAC
66 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
151723 GCATCATGCT
Statistics
Matches: 512, Mismatches: 30, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
216 147 0.29
217 58 0.11
222 58 0.11
223 249 0.49
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (223 bp):
GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGA
CTTACAAATCATGCTCGAAAGACTTACT
Found at i:151503 original size:133 final size:132
Alignment explanation
Indices: 151259--151506 Score: 442
Period size: 133 Copynumber: 1.9 Consensus size: 132
151249 AGGTCTTATG
*
151259 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACATACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
151324 AACATCCTGCACTGAGGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTA
66 AACATCCTGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTA
151389 CC
131 CC
* *
151391 GATGGCCCGGAGGACATACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACATACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
151456 AAACATCCTGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
65 AAACATCCTGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
151507 AGAAACCCCC
Statistics
Matches: 110, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
132 49 0.45
133 61 0.55
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (132 bp):
GATGGCCCGAAGGACATACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTA
CC
Found at i:151581 original size:90 final size:91
Alignment explanation
Indices: 151391--151596 Score: 342
Period size: 90 Copynumber: 2.3 Consensus size: 91
151381 AAGACTTACC
* * *
151391 GATGGCCCGGAGGACATACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
151456 AAACATCCTGCACGGAAGGTCTTATG
66 AAACATCCTGCACGGAAGGTCTTATG
151482 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* **
151546 AAATATCCTGCATTGAAGGTCTTATG
66 AAACATCCTGCACGGAAGGTCTTATG
*
151572 GATGGCCCGAAGGACTTACACATCA
1 GATGGCCCGAAGGACTTACAAATCA
151597 TGCTCGGAAG
Statistics
Matches: 108, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
90 61 0.56
91 47 0.44
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.24
Consensus pattern (91 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
AAACATCCTGCACGGAAGGTCTTATG
Found at i:151719 original size:132 final size:131
Alignment explanation
Indices: 151482--153457 Score: 979
Period size: 132 Copynumber: 14.9 Consensus size: 131
151472 AGGTCTTATG
151482 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCG-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
151547 AATATCCTGCATTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGGAAGACATA
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
151612 CT
130 CT
*
151614 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATGTCATTTGAA
1 GATGGCCC-GAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * * * *
151679 AACATTCTGCACTGATGCTCTTATGGATGACCCGGAGGACTTACGCATCATGCTCGAAAGACTTA
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
151744 CT
130 CT
*
151746 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCC-GAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* ** * ** **
151811 AGCATCCTAAACTGAAGGTCTTACGGATGGCCCGAAGGACTTACA-A--AT-CAAG-AA-AC-CC
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
151869 CT
130 CT
* ** ** * * * **
151871 GAAGG-CTTAGTTTCTTA-AATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGGCCC
1 GATGGCCCGAG-GACTTACAA-ATCA--AG-AAAC--CC--C-C-G-AAGGCTTA--G-T--TTC
* * ** * * ** *** ** *
151934 GAAGGA-CTTACAAATCAAGAA-A-CC--C-CCGAAGG-CTTA--G-TTTCTTAAAATTTTATTT
49 TAA-AATC-T-CATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGC-CCGAA--GGACTT
* * * * *
151989 GAAAACATCATGCACTGAAGGTCTTA-T
107 --ACACATCATGCTC-GAAAGACATACT
* * *
152016 AGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTGTTAAATCTGATTTGA
1 -GATGGCCCG-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
* * * *
152081 AAACATCCTG-ACTGACGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAACACTT
64 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACAT
152145 ACT
129 ACT
*
152148 GAT-G---G-GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAA
1 GATGGCCCGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATCTCATTTGAA
* * * ** **
152208 AACATCCTGCACGGAAGGTCTTATGGATGACCCGAAGTACTTACA-A--AT-CAAG-AA-AC-CC
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
*
152266 CC
130 CT
* ** ** * * * * * * *
152268 GAAGG-CTTAGTTTCTTA-AATCTCATTTGAAAACATCCTGCA--CTGAAAGTTT-TAAGGATGG
1 GATGGCCCGAG-GACTTACAA-ATCA--AG-AAAC-CCCCGAAGGCT--TAGTTTCTAA-AAT--
* ** * ***** * ** ** *** ** *
152328 CCCGGAGGACTTACAAATAAAGAAACCCCCAAAGG-CTTA--G-TTTCTTAAAATTTCATTTGAA
55 CTC-----A-TTTGAAA-ACATCCTGCACTGAAGGTCTTATGGATGGC-CCGAA--GGACTT--A
* * * * * *
152389 AACATCCTGCACGGAAGGTCTTA-T
108 CACATCATGCTC-GAAAGACATACT
* *
152413 GGATGGCCCTAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGA
1 -GATGGCCC-GAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
* * * *
152478 AAACATCCTGCACTGAGGGTCTTATGGATGGCCCGAAGGAATTACAAATCATGCTCGAAAGACTT
64 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACAT
152543 AAC-
129 -ACT
*
152546 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCC-GAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
152611 AACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGAATTACACATCATGCTCGAAAGACTTA
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
152676 CT
130 CT
* * *
152678 GATGGCCCAGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAA
1 GATGGCCC-GAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * ** **
152743 AATATCCTGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACA-A--AT-CAAG-AA-AC-CC
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
*
152801 CC
130 CT
* ** ** * * ** **
152803 GAAGG-CTTAGTTTCTTA-AATCTCATTTGAAAACATCCTGCACTGAAAGTTTTATGGATGGCCC
1 GATGGCCCGAG-GACTTACAA-ATCA--AG-AAAC--CC--C-C-G-AAGGCTTA--G-T--TTC
* * ** * * ** *** ** *
152866 GAAGGA-CTTACAAATCAAGAA-A-CC--C-CCGAAGG-CTTA--G-TTTCTTAAAATTTCAATT
49 TAA-AATC-T-CATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGC-CCGAA--GGACTT
* * * * *
152921 GAAAACATCATGCACTGAAGGTCTTA-T
107 --ACACATCATGCTC-GAAAGACATACT
*
152948 GGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATGTCATTTGA
1 -GATGGCCCG-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
* * * * * * *
153013 AAACATCCTGCACTGATGCTCTTATGGATGACCCGGAGGACTTACGCATAATGCTCGAAAGACTT
64 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACAT
*
153078 AAT
129 ACT
* * *
153081 GATGGCCCCGAGGACTTATAAATCAAGAAACCCCCGAAGGCTTGGTTTCTAAAATATCATTTGAA
1 GATGG-CCCGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
153146 AATATCCTGCACTAAAGGTCTTATGGATGGCTCGAAGGACTTACACATCATGCTCGAAAGACATA
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
153211 CT
130 CT
* * *
153213 GATGGCCCAAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTTTAAAATCTCATTTGAA
1 GATGGCCC-GAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
153278 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAATACTTA
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
153343 CT
130 CT
* * * *
153345 GATGGCCTGGAGGACTTACAAATCAAGAAA-TCCTGAATGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCC-CGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * * *
153409 AGCATCCTACACTGAAAGTC-TACGGATGGCTCGAAGGACTTACAAATCA
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCA
153458 AGAAACCCGC
Statistics
Matches: 1374, Mismatches: 317, Indels: 308
0.69 0.16 0.15
Matches are distributed among these distances:
120 3 0.00
121 3 0.00
122 2 0.00
123 10 0.01
124 21 0.02
125 55 0.04
126 29 0.02
127 49 0.04
128 10 0.01
129 21 0.02
130 38 0.03
131 74 0.05
132 729 0.53
133 38 0.03
134 41 0.03
135 22 0.02
136 32 0.02
137 42 0.03
138 13 0.01
139 12 0.01
140 10 0.01
141 19 0.01
142 13 0.01
143 14 0.01
144 17 0.01
145 9 0.01
146 12 0.01
147 24 0.02
148 12 0.01
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.25
Consensus pattern (131 bp):
GATGGCCCGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
ACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATAC
T
Found at i:152041 original size:91 final size:90
Alignment explanation
Indices: 151746--152130 Score: 610
Period size: 90 Copynumber: 4.3 Consensus size: 90
151736 AAGACTTACT
* * *
151746 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* ** *
151811 AGCATCCTAAACTGAAGGTCTTACG
66 AACATCCTGCACTGAAGGTCTTATG
*
151836 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
151901 AACATCCTGCACTGAAAGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
151926 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTTATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* *
151991 AAACATCATGCACTGAAGGTCTTATA
65 AAACATCCTGCACTGAAGGTCTTATG
* *
152017 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTGTTAAATCTGATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
152082 AACATCCTG-ACTGACGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
152106 GATGGCCCGAAGGACTTACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
152131 TGCTCGAAAC
Statistics
Matches: 273, Mismatches: 21, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
89 38 0.14
90 151 0.55
91 84 0.31
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:152049 original size:181 final size:181
Alignment explanation
Indices: 151746--152528 Score: 850
Period size: 181 Copynumber: 4.1 Consensus size: 181
151736 AAGACTTACT
* *
151746 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAATGCTTAGTTTC-TAAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* * ** * * *
151810 AAGCATCCTAAACTGAAGGTCTTACGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGAAG
66 AAACATCATGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
151875 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATG
131 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATG
* *
151926 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTTATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* *
151991 AAACATCATGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
66 AAACATCATGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* * **
152056 GCTTAGTTTGTTAAATCTGATTTGAAAACATCCTG-ACTGACGGTCTTATG
131 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATG
* * * * *** **
152106 GATGGCCCGAAGGACTTACAAATCATGCTCGAAACACTTACTGATGGGGACTTACAAATCAAGAA
1 GATGGCCCGAAGGACTTACAAATCA----AGAAAC-C--CCCGA--AGG-CTTA-GTTTC--TTA
* * *
152171 ACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACGGAAGGTCTTATGGAT
53 A------AA-TCTCA--TT-TGAAAA---CA--T-----CA---TGCACGGAAGGTCTTATGGAT
* *
152236 GACCCGAAGTACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAAC
95 GGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAAC
* *
152301 ATCCTGCACTGAAAGTTTTAAG
160 ATCCTGCACTGAAAGTCTTATG
* * * *
152323 GATGGCCCGGAGGACTTACAAATAAAGAAACCCCCAAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* *
152388 AAACATCCTGCACGGAAGGTCTTATGGATGGCCCTAAGGACTTACAAATCAAGAAACCCCCGAAG
66 AAACATCATGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
**
152453 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAGGGTCTTATG
131 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATG
*
152504 GATGGCCCGAAGGAATTACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
152529 TGCTCGAAAG
Statistics
Matches: 501, Mismatches: 64, Indels: 75
0.78 0.10 0.12
Matches are distributed among these distances:
180 85 0.17
181 227 0.45
184 6 0.01
185 1 0.00
187 3 0.01
189 3 0.01
190 4 0.01
191 4 0.01
193 2 0.00
194 5 0.01
195 2 0.00
197 2 0.00
198 2 0.00
199 2 0.00
200 3 0.01
202 2 0.00
203 5 0.01
204 2 0.00
206 4 0.01
207 4 0.01
208 3 0.01
210 2 0.00
212 1 0.00
213 7 0.01
216 86 0.17
217 34 0.07
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.26
Consensus pattern (181 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
AAACATCATGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATG
Found at i:152351 original size:90 final size:91
Alignment explanation
Indices: 152153--153057 Score: 793
Period size: 90 Copynumber: 10.1 Consensus size: 91
152143 TTACTGATGG
*
152153 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGC
1 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCCTGC
*
152218 ACGGAAGGTCTTATGGATGACCCGAA
66 ACGGAAGGTCTTATGGATGGCCCGAA
*
152244 GTACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGC
1 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCCTGC
* * * * *
152308 ACTGAAAGTTTTAAGGATGGCCCGGA
66 ACGGAAGGTCTTATGGATGGCCCGAA
* * *
152334 GGACTTACAAATAAAGAAACCCCCAAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGC
1 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCCTGC
*
152399 ACGGAAGGTCTTATGGATGGCCCTAA
66 ACGGAAGGTCTTATGGATGGCCCGAA
152425 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGC
1 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCCTGC
* *
152489 ACTGAGGGTCTTATGGATGGCCCGAA
66 ACGGAAGGTCTTATGGATGGCCCGAA
* * *** * ** ** *
152515 GGAATTACAAATCATGCTCGAAAGACTTAACGATGGCCCGGAG-GACTTACAAA--TCA--AG-A
1 GGACTTACAAATCA----AG-AA-AC-CCCCGAAGG--CTTAGTTTCTTA-AAATCTCATTTGAA
* **
152574 AAC--CC--C-C-GAAGG-CTTAGT---T--TCTTAA
56 AACATCCTGCACGGAAGGTCTTA-TGGATGGCCCGAA
* ** * * * * * * * **
152599 --A-TCT-C-ATTTGA-AAACATCCTGCA--CTGAAG-GTCTTATAGATGGCCCGA-AGGAATTA
1 GGACT-TACAAATCAAGAAAC-CCCCGAAGGCT-TAGTTTCTTA-AAAT--CTC-ATTTGAA--A
* * * *
152654 CACATCATGCTC-GAAAGACTTACT-GATGGCCC-AGA
57 -ACATCCTGCACGGAAGGTCTTA-TGGATGGCCCGA-A
* * * *
152689 GGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTC-TAAAATATCATTTGAAAATATCCTGC
1 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCCTGC
*
152753 ACGGAAGGTCTTATGGATGACCCGAA
66 ACGGAAGGTCTTATGGATGGCCCGAA
152779 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGC
1 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCCTGC
* * *
152843 ACTGAAAGTTTTATGGATGGCCCGAA
66 ACGGAAGGTCTTATGGATGGCCCGAA
* * *
152869 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCAATTGAAAACATCATGC
1 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCCTGC
*
152934 ACTGAAGGTCTTATGGATGGCCCGAA
66 ACGGAAGGTCTTATGGATGGCCCGAA
*
152960 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATGTCATTTGAAAACATCCTGC
1 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCCTGC
* * * * *
153024 ACTGATGCTCTTATGGATGACCCGGA
66 ACGGAAGGTCTTATGGATGGCCCGAA
153050 GGACTTAC
1 GGACTTAC
153058 GCATAATGCT
Statistics
Matches: 661, Mismatches: 102, Indels: 103
0.76 0.12 0.12
Matches are distributed among these distances:
69 1 0.00
70 9 0.01
73 4 0.01
74 3 0.00
75 1 0.00
76 1 0.00
77 1 0.00
79 1 0.00
80 4 0.01
81 2 0.00
82 3 0.00
84 4 0.01
85 5 0.01
86 6 0.01
88 5 0.01
89 15 0.02
90 332 0.50
91 207 0.31
92 6 0.01
93 4 0.01
94 10 0.02
95 13 0.02
96 7 0.01
97 5 0.01
98 6 0.01
99 3 0.00
100 3 0.00
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (91 bp):
GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCCTGC
ACGGAAGGTCTTATGGATGGCCCGAA
Found at i:152981 original size:181 final size:180
Alignment explanation
Indices: 152678--153057 Score: 593
Period size: 181 Copynumber: 2.1 Consensus size: 180
152668 AAGACTTACT
*
152678 GATGGCCC-AGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGA
1 GATGGCCCGA-AGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCAATTGA
* *
152742 AAATATCCTGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
65 AAACATCATGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* *
152807 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAG-TTTTATG
130 GCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTG-AAGCTCTTATG
* * *
152858 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCAATTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTC-TAAAATATCAATTGA
* *
152923 AAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
65 AAACATCATGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* *
152988 GCTTAGTTTCTAAAATGTCATTTGAAAACATCCTGCACTGATGCTCTTATG
130 GCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGCTCTTATG
* *
153039 GATGACCCGGAGGACTTAC
1 GATGGCCCGAAGGACTTAC
153058 GCATAATGCT
Statistics
Matches: 183, Mismatches: 14, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
180 47 0.26
181 136 0.74
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (180 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCAATTGAA
AACATCATGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
CTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGCTCTTATG
Found at i:153453 original size:88 final size:89
Alignment explanation
Indices: 153339--153546 Score: 285
Period size: 89 Copynumber: 2.3 Consensus size: 89
153329 GCTCGAAATA
* * * * *
153339 CTTACTGATGGCCTGGAGGACTTACAAATCAAGAAATCC-TGAATGCTTAGTTTCTAAAATCTCA
1 CTTACGGATGGCC-GAAGGACTTACAAATCAAGAAACCCGCGAAGGCTTAGTTTCTAAAATCTCA
*
153403 TTTGAAAGCATCCTACACTGAAAGT
65 TTTGAAAACATCCTACACTGAAAGT
153428 C-TACGGATGGCTCGAAGGACTTACAAATCAAGAAACCCGCGAAGGCTTAGTTTCTAAAATCTCA
1 CTTACGGATGGC-CGAAGGACTTACAAATCAAGAAACCCGCGAAGGCTTAGTTTCTAAAATCTCA
* * *
153492 TTTGAAAATATCCTGCACTGAAGGT
65 TTTGAAAACATCCTACACTGAAAGT
* *
153517 CTTATGGATGGCCGAAGGACTTACACATCA
1 CTTACGGATGGCCGAAGGACTTACAAATCA
153547 TGCTCGAAAG
Statistics
Matches: 105, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
88 32 0.30
89 64 0.61
90 9 0.09
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (89 bp):
CTTACGGATGGCCGAAGGACTTACAAATCAAGAAACCCGCGAAGGCTTAGTTTCTAAAATCTCAT
TTGAAAACATCCTACACTGAAAGT
Found at i:153669 original size:220 final size:220
Alignment explanation
Indices: 153213--153677 Score: 684
Period size: 220 Copynumber: 2.1 Consensus size: 220
153203 AAGACATACT
* * *
153213 GATGGCCCAAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTTTAAAATCTCATTTGAA
1 GATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATCTCATTTGAA
* * *
153278 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAATACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
** * *
153343 CTGATGGCCTGGAGGACTTACAAATCAAGAAATCCTGAATGCTTAGTTTCTAAAATCTCATTTGA
131 CTGATGGCCCAGAGGACTTACAAATCAAGAAATCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
*
153408 AAGCATCCTACACTGAAAGTCTACG
196 AAACATCCTACACTGAAAGTCTACG
* * * *
153433 GATGGCTCGAAGGACTTACAAATCAAGAAACCCGCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATCTCATTTGAA
*
153498 AATATCCTGCACTGAAGGTCTTATGGATGG-CCGAAGGACTTACACATCATGCTCGAAAGACATA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
*
153562 -TGATGGCCCAGAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTAAAATGTCATTTG
131 CTGATGGCCCAGAGGACTTACAAATCAAGAAAT-CCCGAAGGCTTAGTTTCTAAAATCTCATTTG
* * *
153626 AAAACATCCTGCACTG-ATGCTCTTATG
195 AAAACATCCTACACTGAAAG-TC-TACG
* *
153653 GATGACCCGGAGGACTTACACATCA
1 GATGACCCGAAGGACTTACAAATCA
153678 TGCTCGAAAC
Statistics
Matches: 220, Mismatches: 22, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
218 32 0.15
219 75 0.34
220 113 0.51
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.25
Consensus pattern (220 bp):
GATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
CTGATGGCCCAGAGGACTTACAAATCAAGAAATCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
AAACATCCTACACTGAAAGTCTACG
Found at i:153747 original size:132 final size:131
Alignment explanation
Indices: 153433--154731 Score: 1971
Period size: 132 Copynumber: 9.9 Consensus size: 131
153423 AAAGTCTACG
* *
153433 GATGGCTCGAAGGACTTACAAATCAAGAAACCCGCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCC-CGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
153498 AATATCCTGCACTGAAGGTCTTATGGATGG-CCGAAGGACTTACACATCATGCTCGAAAGACATA
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
153562 -T
130 CT
* *
153563 GATGGCCCAGAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTAAAATGTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * *
153628 AACATCCTGCACTGATGCTCTTATGGATGACCCGGAGGACTTACACATCATGCTCGAAACACTTA
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
153693 CT
130 CT
153695 GATGGCCCGGAGGACTTACAAATCAAGAAACCCGCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCC-CGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
153760 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
153825 CT
130 CT
* *
153827 GATGGCCCAGAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTAAAATGTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * *
153892 AACATCCTGCACTGATGCTCTTATGGATGACCCGGAGGACTTACACATCATGCTCGAAACACTTA
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
153957 CT
130 CT
* *
153959 GATGGCCCGGAGGACTTACAAATCAAGAAACCCGCAAAGGTTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCC-CGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
154024 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCG-AAGACATA
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
154088 CT
130 CT
* *
154090 GATGGCCCAGAGGACTTACAAATCAAGAAAGCCCCGAACGCTTAGTTT-TAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
154154 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAATACTTA
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
154219 CT
130 CT
* * *
154221 GATGGCCTGGAGGACTTACAAATCAAGAAACCCTCAAAGGTTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCC-CGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
154286 AACATCATGCACTGAAGGTCTTATGGATGGCCC-AGAGGACTTACGCATCATGCTCGAAAGACTT
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGA-AGGACTTACACATCATGCTCGAAAGACTT
154350 ACT
129 ACT
* *
154353 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCAAAGGTTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
154418 AATATCCTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCAAAAGACTTA
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
154483 CT
130 CT
* *
154485 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATGTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * *
154550 AACATCC-GACACTGAAGATCTTATGGATGACCCGGAGGACTTACGCATTATGCTCGAAAGACTT
65 AACATCCTG-CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTT
154614 ACT
129 ACT
* * * * *
154617 GACGGCCCGGACGACTTACAAATTAAGAAACTCCCAAATGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAAC-CCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
154682 AGCATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACATACAAATCA
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCA
154732 AGAAACCCCC
Statistics
Matches: 1065, Mismatches: 88, Indels: 30
0.90 0.07 0.03
Matches are distributed among these distances:
130 156 0.15
131 137 0.13
132 764 0.72
133 8 0.01
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (131 bp):
GATGGCCCGGAGGACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
ACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTAC
T
Found at i:154336 original size:43 final size:42
Alignment explanation
Indices: 154288--154371 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 42
154278 CATTTGAAAA
* *
154288 CATCATGCACTGAAGGTCTTA-TGGATGGCCCAGAGGACTTACG
1 CATCATGCAC-GAAAGACTTACT-GATGGCCCAGAGGACTTACG
* *
154331 CATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTAC
1 CATCATGCACGAAAGACTTACTGATGGCCCAGAGGACTTAC
154372 AAATCAAGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
42 26 0.72
43 10 0.28
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (42 bp):
CATCATGCACGAAAGACTTACTGATGGCCCAGAGGACTTACG
Found at i:154442 original size:526 final size:527
Alignment explanation
Indices: 153433--154731 Score: 2043
Period size: 526 Copynumber: 2.5 Consensus size: 527
153423 AAAGTCTACG
* *
153433 GATGGCTCGAAGGACTTACAAATCAAGAAACCCGCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCGCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
153498 AATATCCTGCACTGAAGGTCTTATGGATGG-CCGAAGGACTTACACATCATGCTCGAAAGACATA
66 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
* *
153562 -TGATGGCCCAGAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTAAAATGTCATTTG
131 CTGATGGCCCAGAGGACTTACAAATCAAGAAA-CCCCGAACGCTTAGTTTCTAAAATCTCATTTG
* * * *
153626 AAAACATCCTGCACTGATGCTCTTATGGATGACCCGGAGGACTTACACATCATGCTCGAAACACT
195 AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAACACT
*
153691 TACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCGCGAAGGCTTAGTTTCTAAAATCTCATT
260 TACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCGCAAAGGCTTAGTTTCTAAAATCTCATT
* *
153756 TGAAAATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGA
325 TGAAAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGA
* * *
153821 CATACTGATGGCCCAGAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTAAAATGTCA
390 CATACTGATGGCCCAGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCA
* * * *
153886 TTTGAAAACATCCTGCACTGATGCTCTTATGGATGACCCGGAGGACTTACACATCATGCTCGAAA
455 TTTGAAAACATCCTACACTGAAGCTCTTATGGATGACCCGAAGGACTTACACATCATGCTCAAAA
153951 CACTTACT
520 CACTTACT
* *
153959 GATGGCCCGGAGGACTTACAAATCAAGAAACCCGCAAAGGTTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCGCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
154024 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCG-AAGACATA
66 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
154088 CTGATGGCCCAGAGGACTTACAAATCAAGAAAGCCCCGAACGCTTAGTTT-TAAAATCTCATTTG
131 CTGATGGCCCAGAGGACTTACAAATCAAGAAA-CCCCGAACGCTTAGTTTCTAAAATCTCATTTG
* *
154152 AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAATACT
195 AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAACACT
* * *
154217 TACTGATGGCCTGGAGGACTTACAAATCAAGAAACCCTCAAAGGTTTAGTTTCTAAAATCTCATT
260 TACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCGCAAAGGCTTAGTTTCTAAAATCTCATT
*
154282 TGAAAACATCATGCACTGAAGGTCTTATGGATGGCCC-AGAGGACTTACGCATCATGCTCGAAAG
325 TGAAAACATCATGCACTGAAGGTCTTATGGATGGCCCGA-AGGACTTACACATCATGCTCGAAAG
* * *
154346 ACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCAAAGGTTTAGTTTCTAAAATCTC
389 ACATACTGATGGCCCAGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTC
* * *
154411 ATTTGAAAATATCCTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCAAA
454 ATTTGAAAACATCCTACACTGAAGCTCTTATGGATGACCCGAAGGACTTACACATCATGCTCAAA
*
154476 AGACTTACT
519 ACACTTACT
* * *
154485 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATGTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCGCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * * * *
154550 AACATCC-GACACTGAAGATCTTATGGATGACCCGGAGGACTTACGCATTATGCTCGAAAGACTT
66 AATATCCTG-CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACAT
* * * * * *
154614 ACTGACGGCCCGGACGACTTACAAATTAAGAAACTCCCAAATGCTTAGTTTCTAAAATCTCATTT
130 ACTGATGGCCCAGAGGACTTACAAATCAAGAAAC-CCCGAACGCTTAGTTTCTAAAATCTCATTT
* * *
154679 GAAAGCATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACATACAAATCA
194 GAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCA
154732 AGAAACCCCC
Statistics
Matches: 710, Mismatches: 56, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
525 2 0.00
526 525 0.74
527 121 0.17
528 62 0.09
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (527 bp):
GATGGCCCGGAGGACTTACAAATCAAGAAACCCGCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
CTGATGGCCCAGAGGACTTACAAATCAAGAAACCCCGAACGCTTAGTTTCTAAAATCTCATTTGA
AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAACACTT
ACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCGCAAAGGCTTAGTTTCTAAAATCTCATTT
GAAAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGAC
ATACTGATGGCCCAGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCAT
TTGAAAACATCCTACACTGAAGCTCTTATGGATGACCCGAAGGACTTACACATCATGCTCAAAAC
ACTTACT
Found at i:154903 original size:91 final size:90
Alignment explanation
Indices: 154620--154999 Score: 582
Period size: 90 Copynumber: 4.2 Consensus size: 90
154610 ACTTACTGAC
* * * * * * * *
154620 GGCCCGGACGACTTACAAATTAAGAAACTCCCAAATGCTTAGTTTCTAAAATCTCATTTGAAAGC
1 GGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAAC
154685 ATCCTGCACTGAAGGTCTTATGGAT
66 ATCCTGCACTGAAGGTCTTATGGAT
*
154710 GGCCCGAAGGACATACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAAC
1 GGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAAC
* *
154775 ATCCTGCACTGAAAGTTTTATGGAT
66 ATCCTGCACTGAAGGTCTTATGGAT
* *
154800 GGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTGATTTGAAAA
1 GGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAA
* *
154865 CATCATGCACTGAAGGTCTTATAGAT
65 CATCCTGCACTGAAGGTCTTATGGAT
* *
154891 GGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAACCTCATTTGAAAAC
1 GGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAAC
154956 ATCCTG-ACTGAAGGTCTTATGGAT
66 ATCCTGCACTGAAGGTCTTATGGAT
*
154980 GGCCTGAAGGACTTACAAAT
1 GGCCCGAAGGACTTACAAAT
155000 AATGCTCGAA
Statistics
Matches: 264, Mismatches: 25, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
89 36 0.14
90 145 0.55
91 83 0.31
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.26
Consensus pattern (90 bp):
GGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAAC
ATCCTGCACTGAAGGTCTTATGGAT
Found at i:154932 original size:181 final size:179
Alignment explanation
Indices: 154620--154999 Score: 589
Period size: 181 Copynumber: 2.1 Consensus size: 179
154610 ACTTACTGAC
* * * * * *
154620 GGCCCGGACGACTTACAAATTAAGAAACTCCCAAATGCTTAGTTTCTAAAATCTCATTTGAAAGC
1 GGCCCGAAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAAAAC
* * *
154685 ATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACATACAAATCAAGAAACCCCCGAAGGCTT
66 ATCATGCACTGAAGGTCTTATAGATGGCCCGAAGGACATACAAATAAAGAAACCCCCGAAGGCTT
* *
154750 AGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTTTTATGGAT
131 AGTTTCTTAAACCTCATTTGAAAACATCCTG-ACTGAAAGTCTTATGGAT
* * *
154800 GGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTGATTTGAAAA
1 GGCCCGAAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTC-TAAAATCTCATTTGAAAA
*
154865 CATCATGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCT
65 CATCATGCACTGAAGGTCTTATAGATGGCCCGAAGGACATACAAATAAAGAAACCCCCGAAGGCT
*
154930 TAGTTTCTTAAACCTCATTTGAAAACATCCTGACTGAAGGTCTTATGGAT
130 TAGTTTCTTAAACCTCATTTGAAAACATCCTGACTGAAAGTCTTATGGAT
*
154980 GGCCTGAAGGACTTACAAAT
1 GGCCCGAAGGACTTACAAAT
155000 AATGCTCGAA
Statistics
Matches: 182, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
180 75 0.41
181 107 0.59
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.26
Consensus pattern (179 bp):
GGCCCGAAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAAAAC
ATCATGCACTGAAGGTCTTATAGATGGCCCGAAGGACATACAAATAAAGAAACCCCCGAAGGCTT
AGTTTCTTAAACCTCATTTGAAAACATCCTGACTGAAAGTCTTATGGAT
Found at i:155302 original size:90 final size:90
Alignment explanation
Indices: 155019--155314 Score: 457
Period size: 90 Copynumber: 3.3 Consensus size: 90
155009 AACACTTACT
* * *
155019 GATGGTCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
155084 AACATCCTGCACTGAAGGTCTTTTG
66 AACATCCTGCACTGAAGGTCTTATG
* * * * * *
155109 GATGGCCCGGAGGACTTACAAATAAATAAACCCTCGAAGACTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
*
155174 AAACATCCTGCACGGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
155200 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
155265 AACATCCTGCACTGATGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
155290 GATAGCCTGAAGGACTTACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
155315 TGCTCGAAAG
Statistics
Matches: 184, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
90 102 0.55
91 82 0.45
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:155447 original size:132 final size:132
Alignment explanation
Indices: 155200--156376 Score: 1158
Period size: 132 Copynumber: 8.9 Consensus size: 132
155190 AGGTCTTATG
*
155200 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
155265 AACATCCTGCACTGATGGTCTTATGGATAGCCTGAAGGACTTACAAATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
155330 CT
131 CT
*
155332 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
155397 AACATCCTGCACTGAAGGTGTTATGGATGGCCCGAAGGATTTACGCATCATGCTCGAAAGACATA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
155462 CT
131 CT
*
155464 GATGGCCC-AGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGA
1 GATGGCCCGA-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
* * * *
155528 AAATATCCTGCACTAAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTT
155593 ACT
130 ACT
* *
155596 AATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
** * * * *
155661 AACATCAGGCACTGAAGGTCTTATGGATGGTCCGAAGGACATACGCATCATGTTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
155726 CT
131 CT
* * *
155728 GATGGGCCGGAGGACTTACAAATCAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * * *
155793 AGCATCC-GACACTGAAGGTGTTATGGATGGCCCTAAGGACTTACAAATCAAGAAAC-CCACGAA
66 AACATCCTG-CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATG---CTCGA--AA
*
155856 GGCTTA--
125 GACTTACT
** *** ** * * * * * * ** *
155862 G-TTTCTTAAATCTCATTTGAAAATATCATG----CTCTGAAAGTCTTATGGATGGCCTGAAGGA
1 GATGGCCCGAA--GGACTT-ACAA-ATCAAGAAACCCCCG-AAGGCTTA--G-T-TTCT-AA-AA
** * * ** *** ** * *
155922 -CTTACAAAT-AAAGA-AACC--C-CCGAAGG-CTTA--G-TTTCTTAAAATTTCATTTGAAAAC
55 TC-T-CATTTGAAA-ACATCCTGCACTGAAGGTCTTATGGATGGC-CCGAA--GGACTT--ACAC
* * *
155977 ATCATGCACTGAAGGTCTTA-T
112 ATCATGCTC-GAAAGACTTACT
* *
155998 GGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTTATTTGA
1 -GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
* * * * * *
156063 AAACATCCTACTCTGAGGGTCTTATGGATGGCCCGAAGGACATACAAATCATGCTCAAAAGACTT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTT
*
156128 AAT
130 ACT
* * *
156131 GATGACCC-AGAGGACTTAGAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGA
1 GATGGCCCGA-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
* * * * *
156195 AAATATCCTACACTAAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTT
156260 ACT
130 ACT
* * *
156263 GATGGTCCGGAGGACTTACAAATCAAGAAA-CCCAGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
156327 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCA
156377 AGAAATCCCC
Statistics
Matches: 848, Mismatches: 148, Indels: 99
0.77 0.14 0.09
Matches are distributed among these distances:
130 3 0.00
131 87 0.10
132 616 0.73
133 21 0.02
134 23 0.03
135 20 0.02
136 21 0.02
137 24 0.03
138 19 0.02
139 3 0.00
140 8 0.01
141 3 0.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (132 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
CT
Found at i:156011 original size:91 final size:90
Alignment explanation
Indices: 155728--156113 Score: 558
Period size: 90 Copynumber: 4.3 Consensus size: 90
155718 AAGACTTACT
* * * *
155728 GATGGGCCGGAGGACTTACAAATCAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * *
155793 AGCATC-CGACACTGAAGGTGTTATG
66 AACATCATG-CACTGAAGGTCTTATG
* *
155818 GATGGCCCTAAGGACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * *
155883 AATATCATGCTCTGAAAGTCTTATG
66 AACATCATGCACTGAAGGTCTTATG
* * *
155908 GATGGCCTGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
155973 AAACATCATGCACTGAAGGTCTTATG
65 AAACATCATGCACTGAAGGTCTTATG
*
155999 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTTATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * *
156064 AACATCCTACTCTGAGGGTCTTATG
66 AACATCATGCACTGAAGGTCTTATG
*
156089 GATGGCCCGAAGGACATACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
156114 TGCTCAAAAG
Statistics
Matches: 265, Mismatches: 29, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
90 180 0.68
91 85 0.32
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCATGCACTGAAGGTCTTATG
Found at i:156041 original size:181 final size:180
Alignment explanation
Indices: 155728--156111 Score: 581
Period size: 181 Copynumber: 2.1 Consensus size: 180
155718 AAGACTTACT
* * * *
155728 GATGGGCCGGAGGACTTACAAATCAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
155793 AGCATCCGACACTGAAGGTGTTATGGATGGCCCTAAGGACTTACAAATCAAGAAACCCACGAAGG
66 AACATCCGACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGG
* *
155858 CTTAGTTTCTTAAATCTCATTTGAAAATATCATGCTCTGAAAGTCTTATG
131 CTTAGTTTCTTAAATCTCATTTGAAAACATCATACTCTGAAAGTCTTATG
* *
155908 GATGGCCTGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATCTCATTTGA
* *
155973 AAACATCATG-CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAA
65 AAACATC-CGACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAA
* * **
156037 GGCTTAGTTTCTTAAATCTTATTTGAAAACATCCTACTCTGAGGGTCTTATG
129 GGCTTAGTTTCTTAAATCTCATTTGAAAACATCATACTCTGAAAGTCTTATG
*
156089 GATGGCCCGAAGGACATACAAAT
1 GATGGCCCGAAGGACTTACAAAT
156112 CATGCTCAAA
Statistics
Matches: 183, Mismatches: 19, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
180 44 0.24
181 138 0.75
182 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.26
Consensus pattern (180 bp):
GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCGACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGG
CTTAGTTTCTTAAATCTCATTTGAAAACATCATACTCTGAAAGTCTTATG
Found at i:156216 original size:535 final size:534
Alignment explanation
Indices: 154353--156460 Score: 1841
Period size: 535 Copynumber: 3.9 Consensus size: 534
154343 AAGACTTACT
* * * *
154353 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCAAAGGTTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAA
* * * *
154418 AATATCCTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCAAAAGACTTA
66 AACATCCTACACTAAAGGTCTTATGGATGGCCCGAAGGACATACAAATCATGCTCAAAAGACTTA
* * * *
154483 CTGATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATGTCATTTG
131 ATAATGACCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTG
* * * * * * *
154548 AAAACATCCGACACTGAAGATCTTATGGATGACCCGGAGGACTTACGCATTATGCTCGAAAGACT
196 AAAACATCAGACACTAAAGGTCTTATGGATGGCCCGAAGGACATACGCATCATGCTCGAAAGACT
* * * * *
154613 TACTGACGGCCCGGACGACTTACAAATTAAGAAACTCCCA-AATGCTTAGTTTCTAAAATCTCAT
261 TACTGATGGGCCGGAGGACTTACAAATCAAGAAA--CCCAGAAGGCTTAGTTTCTAAAATCTCAT
* * *
154677 TTGAAAGCATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACATACAAATCAAGAAACCCCC
324 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAATCCCC
* * * * *
154742 GAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCACTGAAAGTTTTATGGATGGCCCG
389 GAACGCTTAGTTT-TTAAAATCTCATTTGAAAACATCATGCGCTGAAAGTCTTATGGATGACCCG
* *
154806 AAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTGATTTGAAAACATCAT
453 AAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCAT
*
154871 GCACTGAAGGTCTTATA
518 GCACTGAAGGTCTTATG
* * **
154888 GATGGCCC-GAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAACCTCATTTGA
1 GATGGCCCAG-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGA
* * * * * * *
154952 AAACATCCT-GACTGAAGGTCTTATGGATGGCCTGAAGGACTTACAAATAATGCTCGAAACACTT
65 AAACATCCTACACTAAAGGTCTTATGGATGGCCCGAAGGACATACAAATCATGCTCAAAAGACTT
* * ** * *
155016 ACTGATGGTCC-GAAGGACTTACAAATCAAGAAACCCCCGAAGGATTAGTTTCTAAAATCTCATT
130 AATAATGACCCAG-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATT
* * * * * ** * *
155080 TGAAAACATCCTG-CACTGAAGGTCTTTTGGATGGCCCGGAGGACTTACAAATAAATAAACCCTC
194 TGAAAACAT-CAGACACTAAAGGTCTTATGGATGGCCCGAAGGACATACGCAT-CAT----GCTC
** ** * * * ** *
155144 G-AAGACTTA--G-T--TTCTTA-AAATTTCATTTGAA-AACATCCTGCACGGAAGGTCTTATGG
253 GAAAGACTTACTGATGGGCCGGAGGACTTACAAATCAAGAA-A-CC--CA--GAAGG-CTTA--G
** * * ** * * ** **
155201 ATGGCCCGAAGGA-CTTACAAATCAAGAA-A-CC--C-CCGAAGG-CTTA--G-T-TTCTTAA--
309 -T--TTCTAA-AATC-T-CATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGG
** * * * * * * * ** * * *
155253 A-TCT-CATTTGAA-AACAT-CCTGCACTG-ATGGTCTTATGGATAGCCTGAAGGACTT-ACAA-
367 ACT-TACAAATCAAGAA-ATCCCCGAAC-GCTTAGT-TT-T-TAAAATCT----CATTTGAAAAC
* * * * *
155311 ATCATGCTC-GAAAGACTTACT-GATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGAAGGCT
422 ATCATGCGCTGAAAGTCTTA-TGGATGACCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCT
* * *
155374 TAGTTTC-TAAAATCTCATTTGAAAACATCCTGCACTGAAGGTGTTATG
486 TAGTTTCTTAAAATTTCATTTGAAAACATCATGCACTGAAGGTCTTATG
*
155422 GATGGCCCGAAGGATTTACGCATCATGCTCGAAAGACATACTGATGGCCCAGAGGACTTACAAAT
1 GATGGCCC--A-G----A-GGA-C-T--T------ACA-A---AT----CA-A-G----A-----
* *
155487 CAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAAAATATCCTGCACTAAAGGTCTTA
29 -----AACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAAAACATCCTACACTAAAGGTCTTA
* * ** * * * *
155552 TGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTACTAATGGCCCGGAGGACTTACAA
89 TGGATGGCCCGAAGGACATACAAATCATGCTCAAAAGACTTAATAATGACCCAGAGGACTTACAA
* * *
155617 ATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCAGGCACTGAAGGTCT
154 ATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAAAACATCAGACACTAAAGGTCT
* *
155682 TATGGATGGTCCGAAGGACATACGCATCATGTTCGAAAGACTTACTGATGGGCCGGAGGACTTAC
219 TATGGATGGCCCGAAGGACATACGCATCATGCTCGAAAGACTTACTGATGGGCCGGAGGACTTAC
* * *
155747 AAATCAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATTTGAAAGCATCC-GACACTGAAGG
284 AAATCAAGAAA-CCCAGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTG-CACTGAAGG
* * *
155811 TGTTATGGATGGCCCTAAGGACTTACAAATCAAGAAA-CCCACGAAGGCTTAGTTTCTT-AAATC
347 TCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAATCCC-CGAACGCTTAGTTT-TTAAAATC
* * * *
155874 TCATTTGAAAATATCATGCTCTGAAAGTCTTATGGATGGCCTGAAGGACTTACAAATAAAGAAAC
410 TCATTTGAAAACATCATGCGCTGAAAGTCTTATGGATGACCCGAAGGACTTACAAATAAAGAAAC
155939 CCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACTGAAGGTCTTATG
475 CCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACTGAAGGTCTTATG
* * *
155999 GATGGCCC-GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTTATTTGA
1 GATGGCCCAG-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGA
* * *
156063 AAACATCCTACTCTGAGGGTCTTATGGATGGCCCGAAGGACATACAAATCATGCTCAAAAGACTT
65 AAACATCCTACACTAAAGGTCTTATGGATGGCCCGAAGGACATACAAATCATGCTCAAAAGACTT
* *
156128 AATGATGACCCAGAGGACTTAGAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTT
130 AATAATGACCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTT
* ** * *
156193 GAAAATATCCTACACTAAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGAC
195 GAAAACATCAGACACTAAAGGTCTTATGGATGGCCCGAAGGACATACGCATCATGCTCGAAAGAC
*
156258 TTACTGATGGTCCGGAGGACTTACAAATCAAGAAACCCAGAAGGCTTAGTTTCTAAAATCTCATT
260 TTACTGATGGGCCGGAGGACTTACAAATCAAGAAACCCAGAAGGCTTAGTTTCTAAAATCTCATT
156323 TGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAATCCCCG
325 TGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAATCCCCG
* *
156388 AACGCTTAGTTTTTAAAATCTCATTTGAAAACATCCTGCGCTGAAGGTCTTATGGATGACCCGAA
390 AACGCTTAGTTTTTAAAATCTCATTTGAAAACATCATGCGCTGAAAGTCTTATGGATGACCCGAA
156453 GGACTTAC
455 GGACTTAC
156461 GCATCATGCT
Statistics
Matches: 1262, Mismatches: 196, Indels: 231
0.75 0.12 0.14
Matches are distributed among these distances:
531 14 0.01
532 19 0.02
533 9 0.01
534 346 0.27
535 369 0.29
536 13 0.01
537 8 0.01
538 12 0.01
539 9 0.01
540 7 0.01
541 2 0.00
542 6 0.00
543 5 0.00
544 7 0.01
545 2 0.00
546 1 0.00
549 1 0.00
550 1 0.00
551 2 0.00
552 3 0.00
553 1 0.00
555 2 0.00
556 2 0.00
558 1 0.00
559 3 0.00
560 1 0.00
561 1 0.00
562 1 0.00
565 1 0.00
566 2 0.00
567 7 0.01
568 5 0.00
569 6 0.00
570 2 0.00
571 7 0.01
572 7 0.01
573 12 0.01
574 8 0.01
575 16 0.01
576 105 0.08
577 198 0.16
578 5 0.00
579 24 0.02
580 9 0.01
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (534 bp):
GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAA
AACATCCTACACTAAAGGTCTTATGGATGGCCCGAAGGACATACAAATCATGCTCAAAAGACTTA
ATAATGACCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTG
AAAACATCAGACACTAAAGGTCTTATGGATGGCCCGAAGGACATACGCATCATGCTCGAAAGACT
TACTGATGGGCCGGAGGACTTACAAATCAAGAAACCCAGAAGGCTTAGTTTCTAAAATCTCATTT
GAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAATCCCCGA
ACGCTTAGTTTTTAAAATCTCATTTGAAAACATCATGCGCTGAAAGTCTTATGGATGACCCGAAG
GACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCA
CTGAAGGTCTTATG
Found at i:156399 original size:221 final size:221
Alignment explanation
Indices: 156141--156592 Score: 744
Period size: 221 Copynumber: 2.0 Consensus size: 221
156131 GATGACCCAG
* * *
156141 AGGACTTAGAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAAAATATCCTAC
1 AGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATATCATTTGAAAACATCCTAC
* * *
156206 ACTAAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTTACTGATGGTCC
66 ACTAAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
*
156271 GGAGGACTTACAAATCAAGAAA-CCCAGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
131 AGAGGACTTACAAATCAAGAAACCCCA-AAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
156335 GCACTGAAGGTCTTATGGATGGCCCGA
195 GCACTGAAGGTCTTATGGATGGCCCGA
* * * *
156362 AGGACTTACAAATCAAGAAATCCCCGAACGCTTAGTTTTTAAAATCTCATTTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATATCATTTGAAAACATCCTAC
* *
156427 GCTGAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
66 ACTAAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
*
156492 AGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCGT
131 AGAGGACTTACAAATCAAGAAA-CCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
*
156557 GCACTGAAGGTCTTATGGATGGCCCGG
195 GCACTGAAGGTCTTATGGATGGCCCGA
156584 AGGACTTAC
1 AGGACTTAC
156593 GCATCATGCT
Statistics
Matches: 214, Mismatches: 15, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
221 139 0.65
222 71 0.33
223 4 0.02
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (221 bp):
AGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATATCATTTGAAAACATCCTAC
ACTAAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
AGAGGACTTACAAATCAAGAAACCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTG
CACTGAAGGTCTTATGGATGGCCCGA
Found at i:156416 original size:90 final size:89
Alignment explanation
Indices: 156263--156460 Score: 324
Period size: 90 Copynumber: 2.2 Consensus size: 89
156253 AAGACTTACT
* * *
156263 GATGGTCCGGAGGACTTACAAATCAAGAAACCCAGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCAGAACGCTTAGTTTCTAAAATCTCATTTGAAA
156328 ACATCCTGCACTGAAGGTCTTATG
66 ACATCCTGCACTGAAGGTCTTATG
* *
156352 GATGGCCCGAAGGACTTACAAATCAAGAAATCCCCGAACGCTTAGTTTTTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAA-CCCAGAACGCTTAGTTTCTAAAATCTCATTTGAA
*
156417 AACATCCTGCGCTGAAGGTCTTATG
65 AACATCCTGCACTGAAGGTCTTATG
*
156442 GATGACCCGAAGGACTTAC
1 GATGGCCCGAAGGACTTAC
156461 GCATCATGCT
Statistics
Matches: 101, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
89 28 0.28
90 73 0.72
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (89 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCAGAACGCTTAGTTTCTAAAATCTCATTTGAAA
ACATCCTGCACTGAAGGTCTTATG
Found at i:156589 original size:132 final size:132
Alignment explanation
Indices: 156352--156724 Score: 658
Period size: 132 Copynumber: 2.8 Consensus size: 132
156342 AGGTCTTATG
* * * *
156352 GATGGCCC-GAAGGACTTACAAATCAAGAAATCCCCGAACGCTTAGTTTTTAAAATCTCATTTGA
1 GATGGCCCAG-AGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGA
* * *
156416 AAACATCCTGCGCTGAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTT
65 AAACATCGTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTT
156481 ACT
130 ACT
156484 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
156549 AACATCGTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCGTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
156614 CT
131 CT
156616 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAA
156681 AACATCGTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
66 AACATCGTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
156725 AAATCAAGAA
Statistics
Matches: 231, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
132 230 1.00
133 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (132 bp):
GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCGTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
CT
Found at i:156712 original size:222 final size:222
Alignment explanation
Indices: 156484--156946 Score: 712
Period size: 222 Copynumber: 2.1 Consensus size: 222
156474 AAGACTTACT
156484 GATGGCCC-AGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGA
1 GATGGCCCGA-AGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGA
* * * * ** *
156548 AAACATCGTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTT
65 AAACATCCTACACTGAAGGTCTTATGGATGGCCCGAAGGACATACAAATCATGCTCAAAAGACTT
* * *
156613 ACTGATGGCCCAGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTT
130 AATGATGACCCAGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATATCATTT
* * *
156678 GAAAACATCGTGCACTGAAGGTCTTATG
195 GAAAACATCCTACACTAAAGGTCTTATG
* * *
156706 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTTATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
156771 AACATCCTACTCTGAGGGTCTTATGGATGGCCCGAAGGACATACAAATCATGCTCAAAAGACTTA
66 AACATCCTACACTGAAGGTCTTATGGATGGCCCGAAGGACATACAAATCATGCTCAAAAGACTTA
* *
156836 ATGATGACCCAGAGGACTTAGAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTG
131 ATGATGACCCAGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATATCATTTG
*
156901 AAAATATCCTACACTAAAGGTCTTATG
196 AAAACATCCTACACTAAAGGTCTTATG
*
156928 GATGGCCCGAAGGTCTTAC
1 GATGGCCCGAAGGACTTAC
156947 GCATCATGCT
Statistics
Matches: 218, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
222 217 1.00
223 1 0.00
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (222 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTACACTGAAGGTCTTATGGATGGCCCGAAGGACATACAAATCATGCTCAAAAGACTTA
ATGATGACCCAGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATATCATTTG
AAAACATCCTACACTAAAGGTCTTATG
Found at i:156769 original size:90 final size:90
Alignment explanation
Indices: 156616--156820 Score: 322
Period size: 90 Copynumber: 2.3 Consensus size: 90
156606 AAGACTTACT
156616 GATGGCCC-AGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGA
1 GATGGCCCGA-AGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGA
* *
156680 AAACATCGTGCACTGAAGGTCTTATG
65 AAACATCCTACACTGAAGGTCTTATG
* * *
156706 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTTATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
156771 AACATCCTACTCTGAGGGTCTTATG
66 AACATCCTACACTGAAGGTCTTATG
*
156796 GATGGCCCGAAGGACATACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
156821 TGCTCAAAAG
Statistics
Matches: 106, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
90 105 0.99
91 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTACACTGAAGGTCTTATG
Found at i:157077 original size:131 final size:132
Alignment explanation
Indices: 156706--157083 Score: 569
Period size: 132 Copynumber: 2.9 Consensus size: 132
156696 AGGTCTTATG
* * *
156706 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTTATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
156771 AACATCCTACTCTGAGGGTCTTATGGATGGCCCGAAGGACATACAAATCATGCTCAAAAGACTTA
66 AACATCCTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCAAAAGACTTA
156836 AT
131 AT
* * * *
156838 GATGACCCAGAGGACTTAGAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * ** *
156903 AATATCCTACACTAAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCAAAAGACTTA
*
156968 CT
131 AT
* *
156970 GATGGTCCGGAGGACTTACAAATCAAGAAA-CCCAGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
157034 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
66 AACATCCTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
157084 AGAAATCCCC
Statistics
Matches: 217, Mismatches: 29, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
131 76 0.35
132 141 0.65
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.25
Consensus pattern (132 bp):
GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCAAAAGACTTA
AT
Found at i:157121 original size:221 final size:221
Alignment explanation
Indices: 156848--157305 Score: 738
Period size: 221 Copynumber: 2.1 Consensus size: 221
156838 GATGACCCAG
* * *
156848 AGGACTTAGAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAAAATATCCTAC
1 AGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATATCATTTGAAAACATCCTAC
* * *
156913 ACTAAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTTACTGATGGTCC
66 ACTAAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
*
156978 GGAGGACTTACAAATCAAGAAA-CCCAGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
131 AGAGGACTTACAAATCAAGAAACCCCA-AAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
*
157042 GCACTGAAGGTCTTATGGATGGCCCGA
195 GCACTGAAGGTCTTATAGATGGCCCGA
* * * *
157069 AGGACTTACAAATCAAGAAATCCCCGAACGCTTAGTTTTTAAAATCTCATTTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATATCATTTGAAAACATCCTAC
* *
157134 GCTGAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
66 ACTAAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
*
157199 AGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCT
131 AGAGGACTTACAAATCAAGAAA-CCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
157264 GCACTGAAGGTCTTATAGATGGCCCGA
195 GCACTGAAGGTCTTATAGATGGCCCGA
* *
157291 AGGAATTACACATCA
1 AGGACTTACAAATCA
157306 TGCTCGAAAG
Statistics
Matches: 218, Mismatches: 17, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
221 139 0.64
222 75 0.34
223 4 0.02
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (221 bp):
AGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATATCATTTGAAAACATCCTAC
ACTAAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
AGAGGACTTACAAATCAAGAAACCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTG
CACTGAAGGTCTTATAGATGGCCCGA
Found at i:157123 original size:90 final size:89
Alignment explanation
Indices: 156970--157167 Score: 324
Period size: 90 Copynumber: 2.2 Consensus size: 89
156960 AAGACTTACT
* * *
156970 GATGGTCCGGAGGACTTACAAATCAAGAAACCCAGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCAGAACGCTTAGTTTCTAAAATCTCATTTGAAA
157035 ACATCCTGCACTGAAGGTCTTATG
66 ACATCCTGCACTGAAGGTCTTATG
* *
157059 GATGGCCCGAAGGACTTACAAATCAAGAAATCCCCGAACGCTTAGTTTTTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAA-CCCAGAACGCTTAGTTTCTAAAATCTCATTTGAA
*
157124 AACATCCTGCGCTGAAGGTCTTATG
65 AACATCCTGCACTGAAGGTCTTATG
*
157149 GATGACCCGAAGGACTTAC
1 GATGGCCCGAAGGACTTAC
157168 GCATCATGCT
Statistics
Matches: 101, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
89 28 0.28
90 73 0.72
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (89 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCAGAACGCTTAGTTTCTAAAATCTCATTTGAAA
ACATCCTGCACTGAAGGTCTTATG
Found at i:157186 original size:353 final size:354
Alignment explanation
Indices: 155886--157527 Score: 2587
Period size: 353 Copynumber: 4.6 Consensus size: 354
155876 ATTTGAAAAT
* * * * *
155886 ATCATGCTCTGAAAGTCTTA-TGGATGGCCTGAAGGACTTACAAATAAAGAAACCCCCGAAGGCT
1 ATCATGCTC-GAAAGACTTACT-GATGGCCCGGAGGACTTACAAATCAAGAAACCCCAGAAGGCT
* *
155950 TAGTTTCTTAAAATTTCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACT
64 TAGTTTC-TAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACT
* * * *
156015 TACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTTATTTGAAAACATCCTACTCTGAG
128 TACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCGCTGAA
*
156080 GGTCTTATGGATGGCCCGAAGGACATACAAATCATGCTCAAAAGACTTAATGATGACCCAGAGGA
193 GGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCAAAAGACTTAATGATGACCCAGAGGA
* * *
156145 CTTAGAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAAAATATCCTACACTA
258 CTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATATCATTTGAAAACATCCTACACTA
*
156210 AAGGTCTTATGGATGGCCCGAAGGTCTTACGC
323 AAGGTCTTATGGATGGCCCGAAGGACTTACGC
*
156242 ATCATGCTCGAAAGACTTACTGATGGTCCGGAGGACTTACAAATCAAGAAA-CCCAGAAGGCTTA
1 ATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCAGAAGGCTTA
156306 GTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
66 GTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
* *
156371 AAATCAAGAAATCCCCGAACGCTTAGTTT-TTAAAATCTCATTTGAAAACATCCTGCGCTGAAGG
131 AAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCGCTGAAGG
* ** * * *
156435 TCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCAGAGGACT
195 TCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCAAAAGACTTAATGATGACCCAGAGGACT
* * * *
156500 TACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCGTGCACTGAA
260 TACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATATCATTTGAAAACATCCTACACTAAA
*
156565 GGTCTTATGGATGGCCCGGAGGACTTACGC
325 GGTCTTATGGATGGCCCGAAGGACTTACGC
*
156595 ATCATGCTCGAAAGACTTACTGATGGCCCAGAGGACTTACAAATCAAGAAACCCCCA-AAGGCTT
1 ATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAA-CCCCAGAAGGCTT
*
156659 AGTTTCTAAAATCTCATTTGAAAACATCGTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTA
65 AGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTA
* * * *
156724 CAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTTATTTGAAAACATCCTACTCTGAGGG
130 CAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCGCTGAAGG
*
156789 TCTTATGGATGGCCCGAAGGACATACAAATCATGCTCAAAAGACTTAATGATGACCCAGAGGACT
195 TCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCAAAAGACTTAATGATGACCCAGAGGACT
* * *
156854 TAGAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAAAATATCCTACACTAAA
260 TACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATATCATTTGAAAACATCCTACACTAAA
*
156919 GGTCTTATGGATGGCCCGAAGGTCTTACGC
325 GGTCTTATGGATGGCCCGAAGGACTTACGC
*
156949 ATCATGCTCGAAAGACTTACTGATGGTCCGGAGGACTTACAAATCAAGAAA-CCCAGAAGGCTTA
1 ATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCAGAAGGCTTA
157013 GTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
66 GTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
* *
157078 AAATCAAGAAATCCCCGAACGCTTAGTTT-TTAAAATCTCATTTGAAAACATCCTGCGCTGAAGG
131 AAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCGCTGAAGG
* ** * * *
157142 TCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCAGAGGACT
195 TCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCAAAAGACTTAATGATGACCCAGAGGACT
* * * *
157207 TACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAA
260 TACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATATCATTTGAAAACATCCTACACTAAA
* * *
157272 GGTCTTATAGATGGCCCGAAGGAATTACAC
325 GGTCTTATGGATGGCCCGAAGGACTTACGC
*
157302 ATCATGCTCGAAAGACTTACTGATGGCCCAGAGGACTTACAAATCAAGAAAACCCCA-AAGGCTT
1 ATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAG-AAACCCCAGAAGGCTT
* * * *
157366 AGTTTCTAAAATATCATTTGAAAATATCCTGCACGGAAGGTCTTATGGATGACCCGAAGGACTTA
65 AGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTA
* *
157431 CAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAG
130 CAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCGCTGAAGG
*
157496 TTTTATGGATGGCCCGAAGGACTTACAAATCA
195 TCTTATGGATGGCCCGAAGGACTTACAAATCA
157528 AGAAACCCCC
Statistics
Matches: 1180, Mismatches: 96, Indels: 22
0.91 0.07 0.02
Matches are distributed among these distances:
352 8 0.01
353 621 0.53
354 494 0.42
355 47 0.04
356 10 0.01
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (354 bp):
ATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCAGAAGGCTTA
GTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
AAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCGCTGAAGGT
CTTATGGATGGCCCGAAGGACTTACAAATCATGCTCAAAAGACTTAATGATGACCCAGAGGACTT
ACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATATCATTTGAAAACATCCTACACTAAAG
GTCTTATGGATGGCCCGAAGGACTTACGC
Found at i:157305 original size:132 final size:132
Alignment explanation
Indices: 157059--158104 Score: 930
Period size: 132 Copynumber: 7.9 Consensus size: 132
157049 AGGTCTTATG
* * *
157059 GATGGCCC-GAAGGACTTACAAATCAAGAAATCCCCGAACGCTTAGTTTTTAAAATCTCATTTGA
1 GATGGCCCAG-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
* * *
157123 AAACATCCTGCGCTGAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTT
157188 ACT
130 ACT
* *
157191 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
157256 AACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGAATTACACATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
157321 CT
131 CT
* * *
157323 GATGGCCCAGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * ** **
157388 AATATCCTGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACA-A--AT-CAAG-AA-AC-CC
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
*
157446 CC
131 CT
* ** *** * * ** **
157448 GAAGGCTTAG-TTTCTTA-AATCTCATTTGAAAACATCCTGCACTGAAAGTTTTATGGATGGCCC
1 GATGGCCCAGAGGACTTACAA-ATCA--AG-AAAC--CC--C-C-G-AAGGCTTA--G-T--TTC
* * ** * * ** *** ** *
157511 GAAGGA-CTTACAAATCAAGAA-A-CC--C-CCGAAGG-CTTA--G-TTTCTTAAAATTTCAATT
50 TAA-AATC-T-CATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGC-CCGAA--GGACTT
* * * *
157566 GAAAACATCATGCACTGAAGGTCTTA-T
108 --ACACATCATGCTC-GAAAGACTTACT
*
157593 GGATGGCCC-GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATGTCATTTG
1 -GATGGCCCAG-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTG
* * * * * *
157657 AAAACATCCTGCACTGATGCTCTTATGGATGACCCGGAGGACTTACGCATAATGCTCGAAAGACT
64 AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACT
*
157722 TAAT
129 TACT
* * * *
157726 GATGGCCCCGAGGACTTATAAATCAAGAAACCCCCGAAGGCTTGGTTTCTAAAATATCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
157791 AATATCCTGCACTAAAGGTCTTATGGATGGCTCGAAGGACTTACACATCATGCTCGAAAGACATA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
157856 CT
131 CT
* * *
157858 GATGGCCCAAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTTTAAAATCTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
157923 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAATACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
157988 CT
131 CT
** * * *
157990 GATGGCCTGGAGGACTTACAAATCAAGAAATCCCTGAATGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * * *
158055 AGCATCCTACACTGAAAGTCTTACGGATGGCTCGAAGGACTTACAAATCA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCA
158105 AGAAACCCGC
Statistics
Matches: 728, Mismatches: 136, Indels: 100
0.76 0.14 0.10
Matches are distributed among these distances:
123 2 0.00
124 7 0.01
125 8 0.01
126 3 0.00
127 5 0.01
128 2 0.00
129 6 0.01
130 6 0.01
131 6 0.01
132 570 0.78
133 15 0.02
134 14 0.02
135 8 0.01
136 8 0.01
137 15 0.02
138 6 0.01
139 5 0.01
140 5 0.01
141 8 0.01
142 6 0.01
143 1 0.00
144 5 0.01
145 3 0.00
146 5 0.01
147 7 0.01
148 2 0.00
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (132 bp):
GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
CT
Found at i:157617 original size:91 final size:90
Alignment explanation
Indices: 157323--157702 Score: 582
Period size: 90 Copynumber: 4.2 Consensus size: 90
157313 AAGACTTACT
* *
157323 GATGGCCC-AGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGA
1 GATGGCCCGA-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGA
* *
157387 AAATATCCTGCACGGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* * *
157413 GATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAA
* *
157478 AACATCCTGCACTGAAAGTTTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
157503 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCAATTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATATCATTTGA
*
157568 AAACATCATGCACTGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
*
157594 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATGTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAA
* *
157659 AACATCCTGCACTGATGCTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
157684 GATGACCCGGAGGACTTAC
1 GATGGCCCGAAGGACTTAC
157703 GCATAATGCT
Statistics
Matches: 265, Mismatches: 23, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
90 180 0.68
91 85 0.32
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:157626 original size:181 final size:180
Alignment explanation
Indices: 157323--157702 Score: 593
Period size: 181 Copynumber: 2.1 Consensus size: 180
157313 AAGACTTACT
*
157323 GATGGCCC-AGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGA
1 GATGGCCCGA-AGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCAATTGA
* *
157387 AAATATCCTGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
65 AAACATCATGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* *
157452 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAG-TTTTATG
130 GCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTG-AAGCTCTTATG
* * *
157503 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCAATTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTC-TAAAATATCAATTGA
* *
157568 AAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
65 AAACATCATGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* *
157633 GCTTAGTTTCTAAAATGTCATTTGAAAACATCCTGCACTGATGCTCTTATG
130 GCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGCTCTTATG
* *
157684 GATGACCCGGAGGACTTAC
1 GATGGCCCGAAGGACTTAC
157703 GCATAATGCT
Statistics
Matches: 183, Mismatches: 14, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
180 47 0.26
181 136 0.74
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (180 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCAATTGAA
AACATCATGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
CTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGCTCTTATG
Found at i:158102 original size:90 final size:90
Alignment explanation
Indices: 157984--158194 Score: 298
Period size: 90 Copynumber: 2.3 Consensus size: 90
157974 GCTCGAAATA
* * * * *
157984 CTTACTGATGGCCTGGAGGACTTACAAATCAAGAAATCCC-TGAATGCTTAGTTTCTAAAATCTC
1 CTTACGGATGGCCCGAAGGACTTACAAATCAAGAAA-CCCGCGAAGGCTTAGTTTCTAAAATCTC
*
158048 ATTTGAAAGCATCCTACACTGAAAGT
65 ATTTGAAAACATCCTACACTGAAAGT
*
158074 CTTACGGATGGCTCGAAGGACTTACAAATCAAGAAACCCGCGAAGGCTTAGTTTCTAAAATCTCA
1 CTTACGGATGGCCCGAAGGACTTACAAATCAAGAAACCCGCGAAGGCTTAGTTTCTAAAATCTCA
* * *
158139 TTTGAAAATATCCTGCACTGAAGGT
66 TTTGAAAACATCCTACACTGAAAGT
* *
158164 CTTATGGATGGCCCGAAGGACTTACACATCA
1 CTTACGGATGGCCCGAAGGACTTACAAATCA
158195 TGCTCGAAAG
Statistics
Matches: 107, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
89 3 0.03
90 104 0.97
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.27
Consensus pattern (90 bp):
CTTACGGATGGCCCGAAGGACTTACAAATCAAGAAACCCGCGAAGGCTTAGTTTCTAAAATCTCA
TTTGAAAACATCCTACACTGAAAGT
Found at i:158145 original size:222 final size:222
Alignment explanation
Indices: 157858--158326 Score: 733
Period size: 222 Copynumber: 2.1 Consensus size: 222
157848 AAGACATACT
* *
157858 GATGGCCCAAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTTTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATCTCATTTGAA
* * *
157923 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAATACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
** * *
157988 CTGATGGCCTGGAGGACTTACAAATCAAGAAATCCCTGAATGCTTAGTTTCTAAAATCTCATTTG
131 CTGATGGCCCAGAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTAAAATCTCATTTG
*
158053 AAAGCATCCTACACTGAAAG-TCTTACG
196 AAAACATCCTACACTG-AAGCTCTTACG
* * *
158080 GATGGCTCGAAGGACTTACAAATCAAGAAACCCGCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATCTCATTTGAA
*
158145 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
*
158210 CTGATGGCCCAGAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTAAAATGTCATTTG
131 CTGATGGCCCAGAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTAAAATCTCATTTG
* * *
158275 AAAACATCCTGCACTGATGCTCTTATG
196 AAAACATCCTACACTGAAGCTCTTACG
* * *
158302 GATGACCCGGAGGACTTACACATCA
1 GATGGCCCGAAGGACTTACAAATCA
158327 TGCTCGAAAC
Statistics
Matches: 224, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
221 2 0.01
222 222 0.99
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (222 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
CTGATGGCCCAGAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTAAAATCTCATTTG
AAAACATCCTACACTGAAGCTCTTACG
Found at i:158153 original size:354 final size:354
Alignment explanation
Indices: 157726--158848 Score: 1352
Period size: 354 Copynumber: 3.1 Consensus size: 354
157716 AAGACTTAAT
* *
157726 GATGGCCCCG-AGGACTTATAAATCAAGAAACCCCCGAAGGCTTGGTTTCTAAAATATCATTTGA
1 GATGG-CCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGA
*
157790 AAATATCCTGCACTAAAGGTCTTATGGATGGCTCGAAGGACTTACACATCATGCTCGAAAGACAT
65 AAATATCCTGCACTAAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACAT
*
157855 ACTGATGGCCCAAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTTTAAAATCTCATTT
130 ACTGATGGCCCAAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATCTCATTT
* * * *
157920 GAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAATAC
195 GAAAACATCCTGCACTGAAGCTCTTATGGATGACCCGAAGGACTTACACATCATGCTCGAAACAC
* *
157985 TTACTGATGGCCTGGAGGACTTACAAATCAAGAAATCCC-TGAATGCTTAGTTTCTAAAATCTCA
260 TTACTGATGGCCCGGAGGACTTACAAATCAAGAAA-CCCGTGAAGGCTTAGTTTCTAAAATCTCA
*
158049 TTTGAAAGCATCCTACACTGAAAGTCTTACG
324 TTTGAAAACATCCTACACTGAAAGTCTTACG
* * *
158080 GATGGCTCGAAGGACTTACAAATCAAGAAACCCGCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAA
*
158145 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
66 AATATCCTGCACTAAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
* * * *
158210 CTGATGGCCCAGAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTAAAATGTCATTTG
131 CTGATGGCCCAAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATCTCATTTG
* *
158275 AAAACATCCTGCACTGATGCTCTTATGGATGACCCGGAGGACTTACACATCATGCTCGAAACACT
196 AAAACATCCTGCACTGAAGCTCTTATGGATGACCCGAAGGACTTACACATCATGCTCGAAACACT
158340 TACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCGTGAAGGCTTAGTTTCTAAAATCTCATT
261 TACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCGTGAAGGCTTAGTTTCTAAAATCTCATT
* * * *
158405 TGAAAATATCCTGCACTGAAGGTCTTATG
326 TGAAAACATCCTACACTGAAAGTCTTACG
158434 GATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATACTGATGGCCCAGAGGACTTACAAAT
1 GATGGCCCGAAGGACTTACA-A--A---TC--AAG--A-A---A---CCC------C--------
* * * * *
158499 CAAGAAATCCCCGAAGGCTTAGTTTCTAAAATGTCATTTGAAAACATCCTGCACTGATGCTCTTA
35 -----------CGAAGGCTTAGTTTCTAAAATATCATTTGAAAATATCCTGCACTAAAGGTCTTA
* * * * **
158564 TGGATGACCCGGAGGACTTACACATCATGCTCGAAACACTTACTGATGGCCCGGAGGACTTACAA
89 TGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATACTGATGGCCCAAAGGACTTACAA
* * * * * *
158629 ATCAAGAAACCCGCAAAGGTTTAGTTTCTAAAATCTCATTTGAAAATATCCTGCACTGAAGGTCT
154 ATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGCTCT
* * * *
158694 TATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATACTGATGGCCCAGAGGACTTAC
219 TATGGATGACCCGAAGGACTTACACATCATGCTCGAAACACTTACTGATGGCCCGGAGGACTTAC
* * * * *
158759 AAATCAAGAAAGCCC-CGAACGCTTAGTTTTTAAAATCTCATTTGAAAACATCCTGCACTGAAGG
284 AAATCAAGAAA-CCCGTGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTACACTGAAAG
*
158823 TCTTATG
348 TCTTACG
158830 GATGGCCCGAAGGACTTAC
1 GATGGCCCGAAGGACTTAC
158849 GCATCATGCT
Statistics
Matches: 671, Mismatches: 53, Indels: 48
0.87 0.07 0.06
Matches are distributed among these distances:
353 6 0.01
354 340 0.51
355 1 0.00
357 1 0.00
360 2 0.00
362 3 0.00
364 1 0.00
365 1 0.00
368 1 0.00
371 3 0.00
396 309 0.46
397 3 0.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.25
Consensus pattern (354 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAA
AATATCCTGCACTAAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACATA
CTGATGGCCCAAAGGACTTACAAATCAAGAAACCCCCGAACGCTTAGTTTCTAAAATCTCATTTG
AAAACATCCTGCACTGAAGCTCTTATGGATGACCCGAAGGACTTACACATCATGCTCGAAACACT
TACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCGTGAAGGCTTAGTTTCTAAAATCTCATT
TGAAAACATCCTACACTGAAAGTCTTACG
Found at i:158305 original size:132 final size:131
Alignment explanation
Indices: 158068--159379 Score: 1977
Period size: 132 Copynumber: 10.0 Consensus size: 131
158058 ATCCTACACT
* * * *
158068 GAAAGTCTTACGGATGGCTCGAAGGACTTACAAATCAAGAAACCCGCGAAGGCTTAGTTTCTAAA
1 GAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCC-CGAAGGCTTAGTTTCTAAA
*
158133 ATCTCATTTGAAAATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGC
65 ATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGC
158198 TC
130 TC
* *
158200 GAAAGACATACTGATGGCCCAGAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTAAA
1 GAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAA
* * * * *
158265 ATGTCATTTGAAAACATCCTGCACTGATGCTCTTATGGATGACCCGGAGGACTTACACATCATGC
65 ATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGC
158330 TC
130 TC
* *
158332 GAAACACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCGTGAAGGCTTAGTTTCTAAA
1 GAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCC-CGAAGGCTTAGTTTCTAAA
*
158397 ATCTCATTTGAAAATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGC
65 ATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGC
158462 TC
130 TC
* *
158464 GAAAGACATACTGATGGCCCAGAGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTAAA
1 GAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAA
* * * * *
158529 ATGTCATTTGAAAACATCCTGCACTGATGCTCTTATGGATGACCCGGAGGACTTACACATCATGC
65 ATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGC
158594 TC
130 TC
* * *
158596 GAAACACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCGCAAAGGTTTAGTTTCTAAA
1 GAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCC-CGAAGGCTTAGTTTCTAAA
*
158661 ATCTCATTTGAAAATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGC
65 ATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGC
158726 TC
130 TC
* * * *
158728 GAAAGACATACTGATGGCCCAGAGGACTTACAAATCAAGAAAGCCCCGAACGCTTAGTTTTTAAA
1 GAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAA
*
158793 ATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGC
65 ATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGC
158858 TC
130 TC
* * * *
158860 GAAATACTTACTGATGGCCTGGAGGACTTACAAATCAAGAAACCCTCAAAGGTTTAGTTTCTAAA
1 GAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCC-CGAAGGCTTAGTTTCTAAA
* *
158925 ATCTCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGGCCC-AGAGGACTTACGCATCATG
65 ATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGA-AGGACTTACACATCATG
158989 CTC
129 CTC
* *
158992 GAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCAAAGGTTTAGTTTCTAAA
1 GAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAA
* *
159057 ATCTCATTTGAAAATATCCTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGC
65 ATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGC
159122 TC
130 TC
* *
159124 AAAAGACTTACTGATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAA
1 GAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAA
* * * * *
159189 ATGTCATTTGAAAACATCC-GACACTGAAGATCTTATGGATGACCCGGAGGACTTACGCATCATG
65 ATCTCATTTGAAAACATCCTG-CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATG
159253 CTC
129 CTC
* * * * *
159256 GAAAGACTTACTGACGG-CCGGACGACTTACAAATTAAGAAACTCCCAAATGCTTAGTTTCTAAA
1 GAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAAC-CCCGAAGGCTTAGTTTCTAAA
* * *
159320 ATCTCATTTGAAAGCATCCTGCACTGAAGGTCTTATGGATGG--CGAAGGACATACAAATCA
65 ATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCA
159380 AGAAACCCCG
Statistics
Matches: 1075, Mismatches: 93, Indels: 27
0.90 0.08 0.02
Matches are distributed among these distances:
129 14 0.01
130 1 0.00
131 86 0.08
132 961 0.89
133 13 0.01
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.25
Consensus pattern (131 bp):
GAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTAAAA
TCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCT
C
Found at i:158987 original size:43 final size:42
Alignment explanation
Indices: 158939--159022 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 42
158929 CATTTGAAAA
* *
158939 CATCATGCACTGAAGGTCTTA-TGGATGGCCCAGAGGACTTACG
1 CATCATGCAC-GAAAGACTTACT-GATGGCCCAGAGGACTTACG
* *
158982 CATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTAC
1 CATCATGCACGAAAGACTTACTGATGGCCCAGAGGACTTAC
159023 AAATCAAGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
42 26 0.72
43 10 0.28
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (42 bp):
CATCATGCACGAAAGACTTACTGATGGCCCAGAGGACTTACG
Found at i:159539 original size:91 final size:89
Alignment explanation
Indices: 159279--159645 Score: 551
Period size: 91 Copynumber: 4.1 Consensus size: 89
159269 ACGGCCGGAC
* * * * *
159279 GACTTACAAATTAAGAAACTCCCAAATGCTTAGTTTCTAAAATCTCATTTGAAAGCATCCTGCAC
1 GACTTACAAATCAAGAAAC-CCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCAC
159344 TGAAGGTCTTATGGATGG--CGAAG
65 TGAAGGTCTTATGGATGGCCCGAAG
*
159367 GACATACAAATCAAGAAACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACT
1 GACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACT
* *
159432 GAAAGTTTTATGGATGGCCCGAAG
66 GAAGGTCTTATGGATGGCCCGAAG
* * *
159456 GACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTGATTTGAAAACATCATGCA
1 GACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCA
*
159521 CTGAAGGTCTTATAGATGGCCCGAAG
64 CTGAAGGTCTTATGGATGGCCCGAAG
* *
159547 GACTTACAAATAAAGAAACCCCGAAGGCTTAGTTTCTTAAACCTCATTTGAAAACATCCTG-ACT
1 GACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACT
*
159611 GAAGGTCTTATGGATGGCCTGAAG
66 GAAGGTCTTATGGATGGCCCGAAG
159635 GACTTACAAAT
1 GACTTACAAAT
159646 AATGCTCGAA
Statistics
Matches: 253, Mismatches: 22, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
87 57 0.23
88 53 0.21
89 41 0.16
90 40 0.16
91 62 0.25
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (89 bp):
GACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACT
GAAGGTCTTATGGATGGCCCGAAG
Found at i:159578 original size:180 final size:176
Alignment explanation
Indices: 159279--159645 Score: 563
Period size: 180 Copynumber: 2.1 Consensus size: 176
159269 ACGGCCGGAC
* * * * *
159279 GACTTACAAATTAAGAAACTCCCAAATGCTTAGTTTCTAAAATCTCATTTGAAAGCATCCTGCAC
1 GACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGCAC
* * *
159344 TGAAGGTCTTATGGATGGCGAAGGACATACAAATCAAGAAACCCCGAAGGCTTAGTTTCTTAAAT
66 TGAAGGTCTTATAGATGGCGAAGGACATACAAATAAAGAAACCCCGAAGGCTTAGTTTCTTAAAC
*
159409 CTCATTTGAAAACATCCTGCACTGAAAGTTTTATGGATGGCCCGAAG
131 CTCATTTGAAAACATCCTG-ACTGAAAGTCTTATGGATGGCCCGAAG
* * *
159456 GACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTGATTTGAAAACATCATGCA
1 GACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTC-TAAAATCTCATTTGAAAACATCATGCA
*
159521 CTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATAAAGAAACCCCGAAGGCTTAGTTTCTTA
65 CTGAAGGTCTTATAGATGG--CGAAGGACATACAAATAAAGAAACCCCGAAGGCTTAGTTTCTTA
* *
159586 AACCTCATTTGAAAACATCCTGACTGAAGGTCTTATGGATGGCCTGAAG
128 AACCTCATTTGAAAACATCCTGACTGAAAGTCTTATGGATGGCCCGAAG
159635 GACTTACAAAT
1 GACTTACAAAT
159646 AATGCTCGAA
Statistics
Matches: 172, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
177 33 0.19
178 41 0.24
179 35 0.20
180 63 0.37
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (176 bp):
GACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGCAC
TGAAGGTCTTATAGATGGCGAAGGACATACAAATAAAGAAACCCCGAAGGCTTAGTTTCTTAAAC
CTCATTTGAAAACATCCTGACTGAAAGTCTTATGGATGGCCCGAAG
Found at i:159948 original size:90 final size:90
Alignment explanation
Indices: 159665--159960 Score: 457
Period size: 90 Copynumber: 3.3 Consensus size: 90
159655 AACACTTACT
* * *
159665 GATGGTCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
159730 AACATCCTGCACTGAAGGTCTTTTG
66 AACATCCTGCACTGAAGGTCTTATG
* * * * * *
159755 GATGGCCCGGAGGACTTACAAATAAATAAACCCTCGAAGACTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
*
159820 AAACATCCTGCACGGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
159846 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
159911 AACATCCTGCACTGATGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
159936 GATAGCCTGAAGGACTTACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
159961 TGCTCGAAAG
Statistics
Matches: 184, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
90 102 0.55
91 82 0.45
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:160093 original size:132 final size:132
Alignment explanation
Indices: 159846--161019 Score: 1131
Period size: 131 Copynumber: 8.9 Consensus size: 132
159836 AGGTCTTATG
*
159846 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
159911 AACATCCTGCACTGATGGTCTTATGGATAGCCTGAAGGACTTACAAATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
159976 CT
131 CT
*
159978 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
160043 AACATCCTGCACTGAAGGTGTTATGGATGGCCCGAAGGATTTACGCATCATGCTCGAAAGACATA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
160108 CT
131 CT
*
160110 GATGGCCC-AGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCT-AAATATCATTTGA
1 GATGGCCCGA-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
* * * *
160173 AAATATCCTGCACTAAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTT
160238 ACT
130 ACT
* *
160241 AATGGCCCGGAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
** * * * *
160305 AACATCAGGCACTGAAGGTCTTATGGATGGTCCGAAGGACATACGCATCATGTTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
160370 CT
131 CT
* * *
160372 GATGGGCCGGAGGACTTACAAATCAAGAAA-CCCCGAATGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * * *
160436 AGCATCC-GACACTGAAGGTGTTATGGATGGCCCTAAGGACTTACAAATCAAGAAAC-CCACGAA
66 AACATCCTG-CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATG---CTCGA--AA
*
160499 GGCTTA--
125 GACTTACT
** *** ** * * * * * * ** *
160505 G-TTTCTTAAATCTCATTTGAAAATATCATG----CTCTGAAAGTCTTATGGATGGCCTGAAGGA
1 GATGGCCCGAA--GGACTT-ACAA-ATCAAGAAACCCCCG-AAGGCTTA--G-T-TTCT-AA-AA
** * * ** *** ** * *
160565 -CTTACAAAT-AAAGA-AACC--C-CCGAAGG-CTTA--G-TTTCTTAAAATTTCATTTGAAAAC
55 TC-T-CATTTGAAA-ACATCCTGCACTGAAGGTCTTATGGATGGC-CCGAA--GGACTT--ACAC
* * *
160620 ATCATGCACTGAAGGTCTTA-T
112 ATCATGCTC-GAAAGACTTACT
* *
160641 GGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTTATTTGA
1 -GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
* * * * * *
160706 AAACATCCTACTCTGAGGGTCTTATGGATGGCCCGAAGGACATACAAATCATGCTCAAAAGACTT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTT
*
160771 AAT
130 ACT
* * *
160774 GATGACCC-AGAGGACTTAGAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGA
1 GATGGCCCGA-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
* * * * *
160838 AAATATCCTACACTAAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTT
160903 ACT
130 ACT
* * *
160906 GATGGTCCGGAGGACTTACAAATCAAGAAA-CCCAGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
160970 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCA
161020 AGAAATCCCC
Statistics
Matches: 844, Mismatches: 148, Indels: 101
0.77 0.14 0.09
Matches are distributed among these distances:
130 23 0.03
131 361 0.43
132 320 0.38
133 22 0.03
134 23 0.03
135 27 0.03
136 16 0.02
137 19 0.02
138 19 0.02
139 3 0.00
140 8 0.01
141 3 0.00
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.25
Consensus pattern (132 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
CT
Done.