Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006189.1 Hibiscus syriacus cultivar Beakdansim tig00014728_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 980383
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
File 3 of 7
Found at i:160654 original size:91 final size:90
Alignment explanation
Indices: 160372--160756 Score: 549
Period size: 90 Copynumber: 4.3 Consensus size: 90
160362 AAGACTTACT
* * * *
160372 GATGGGCCGGAGGACTTACAAATCAAGAAA-CCCCGAATGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * *
160436 AGCATC-CGACACTGAAGGTGTTATG
66 AACATCATG-CACTGAAGGTCTTATG
* *
160461 GATGGCCCTAAGGACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * *
160526 AATATCATGCTCTGAAAGTCTTATG
66 AACATCATGCACTGAAGGTCTTATG
* * *
160551 GATGGCCTGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
160616 AAACATCATGCACTGAAGGTCTTATG
65 AAACATCATGCACTGAAGGTCTTATG
*
160642 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTTATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * *
160707 AACATCCTACTCTGAGGGTCTTATG
66 AACATCATGCACTGAAGGTCTTATG
*
160732 GATGGCCCGAAGGACATACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
160757 TGCTCAAAAG
Statistics
Matches: 264, Mismatches: 29, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
89 27 0.10
90 152 0.58
91 85 0.32
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCATGCACTGAAGGTCTTATG
Found at i:160684 original size:181 final size:179
Alignment explanation
Indices: 160372--161632 Score: 573
Period size: 179 Copynumber: 7.1 Consensus size: 179
160362 AAGACTTACT
* * * *
160372 GATGGGCCGGAGGACTTACAAATCAAGAAACCCCGAATGCTTAGTTTCTAAAATCTCATTTGAAA
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
* * *
160437 GCATCCGACACTGAAGGTGTTATGGATGGCCCTAAGGACTTACAAATCAAGAAACCCACGAAGGC
66 ACATCCGACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGGC
* *
160502 TTAGTTTCTTAAATCTCATTTGAAAATATCATGCTCTGAAAGTCTTATG
131 TTAGTTTCTTAAATCTCATTTGAAAACATCATACTCTGAAAGTCTTATG
* *
160551 GATGGCCTGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATAAAGAAA-CCCCGAAGGCTTAGTTTC-TAAAATCTCATTTGA
* *
160616 AAACATCATG-CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAA
64 AAACATC-CGACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAA
* * **
160680 GGCTTAGTTTCTTAAATCTTATTTGAAAACATCCTACTCTGAGGGTCTTATG
128 GGCTTAGTTTCTTAAATCTCATTTGAAAACATCATACTCTGAAAGTCTTATG
* * * * ** * ** ** * *** *
160732 GATGGCCCGAAGGACATACAAATCATG---CTCAAAAGACTTAATGATGACCCAGAGGAC-TTAG
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCGAAGGCTT-A-G-TTTCTAAAATCTCATTTG
* **** * * ** * * ** *
160793 AAATCAAGAAACCCCCGAAGG-CTTA--G-T--TTCTAA--A-ATATCATTTGAA-AATATCCTA
63 AAAACATCCGA-CACTGAAGGTCTTATGGATGGCCCGAAGGACTTA-CAAATCAAGAA-A-CC--
* ** *** ** ** * *
160848 CACTAAAGGTCTTATGGATGGCCCGAAGGTC--TT--ACGCATCATGCTC-GAAAGACTTACT-
122 CAC-GAAGG-CTTA--G-TTTCTTAAATCTCATTTGAAAACATCATACTCTGAAAGTCTTA-TG
* * * *
160906 GATGGTCCGGAGGACTTACAAATCAAGAAACCCAGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
*
160971 ACATCCTG-CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAATCCC-CGAAC
66 ACATCC-GACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAA-CCCACGAAG
* * * *
161034 GCTTAGTTT-TTAAAATCTCATTTGAAAACATCCTGCGCTGAAGGTCTTATG
129 GCTTAGTTTCTT-AAATCTCATTTGAAAACATCATACTCTGAAAGTCTTATG
* ** * * * * ** * *
161085 GATGACCCGAAGGACTTACGCATCATG----CTCGAAAGACTTACTGATGGCCCAGAGGA-CTTA
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCG-AAGGCTTA--G-T-TTCTA-A-AATC-T-
** * ** ** * * ** *
161145 CAAATCAAGAA-A-CC--C-CCAAAGG-CTTA--G-T--TTCTAA--AATCT-CATTTGAA-AAC
57 CATTTGAA-AACATCCGACACTGAAGGTCTTATGGATGGCCCGAAGGACT-TACAAATCAAGAA-
* ** **** ** * ** * * *
161195 ATCGTGCACTGAAGGTCTTATGGATGGCCCGGA--GGACTT--ACGCATCATGCT-AGAAAGACT
119 A-C--CCAC-GAAGG-CTTA--G-TTTCTTAAATCTCATTTGAAAACATCATACTCTGAAAGTCT
161255 TACT-
176 TA-TG
* *
161259 GATGGCCC---GGA-TTACAAATCAAGAAACCCCTAAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCC-GAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
161320 AACATCCTG-CACTGAAGGTCTTATGGATGGACCAAAGGACTTACAAATCAAGAAACCC-CGTAG
65 AACATCC-GACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAG
* * * * *
161383 GCTTAGTTTCTTAAATCTCATTTGAAAGCATCCTGCACTGAAGGTCTTATG
129 GCTTAGTTTCTTAAATCTCATTTGAAAACATCATACTCTGAAAGTCTTATG
* *
161434 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATAAAGAAA-CCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
161499 AACATCCTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
65 AACATCCGACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGG
* * * * * * *
161564 CTTATTTTCTTAAATTTCATTTGAAAATATCCTGCACTGAAGGTCTTATG
130 CTTAGTTTCTTAAATCTCATTTGAAAACATCATACTCTGAAAGTCTTATG
*
161614 GATGACCCGAAGGACTTAC
1 GATGGCCCGAAGGACTTAC
161633 GCATCATGCT
Statistics
Matches: 781, Mismatches: 204, Indels: 193
0.66 0.17 0.16
Matches are distributed among these distances:
166 2 0.00
167 6 0.01
168 4 0.01
169 2 0.00
170 21 0.03
171 27 0.03
172 11 0.01
173 11 0.01
174 89 0.11
175 63 0.08
176 21 0.03
177 30 0.04
178 39 0.05
179 185 0.24
180 101 0.13
181 142 0.18
182 15 0.02
183 10 0.01
184 2 0.00
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (179 bp):
GATGGCCCGAAGGACTTACAAATAAAGAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
ACATCCGACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGGC
TTAGTTTCTTAAATCTCATTTGAAAACATCATACTCTGAAAGTCTTATG
Found at i:160890 original size:534 final size:532
Alignment explanation
Indices: 159004--161103 Score: 1790
Period size: 534 Copynumber: 3.9 Consensus size: 532
158994 AAGACTTACT
* * * *
159004 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCAAAGGTTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCT-AAATATCATTTGAA
* * * *
159069 AATATCCTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCAAAAGACTTA
65 AACATCCTACACTAAAGGTCTTATGGATGGCCCGAAGGACATACAAATCATGCTCAAAAGACTTA
* * * *
159134 CTGATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATGTCATTTG
130 ATAATGACCCAGAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAAATATCATTTG
* * * * * *
159199 AAAACATCCGACACTGAAGATCTTATGGATGACCCGGAGGACTTACGCATCATGCTCGAAAGACT
194 AAAACATCAGACACTAAAGGTCTTATGGATGGCCCGAAGGACATACGCATCATGCTCGAAAGACT
* * * *
159264 TACTGA-CGGCCGGACGACTTACAAATTAAGAAACTCCCA-AATGCTTAGTTTCTAAAATCTCAT
259 TACTGATGGGCCGGAGGACTTACAAATCAAGAAA--CCCAGAAGGCTTAGTTTCTAAAATCTCAT
* *
159327 TTGAAAGCATCCTGCACTGAAGGTCTTATGGATGG--CGAAGGACATACAAATCAAGAAA-CCCC
322 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAATCCCC
* * * * *
159389 GAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCACTGAAAGTTTTATGGATGGCCCG
387 GAACGCTTAGTTT-TTAAAATCTCATTTGAAAACATCATGCGCTGAAAGTCTTATGGATGACCCG
* *
159453 AAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTGATTTGAAAACATCAT
451 AAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCAT
*
159518 GCACTGAAGGTCTTATA
516 GCACTGAAGGTCTTATG
* **
159535 GATGGCCC-GAAGGACTTACAAATAAAGAAA-CCCCGAAGGCTTAGTTTCTTAAACCTCATTTGA
1 GATGGCCCAG-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAATATCATTTGA
* * * * * * *
159598 AAACATCCT-GACTGAAGGTCTTATGGATGGCCTGAAGGACTTACAAATAATGCTCGAAACACTT
64 AAACATCCTACACTAAAGGTCTTATGGATGGCCCGAAGGACATACAAATCATGCTCAAAAGACTT
* * ** * *
159662 ACTGATGGTCC-GAAGGACTTACAAATCAAGAAACCCCCGAAGGATTAGTTTCTAAAATCTCATT
129 AATAATGACCCAG-AGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAAATATCATT
* * * * * ** * *
159726 TGAAAACATCCTG-CACTGAAGGTCTTTTGGATGGCCCGGAGGACTTACAAATAAATAAACCCTC
192 TGAAAACAT-CAGACACTAAAGGTCTTATGGATGGCCCGAAGGACATACGCAT-CAT----GCTC
** ** * * * ** *
159790 G-AAGACTTA--G-T--TTCTTA-AAATTTCATTTGAA-AACATCCTGCACGGAAGGTCTTATGG
251 GAAAGACTTACTGATGGGCCGGAGGACTTACAAATCAAGAA-A-CC--CA--GAAGG-CTTA--G
** * * ** * * ** **
159847 ATGGCCCGAAGGA-CTTACAAATCAAGAA-A-CC--C-CCGAAGG-CTTA--G-T-TTCTTAA--
307 -T--TTCTAA-AATC-T-CATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGG
** * * * * * * * ** * * *
159899 A-TCT-CATTTGAA-AACAT-CCTGCACTG-ATGGTCTTATGGATAGCCTGAAGGACTT-ACAA-
365 ACT-TACAAATCAAGAA-ATCCCCGAAC-GCTTAGT-TT-T-TAAAATCT----CATTTGAAAAC
* * * * *
159957 ATCATGCTC-GAAAGACTTACT-GATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGAAGGCT
420 ATCATGCGCTGAAAGTCTTA-TGGATGACCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCT
* * *
160020 TAGTTTC-TAAAATCTCATTTGAAAACATCCTGCACTGAAGGTGTTATG
484 TAGTTTCTTAAAATTTCATTTGAAAACATCATGCACTGAAGGTCTTATG
*
160068 GATGGCCCGAAGGATTTACGCATCATGCTCGAAAGACATACTGATGGCCCAGAGGACTTACAAAT
1 GATGGCCC--A-G----A-GGA-C-T--T------ACA-A---AT----CA-A-G----A-----
* *
160133 CAAGAAACCCCCGAAGGCTTAGTTTCTAAATATCATTTGAAAATATCCTGCACTAAAGGTCTTAT
29 -----AACCCCCGAAGGCTTAGTTTCTAAATATCATTTGAAAACATCCTACACTAAAGGTCTTAT
* * ** * * * *
160198 GGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTACTAATGGCCCGGAGGACTTACAAA
89 GGATGGCCCGAAGGACATACAAATCATGCTCAAAAGACTTAATAATGACCCAGAGGACTTACAAA
* * *
160263 TCAAGAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCAGGCACTGAAGGTCTTA
154 TCAAGAAACCCCGAAGGCTTAGTTTCTAAAATATCATTTGAAAACATCAGACACTAAAGGTCTTA
* *
160328 TGGATGGTCCGAAGGACATACGCATCATGTTCGAAAGACTTACTGATGGGCCGGAGGACTTACAA
219 TGGATGGCCCGAAGGACATACGCATCATGCTCGAAAGACTTACTGATGGGCCGGAGGACTTACAA
* * * *
160393 ATCAAGAAACCCCGAATGCTTAGTTTCTAAAATCTCATTTGAAAGCATCC-GACACTGAAGGTGT
284 ATCAAGAAACCCAGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTG-CACTGAAGGTCT
* *
160457 TATGGATGGCCCTAAGGACTTACAAATCAAGAAA-CCCACGAAGGCTTAGTTTCTT-AAATCTCA
348 TATGGATGGCCCGAAGGACTTACAAATCAAGAAATCCC-CGAACGCTTAGTTT-TTAAAATCTCA
* * * *
160520 TTTGAAAATATCATGCTCTGAAAGTCTTATGGATGGCCTGAAGGACTTACAAATAAAGAAACCCC
411 TTTGAAAACATCATGCGCTGAAAGTCTTATGGATGACCCGAAGGACTTACAAATAAAGAAACCCC
160585 CGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACTGAAGGTCTTATG
476 CGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACTGAAGGTCTTATG
* *
160642 GATGGCCC-GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTTATTTGA
1 GATGGCCCAG-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAATATCATTTGA
* * *
160706 AAACATCCTACTCTGAGGGTCTTATGGATGGCCCGAAGGACATACAAATCATGCTCAAAAGACTT
64 AAACATCCTACACTAAAGGTCTTATGGATGGCCCGAAGGACATACAAATCATGCTCAAAAGACTT
* *
160771 AATGATGACCCAGAGGACTTAGAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTT
129 AATAATGACCCAGAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAAATATCATTT
* ** * *
160836 GAAAATATCCTACACTAAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGAC
193 GAAAACATCAGACACTAAAGGTCTTATGGATGGCCCGAAGGACATACGCATCATGCTCGAAAGAC
*
160901 TTACTGATGGTCCGGAGGACTTACAAATCAAGAAACCCAGAAGGCTTAGTTTCTAAAATCTCATT
258 TTACTGATGGGCCGGAGGACTTACAAATCAAGAAACCCAGAAGGCTTAGTTTCTAAAATCTCATT
160966 TGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAATCCCCG
323 TGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAATCCCCG
* *
161031 AACGCTTAGTTTTTAAAATCTCATTTGAAAACATCCTGCGCTGAAGGTCTTATGGATGACCCGAA
388 AACGCTTAGTTTTTAAAATCTCATTTGAAAACATCATGCGCTGAAAGTCTTATGGATGACCCGAA
161096 GGACTTAC
453 GGACTTAC
161104 GCATCATGCT
Statistics
Matches: 1257, Mismatches: 189, Indels: 243
0.74 0.11 0.14
Matches are distributed among these distances:
527 5 0.00
528 10 0.01
529 157 0.12
530 54 0.04
531 35 0.03
532 25 0.02
533 159 0.13
534 327 0.26
535 17 0.01
536 10 0.01
537 5 0.00
538 4 0.00
539 4 0.00
540 7 0.01
541 3 0.00
542 2 0.00
543 1 0.00
545 1 0.00
546 1 0.00
547 1 0.00
548 2 0.00
551 3 0.00
552 3 0.00
555 3 0.00
556 3 0.00
559 1 0.00
560 1 0.00
561 1 0.00
562 1 0.00
563 1 0.00
564 7 0.01
565 6 0.00
566 6 0.00
567 2 0.00
568 7 0.01
569 4 0.00
570 7 0.01
571 16 0.01
572 15 0.01
573 60 0.05
574 55 0.04
575 95 0.08
576 111 0.09
577 17 0.01
578 2 0.00
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (532 bp):
GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAATATCATTTGAAA
ACATCCTACACTAAAGGTCTTATGGATGGCCCGAAGGACATACAAATCATGCTCAAAAGACTTAA
TAATGACCCAGAGGACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTAAAATATCATTTGAA
AACATCAGACACTAAAGGTCTTATGGATGGCCCGAAGGACATACGCATCATGCTCGAAAGACTTA
CTGATGGGCCGGAGGACTTACAAATCAAGAAACCCAGAAGGCTTAGTTTCTAAAATCTCATTTGA
AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAATCCCCGAAC
GCTTAGTTTTTAAAATCTCATTTGAAAACATCATGCGCTGAAAGTCTTATGGATGACCCGAAGGA
CTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACT
GAAGGTCTTATG
Found at i:161059 original size:90 final size:89
Alignment explanation
Indices: 160906--161103 Score: 324
Period size: 90 Copynumber: 2.2 Consensus size: 89
160896 AAGACTTACT
* * *
160906 GATGGTCCGGAGGACTTACAAATCAAGAAACCCAGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCAGAACGCTTAGTTTCTAAAATCTCATTTGAAA
160971 ACATCCTGCACTGAAGGTCTTATG
66 ACATCCTGCACTGAAGGTCTTATG
* *
160995 GATGGCCCGAAGGACTTACAAATCAAGAAATCCCCGAACGCTTAGTTTTTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAA-CCCAGAACGCTTAGTTTCTAAAATCTCATTTGAA
*
161060 AACATCCTGCGCTGAAGGTCTTATG
65 AACATCCTGCACTGAAGGTCTTATG
*
161085 GATGACCCGAAGGACTTAC
1 GATGGCCCGAAGGACTTAC
161104 GCATCATGCT
Statistics
Matches: 101, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
89 28 0.28
90 73 0.72
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (89 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCAGAACGCTTAGTTTCTAAAATCTCATTTGAAA
ACATCCTGCACTGAAGGTCTTATG
Found at i:161232 original size:132 final size:132
Alignment explanation
Indices: 160995--165337 Score: 3763
Period size: 132 Copynumber: 32.8 Consensus size: 132
160985 AGGTCTTATG
* * *
160995 GATGGCCC-GAAGGACTTACAAATCAAGAAATCCCCGAACGCTTAGTTTTTAAAATCTCATTTGA
1 GATGGCCCAG-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
* *
161059 AAACATCCTGCGCTGAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTT
161124 ACT
130 ACT
*
161127 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
161192 AACATCGTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTAGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
161257 CT
131 CT
**
161259 GATGGCCC---GGA-TTACAAATCAAGAAACCCCTAAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * ** *
161320 AACATCCTGCACTGAAGGTCTTATGGATGGACCAAAGGACTTA--CA-AAT-CAAG-AA-AC--C
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
*
161377 CC
131 CT
** *** * * **
161379 G-TAGGCTTAG-TTTCTTA-AATCTCATTTGAAAGCATCCTGCACTGAAGGTCTTATGGATGGCC
1 GAT-GGCCCAGAGGACTTACAA-ATCA--AGAAA-C--CC--C-C-GAAGG-CTTA--G-T--TT
* * ** * * ** *** ** *
161441 CGAAGGA-CTTACAAATCAAGAA-A-CC--C-CCGAAGG-CTTA--G-TTTCTTAAATCTCATTT
49 CTAA-AATC-T-CATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAA--GGACTT
** * * * * *
161496 GAAAACATCCTACACTGAAGGTCTTA-T
108 --ACGCATCATGCTC-GAAAGACTTACT
* * *
161523 GGATGGCCC-GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTATTTTCTTAAATTTCATTTG
1 -GATGGCCCAG-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTG
* *
161587 AAAATATCCTGCACTGAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACT
64 AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACT
161652 TACT
129 TACT
*
161656 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
161721 AACATCGTGCACTAAAGGTCTTATGGATGGCCCGAAGGACTTACACATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
161786 CT
131 CT
* * *
161788 GATGGCCCAGAGGACTTACAAATAAAGAAACCCCCGAAGGCTTATTTTCTAAAATGTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
161853 AACATCCTGCACTGAAGCTCTTATGGATGGCCCGGAGGACTTACGTATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
161918 CT
131 CT
*
161920 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
161985 AACATCCTGCACTGAAGGTCTTATGGTTGGCCCGAATGACTTACGAATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
162050 CT
131 CT
*
162052 GATGGCCCAAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
162117 AACATCCTACACTGAAGGTCTTATGGATGGCCCGGAA-GACTTACGCATCATGCTCGAAAGACTT
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCC-GAAGGACTTACGCATCATGCTCGAAAGACTT
*
162181 ATT
130 ACT
* * *
162184 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTTTAAAATCTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * *
162249 AGCATCCTACACTGAAGGTTTTATGGATGGCCCTAAGGTCTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
162314 CT
131 CT
* * * *
162316 GATGGCCCGGAGGAGTTACAAATCAAGAAACCCCCAAAGGCATAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* ** * *
162381 AACATCCTGCACTGAAGGTGTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCG-AAG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATG-----CTCGAAAG
*
162445 GCTTA--
126 ACTTACT
** * * ** ** ** ** * * ** ** **
162450 G-T-TTCTAAAATATCATTTGAAAGT--ATCATGCACTGAAGGTCTTATGGATGGCCCAAAGGTC
1 GATGGCCCAGAGGA-C-TTACAAA-TCAAGAAACCCCCGAAGG-CTTA--G-TTTCTAAAATCTC
** * * * * * * **
162511 --TT--ACGCATCATGCTC-GAAAGACTTACT-GATGGCCCGGAGGACTTA--CA-AATG-AAG-
59 ATTTGAAAACATCCTGCACTGAAGGTCTTA-TGGATGGCCCGAAGGACTTACGCATCATGCTCGA
** *
162565 AA-AC-CCCC
123 AAGACTTACT
* ** *** * **
162573 GAAGGCTTAG-TTTC-TA-AAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCC
1 GATGGCCCAGAGGACTTACAAA--TCA--AG-AAAC--CC--C-C-GAAGG-CTTA--G-T--TT
* * ** * * * * ** ** *
162635 CGAAGGA-CTTACAAATCAAGAA-A-CC--C-CCGAAGG-ATTA--G-T-TCCTTAAATCTCATT
49 CTAA-AATC-T-CATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGCC-CGAA--GGACT
** * * * *
162689 TGAAAACATCCTGCACTAAAGGTCTTA-T
107 T--ACGCATCATGCTCGAAA-GACTTACT
* * *
162717 GGATGGCCC-GAAGGACTTACAAATCAAGAAACCCCCGAATGCTTATTTTCTAAAATGTCATTTG
1 -GATGGCCCAG-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTG
* * *
162781 AAAACATCATGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCACGCTCGAAAGACT
64 AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACT
162846 TACT
129 TACT
*
162850 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* **
162915 AACATCCTGGACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
162980 CT
131 CT
* * *
162982 GATGGCCCGGAGGACTTACAAATCAAGAAACCCTCGAAGGCTTAGTTTCGAAAATCTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
163047 AATATCATGCACTGAAGGTCTTATGGATGGACCGAAGGACTTACGCATCATGCTGGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
163112 CT
131 CT
* * * *
163114 GATGGGCCGGAGGACTTACAAATCAAGAAACCCCCGAAGACTTAGTTTCTAAAATATCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
163179 AATATCCTGCACTAAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
163244 CT
131 CT
*
163246 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * **
163311 AACATCCTGGACTGAAGGTCTTATGGATGGCCCGAAGGACTTTCAAATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
163376 CT
131 CT
* * * *
163378 GTTGGCCCGGAGGACTTACAAATCAAGAAACCCTCGAAGGCTTAGTTTCAAAAATCTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
163443 AACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
163508 CT
131 CT
*
163510 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTT-AA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
163574 AAGCATTCTGGACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATTATGTTCGAAAGACTT
66 AA-CATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTT
163639 ACT
130 ACT
* * *
163642 GATGGCCTAGAGGACTTACAAACCAAGAAATCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
163707 AACATCCTGCACTGAAGGTCTTATGGATGGCCAGGAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
*
163772 AT
131 CT
* * * *
163774 GATAGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
163839 AACATCCTGCACTGAAGGTCTTATGGATGGCCTGAAGGAATTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
163904 CT
131 CT
* *
163906 GATGGCCC--AGGACTTACAAATCAAGAAAACCCC-AAGGCTTAGTTTCTAAAATATCA-TTG-A
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * ** * *
163966 AA-ATCCTGCACAGAAGGTCTTATGGATGACCCGAAGAACTTACAAATCAAGAAACCCCCG-AAG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATG-----CTCGAAAG
*
164029 GCTTA-T
126 ACTTACT
** ** ** * * ** * * *
164035 --TTTCTTA-A--A-TCT-CATTTGAA-AACATCCTGCACTGAAAGTTTTATGGATGGCTCGGAG
1 GATGGCCCAGAGGACT-TACAAATCAAGAA-A-CC--C-CCG-AAGGCTTA--G-T--TTC-TAA
* ** * * ** *** ** * *
164092 GA-CTTACAAAT-AAAGA-AACC--C-CCGAAGG-CTTAT---TTTCTTAAAATTTCATTTGAAA
53 AATC-T-CATTTGAAA-ACATCCTGCACTGAAGGTCTTATGGATGGC-CCGAA--GGACTT--AC
* * * * *
164147 ACATCTTGCACGGAAGGTCTTA-T
110 GCATCATGCTC-GAAAGACTTACT
*
164170 GGATGGCCC-GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTG
1 -GATGGCCCAG-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTG
* **
164234 AAAACATCCTGCACTGAGGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACT
64 AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACT
*
164299 TACC
129 TACT
* * *
164303 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
164368 AACATCCTCCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCTAGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
164433 CT
131 CT
* ** *
164435 GATGGCCCAGAGGACTTACAAATCAAGAAAACCCTAAAGGCTTAGTTTCTAAAATATCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * * ** **
164500 AATATCCTGCACAGAAGGTCTTATAGATGACCCGAAGGACTTA--CA-AAT-CAAG-AA-AC-CC
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
*
164558 CC
131 CT
* ** *** * * ** **
164560 GAAGGCTTAG-TTTCTTA-AATCTCATTTGAAAACATCCTGCACTGAAAGTTTTATGGATGGCCC
1 GATGGCCCAGAGGACTTACAA-ATCA--AG-AAAC--CC--C-C-G-AAGGCTTA--G-T--TTC
* * ** * * ** *** ** *
164623 GAAGGA-CTTACAAATCAAGAA-A-CC--C-CCGAAGG-CTTA--G-TTTCTTAAAATTTTATTT
50 TAA-AATC-T-CATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGC-CCGAA--GGACTT
** * * *
164678 GAAAACATCATGCATTGAAGGTCTTA-T
108 --ACGCATCATGC-TCGAAAGACTTACT
** *
164705 GGATGGCCC-GAAGGACTTACAAATCAAGAAACCGTCGAAGGCTTAGTTTCTTAAATCTCATTTG
1 -GATGGCCCAG-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTG
*
164769 AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCAAAGGACTTACGCATCATGCTCGAAAGACT
64 AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACT
*
164834 TAAT
129 TACT
* *
164838 GATGGCCCAGAGGACTTATAAATCAAGAAACCCCCGAAGGCTT-GATTTCTAAAATATCATTTGA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAG-TTTCTAAAATCTCATTTGA
* * * *
164902 AAATATCCTGCACTAAAGGTCTTAAGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTT
164967 ACT
130 ACT
** *
164970 GATGGCCTGGAGGACTTACAAATCAAGAAACCCCCGAAAGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
165035 AACATCCTGCACTGAAGGTCTTATGGATGGCCCAAAGGACTTACGCTTCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
165100 CT
131 CT
* * *
165102 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGACTTTGTTTCTAAAATCTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
165167 AGCATCCTGCACTGAAGGTCTTATGGATGACCTGAAGGTCTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
165232 CT
131 CT
** *
165234 GATGTTCCGGAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
165298 AACGTCCTGCACTGAAGGTCTTATGGATGGCCTGAAGGAC
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAC
165338 CTACAAATCA
Statistics
Matches: 3420, Mismatches: 556, Indels: 471
0.77 0.13 0.11
Matches are distributed among these distances:
119 1 0.00
120 8 0.00
121 2 0.00
122 5 0.00
123 15 0.00
124 13 0.00
125 23 0.01
126 51 0.01
127 10 0.00
128 102 0.03
129 46 0.01
130 53 0.02
131 102 0.03
132 2508 0.73
133 102 0.03
134 48 0.01
135 43 0.01
136 49 0.01
137 66 0.02
138 31 0.01
139 19 0.01
140 22 0.01
141 20 0.01
142 14 0.00
143 9 0.00
144 13 0.00
145 12 0.00
146 17 0.00
147 11 0.00
148 5 0.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (132 bp):
GATGGCCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
CT
Found at i:161520 original size:90 final size:90
Alignment explanation
Indices: 161270--161632 Score: 611
Period size: 90 Copynumber: 4.0 Consensus size: 90
161260 ATGGCCCGGA
** *
161270 TTACAAATCAAGAAACCCCTAAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGA
1 TTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGA
* *
161335 AGGTCTTATGGATGGACCAAAGGAC
66 AGGTCTTATGGATGGCCCGAAGGAC
* *
161360 TTACAAATCAAGAAA-CCCCGTAGGCTTAGTTTCTTAAATCTCATTTGAAAGCATCCTGCACTGA
1 TTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGA
161424 AGGTCTTATGGATGGCCCGAAGGAC
66 AGGTCTTATGGATGGCCCGAAGGAC
*
161449 TTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTACACTGA
1 TTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGA
161514 AGGTCTTATGGATGGCCCGAAGGAC
66 AGGTCTTATGGATGGCCCGAAGGAC
* * *
161539 TTACAAATCAAGAAACCCCCGAAGGCTTATTTTCTTAAATTTCATTTGAAAATATCCTGCACTGA
1 TTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGA
*
161604 AGGTCTTATGGATGACCCGAAGGAC
66 AGGTCTTATGGATGGCCCGAAGGAC
161629 TTAC
1 TTAC
161633 GCATCATGCT
Statistics
Matches: 257, Mismatches: 15, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
89 82 0.32
90 175 0.68
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (90 bp):
TTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGA
AGGTCTTATGGATGGCCCGAAGGAC
Found at i:162469 original size:90 final size:90
Alignment explanation
Indices: 162316--162514 Score: 299
Period size: 90 Copynumber: 2.2 Consensus size: 90
162306 AAGACTTACT
* * *
162316 GATGGCCCGGAGGAGTTACAAATCAAGAAACCCCCAAAGGCATAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCAAAGGCATAGTTTCTAAAATATCATTTGAA
* *
162381 AACATCCTGCACTGAAGGTGTTATG
66 AACATCATGCACTGAAGGTCTTATG
* *
162406 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCAAAGGCATAGTTTCTAAAATATCATTTGAA
**
162471 AGTATCATGCACTGAAGGTCTTATG
66 AACATCATGCACTGAAGGTCTTATG
* *
162496 GATGGCCCAAAGGTCTTAC
1 GATGGCCCGAAGGACTTAC
162515 GCATCATGCT
Statistics
Matches: 98, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
90 98 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCAAAGGCATAGTTTCTAAAATATCATTTGAA
AACATCATGCACTGAAGGTCTTATG
Found at i:162486 original size:222 final size:222
Alignment explanation
Indices: 162178--163090 Score: 952
Period size: 222 Copynumber: 4.1 Consensus size: 222
162168 GCTCGAAAGA
* * * *
162178 CTTATTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTTTAAAATCTCA
1 CTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCA
* * *
162243 TTTGAAAGCATCCTACACTGAAGGTTTTATGGATGGCCCTAAGGTCTTACGCATCATGCTCGAAA
66 TTTGAAAGCATCCTGCACTGAAGGTCTTATGGATGGCCCAAAGGTCTTACGCATCATGCTCGAAA
*
162308 GACTTACTGATGGCCCGGAGGAGTTACAAATCAAGAAACCCCCAAAGGCATAGTTTCTAAAATCT
131 GACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCAAAGGCATAGTTTCTAAAATCT
162373 CATTTGAAAACATCCTGCACTGAAGGT
196 CATTTGAAAACATCCTGCACTGAAGGT
* *
162400 GTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATATCA
1 CTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCA
* *
162465 TTTGAAAGTATCATGCACTGAAGGTCTTATGGATGGCCCAAAGGTCTTACGCATCATGCTCGAAA
66 TTTGAAAGCATCCTGCACTGAAGGTCTTATGGATGGCCCAAAGGTCTTACGCATCATGCTCGAAA
* * *
162530 GACTTACTGATGGCCCGGAGGACTTACAAATGAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCT
131 GACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCAAAGGCATAGTTTCTAAAATCT
162595 CATTTGAAAACATCCTGCACTGAAGGT
196 CATTTGAAAACATCCTGCACTGAAGGT
* * *
162622 CTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTAGTTCCTTAAATCTCA
1 CTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCA
* * * * ** * *
162687 TTTGAAAACATCCTGCACTAAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCC
66 TTTGAAAGCATCCTGCACTGAAGGTCTTATGGATGGCCCAAAGGTCTTACGCATCATG-----CT
* ** **** * * ** * ** ** * ** * *
162752 CGAATG-CTTA-T--TTTCTAAAATGTCATTTGAAAAC-ATCATGCACTGAAGGTCTTATGGATG
126 CGAAAGACTTACTGATGGCCCGGAGGAC-TTACAAATCAAGAAACCCCCAAAGG-C--ATAG-TT
* **** ** * ** * * *
162812 GCCCGGA--GGACTT--ACGCATCAC-GCTC-GAAAGA
186 TCTAAAATCTCATTTGAAAACATC-CTGCACTGAAGGT
*
162844 CTTACT-GATGGCCC-AGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCT
1 CTTA-TGGATGGCCCGA-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCT
* * * * **
162907 CATTTGAAAACATCCTGGACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGA
64 CATTTGAAAGCATCCTGCACTGAAGGTCTTATGGATGGCCCAAAGGTCTTACGCATCATGCTCGA
* * * *
162972 AAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCTCGAAGGCTTAGTTTCGAAAAT
129 AAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCAAAGGCATAGTTTCTAAAAT
* *
163037 CTCATTTGAAAATATCATGCACTGAAGGT
194 CTCATTTGAAAACATCCTGCACTGAAGGT
*
163066 CTTATGGATGGACCGAAGGACTTAC
1 CTTATGGATGGCCCGAAGGACTTAC
163091 GCATCATGCT
Statistics
Matches: 556, Mismatches: 109, Indels: 52
0.78 0.15 0.07
Matches are distributed among these distances:
217 9 0.02
218 6 0.01
219 4 0.01
220 7 0.01
221 22 0.04
222 458 0.82
223 24 0.04
224 7 0.01
225 4 0.01
226 6 0.01
227 9 0.02
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (222 bp):
CTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCA
TTTGAAAGCATCCTGCACTGAAGGTCTTATGGATGGCCCAAAGGTCTTACGCATCATGCTCGAAA
GACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCAAAGGCATAGTTTCTAAAATCT
CATTTGAAAACATCCTGCACTGAAGGT
Found at i:162691 original size:90 final size:90
Alignment explanation
Indices: 162538--162826 Score: 479
Period size: 90 Copynumber: 3.2 Consensus size: 90
162528 AAGACTTACT
* *
162538 GATGGCCCGGAGGACTTACAAATGAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
162603 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * *
162628 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGATTAGTTCCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
162693 AACATCCTGCACTAAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * *
162718 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAATGCTTATTTTCTAAAATGTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
162783 AACATCATGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
162808 GATGGCCCGGAGGACTTAC
1 GATGGCCCGAAGGACTTAC
162827 GCATCACGCT
Statistics
Matches: 184, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
90 184 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:163493 original size:43 final size:42
Alignment explanation
Indices: 163445--163528 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 42
163435 CATTTGAAAA
* *
163445 CATCATGCACTGAAGGTCTTA-TGGATGGCCCGAAGGACTTACG
1 CATCATGCAC-GAAAGACTTACT-GATGGCCCGAAGGACTTACG
* *
163488 CATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTAC
1 CATCATGCACGAAAGACTTACTGATGGCCCGAAGGACTTAC
163529 AAATCAAGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
42 26 0.72
43 10 0.28
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (42 bp):
CATCATGCACGAAAGACTTACTGATGGCCCGAAGGACTTACG
Found at i:164189 original size:91 final size:90
Alignment explanation
Indices: 163906--164285 Score: 556
Period size: 90 Copynumber: 4.3 Consensus size: 90
163896 AAGACTTACT
* * *
163906 GATGGCCC--AGGACTTACAAATCAAGAAAACCCC-AAGGCTTAGTTTCTAAAATATCA-TTG-A
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
163966 AA-ATCCTGCACAGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * *
163990 GATGACCCGAAGAACTTACAAATCAAGAAACCCCCGAAGGCTTATTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
164055 AACATCCTGCACTGAAAGTTTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * * * *
164080 GATGGCTCGGAGGACTTACAAATAAAGAAACCCCCGAAGGCTTATTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* *
164145 AAACATCTTGCACGGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
164171 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
164236 AACATCCTGCACTGAGGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
164261 GATGGCCCGAAGGACTTACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
164286 TGCTCGAAAG
Statistics
Matches: 262, Mismatches: 27, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
84 7 0.03
86 23 0.09
87 20 0.08
88 3 0.01
89 3 0.01
90 125 0.48
91 81 0.31
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:164282 original size:181 final size:175
Alignment explanation
Indices: 163906--164814 Score: 716
Period size: 181 Copynumber: 5.1 Consensus size: 175
163896 AAGACTTACT
*
163906 GATGGCCC-AGGACTTACAAATCAAGAAAACCCCAAGGCTTAGTTTCTAAAATATCATTGAAAAT
1 GATGGCCCGAGGACTTACAAATAAAGAAAACCCCAAGGCTTAGTTTCTAAAATATCATTGAAAAT
*
163970 CCTGCACAGAAGGTCTTATGGATGACCCGAAGAACTTACAAATCAAGAAACCCCCGAAGGCTTAT
66 CCTGCACAGAAGGTCTTATGGATGACCCGAAGAACTTACAAATCAAGAAACCCCCGAAGGCTTAG
*
164035 TTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTTTTATG
131 TTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATG
* * * *
164080 GATGGCTCGGAGGACTTACAAATAAAGAAACCCCCGAAGGCTTATTTTCTTAAAATTTCATTTGA
1 GATGGC-CCGAGGACTTACAAATAAAGAAAACCCC-AAGGCTTAGTTTC-TAAAATATCA-TTG-
* * * *
164145 AAACATCTTGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
61 AAA-ATCCTGCACAGAAGGTCTTATGGATGACCCGAAGAACTTACAAATCAAGAAACCCCCGAAG
**
164210 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAGGGTCTTATG
125 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATG
** * * ** ** *
164261 GATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACCGATGGCCCGGAG-GACTTACAA-
1 GATGGCCCG-AGGACTTACAAAT-A---AAGAAA-AC---CCCAAGG--CTTAGTTTC-TAAAAT
* * ** ** * ** *
164324 ATCA-AG-AAA-CC--C-CTGAAGG-CTTA--G-T-TTCTTAA-ATC-T-CATTTGAA-AACATC
54 ATCATTGAAAATCCTGCACAGAAGGTCTTATGGATGACCCGAAGAACTTACAAATCAAGAA-A-C
** *** ** * ** * *
164374 CTCCACTGAAGGTCTTATGGATGGCCCGAA--GGAATT--ACGCATCATG--CTAGAAAGACTTA
117 C-CC-C-GAAGG-CTTA--G-TTTCTTAAATCTCATTTGAAAACATCCTGCACT-GAAAGTCTTA
164433 CT-
174 -TG
* *
164435 GATGGCCCAGAGGACTTACAAATCAAGAAAACCCTAAAGGCTTAGTTTCTAAAATATCATTTGAA
1 GATGGCCC-GAGGACTTACAAATAAAGAAAACCC-CAAGGCTTAGTTTCTAAAATATCA-TTG-A
* *
164500 AATATCCTGCACAGAAGGTCTTATAGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
62 AA-ATCCTGCACAGAAGGTCTTATGGATGACCCGAAGAACTTACAAATCAAGAAACCCCCGAAGG
*
164565 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTTTTATG
126 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATG
* * * *
164615 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTTATTTGA
1 GATGGCCCG-AGGACTTACAAATAAAGAAAACCCC-AAGGCTTAGTTTC-TAAAATATCA-TTG-
* ** * * **
164680 AAACATCATGCATTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCGTCGAAG
61 AAA-ATCCTGCACAGAAGGTCTTATGGATGACCCGAAGAACTTACAAATCAAGAAACCCCCGAAG
*
164745 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
125 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATG
*
164796 GATGGCCCAAAGGACTTAC
1 GATGGCCC-GAGGACTTAC
164815 GCATCATGCT
Statistics
Matches: 572, Mismatches: 101, Indels: 117
0.72 0.13 0.15
Matches are distributed among these distances:
165 7 0.01
166 7 0.01
167 3 0.01
168 1 0.00
169 2 0.00
170 8 0.01
171 7 0.01
172 5 0.01
173 5 0.01
174 39 0.07
175 26 0.05
176 33 0.06
177 18 0.03
178 19 0.03
179 28 0.05
180 62 0.11
181 264 0.46
182 5 0.01
183 7 0.01
184 4 0.01
185 4 0.01
186 2 0.00
188 6 0.01
189 8 0.01
190 2 0.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (175 bp):
GATGGCCCGAGGACTTACAAATAAAGAAAACCCCAAGGCTTAGTTTCTAAAATATCATTGAAAAT
CCTGCACAGAAGGTCTTATGGATGACCCGAAGAACTTACAAATCAAGAAACCCCCGAAGGCTTAG
TTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAAGTCTTATG
Found at i:164736 original size:91 final size:90
Alignment explanation
Indices: 164435--164814 Score: 573
Period size: 90 Copynumber: 4.2 Consensus size: 90
164425 AAGACTTACT
* ** * *
164435 GATGGCCC-AGAGGACTTACAAATCAAGAAAACCCTAAAGGCTTAGTTTCTAAAATATCATTTGA
1 GATGGCCCGA-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGA
* * *
164499 AAATATCCTGCACAGAAGGTCTTATA
65 AAACATCCTGCACTGAAGGTCTTATG
*
164525 GATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
164590 AACATCCTGCACTGAAAGTTTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
164615 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTTATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* *
164680 AAACATCATGCATTGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
**
164706 GATGGCCCGAAGGACTTACAAATCAAGAAACCGTCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
164771 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
164796 GATGGCCCAAAGGACTTAC
1 GATGGCCCGAAGGACTTAC
164815 GCATCATGCT
Statistics
Matches: 263, Mismatches: 25, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
90 180 0.68
91 83 0.32
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:165512 original size:90 final size:90
Alignment explanation
Indices: 165244--165797 Score: 887
Period size: 90 Copynumber: 6.2 Consensus size: 90
165234 GATGTTCCGG
* *
165244 AGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACGTCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
*
165308 ACTGAAGGTCTTATGGATGGCCTGA
66 ACTGAAGGTCTTATGGATGGCCCGA
* *
165333 AGGACCTACAAATCAAGAAA-CCCCGAAGTCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
*
165397 ACCGAAGGTCTTATGGATGGCCCGA
66 ACTGAAGGTCTTATGGATGGCCCGA
* * * * *
165422 AGGACTTACAAATCAAGAAACACCTGAAGGTTTAGTTTCTTAAATCTCATTTGAAAACGTCCTAC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
* *
165487 ACTGAATGTCTTATGGATGGTCCGA
66 ACTGAAGGTCTTATGGATGGCCCGA
* * *
165512 AGGACTAACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCTTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
* *
165577 ACTGAAGGTCTTAGGGATGGCTCGA
66 ACTGAAGGTCTTATGGATGGCCCGA
* *
165602 AGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTG
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTG
*
165667 CACTGAAGGTCTTATAGATGGCCCGA
65 CACTGAAGGTCTTATGGATGGCCCGA
*
165693 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATGCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
165758 ACTGAAGGTCTTATGGATGGCCCGA
66 ACTGAAGGTCTTATGGATGGCCCGA
165783 AGGACTTACAAATCA
1 AGGACTTACAAATCA
165798 TGCTCGAAAG
Statistics
Matches: 423, Mismatches: 40, Indels: 3
0.91 0.09 0.01
Matches are distributed among these distances:
89 102 0.24
90 237 0.56
91 84 0.20
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (90 bp):
AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
ACTGAAGGTCTTATGGATGGCCCGA
Found at i:165750 original size:271 final size:268
Alignment explanation
Indices: 165234--165797 Score: 896
Period size: 271 Copynumber: 2.1 Consensus size: 268
165224 AAGACTTACT
* * *
165234 GATGTTCCGGAGGACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
1 GATGGTCCGAAGGACTTACAAATCAAGAAACCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAAA
* * *
165299 ACGTCCTGCACTGAAGGTCTTATGGATGGCCTGAAGGACCTACAAATCAAGAAACCCCGAAGTCT
66 ACATCCTGCACTGAAGGTCTTAGGGATGGCCTGAAGGACCTACAAATCAAGAAACCCCGAAGGCT
*
165364 TAGTTTCTTAAATCTCATTTGAAAACATCCTGCACCGAAGGTCTTATGGATGGCCCGAAGGACTT
131 TAGTTTCTTAAATCTCATTTGAAAACATCCTGCACCGAAGGTCTTATAGATGGCCCGAAGGACTT
* * * *
165429 ACAAATCAAGAAACACCTGAAGGTTTAGTTTCTTAAATCTCATTTGAAAACGTCCTACACTGAAT
196 ACAAATCAAGAAACACCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTACACTGAAG
165494 GTCTTATG
261 GTCTTATG
* *
165502 GATGGTCCGAAGGACTAACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGTCCGAAGGACTTACAAATCAAGAAA-CCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
165567 AACATCTTGCACTGAAGGTCTTAGGGATGG-CTCGAAGGACTTACAAATCAAGAAACCCCTGAAG
65 AACATCCTGCACTGAAGGTCTTAGGGATGGCCT-GAAGGACCTACAAATCAAGAAACCCC-GAAG
* *
165631 GCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGG
128 GCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCACCGAAGGTCTTATAGATGGCCCGAAGG
* * *
165696 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATGCTGCACT
192 ACTTACAAATCAAGAAACACCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTACACT
165761 GAAGGTCTTATG
257 GAAGGTCTTATG
*
165773 GATGGCCCGAAGGACTTACAAATCA
1 GATGGTCCGAAGGACTTACAAATCA
165798 TGCTCGAAAG
Statistics
Matches: 270, Mismatches: 22, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
268 29 0.11
269 84 0.31
270 15 0.06
271 142 0.53
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (268 bp):
GATGGTCCGAAGGACTTACAAATCAAGAAACCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAAA
ACATCCTGCACTGAAGGTCTTAGGGATGGCCTGAAGGACCTACAAATCAAGAAACCCCGAAGGCT
TAGTTTCTTAAATCTCATTTGAAAACATCCTGCACCGAAGGTCTTATAGATGGCCCGAAGGACTT
ACAAATCAAGAAACACCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTACACTGAAG
GTCTTATG
Found at i:165752 original size:181 final size:180
Alignment explanation
Indices: 165244--165797 Score: 909
Period size: 181 Copynumber: 3.1 Consensus size: 180
165234 GATGTTCCGG
165244 AGGACTTACAAATCAAGAAACCCC-GAAGGCTTAGTTTC-TAAAATCTCATTTGAAAACGTCCTG
1 AGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACGTCCTG
* * *
165307 CACTGAAGGTCTTATGGATGGCCTGAAGGACCTACAAATCAAGAAA-CCCCGAAGTCTTAGTTTC
66 CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC
*
165371 TTAAATCTCATTTGAAAACATCCTGCACCGAAGGTCTTATGGATGGCCCGA
131 TTAAATCTCATTTGAAAACAT-CTGCACTGAAGGTCTTATGGATGGCCCGA
* * *
165422 AGGACTTACAAATCAAGAAACACCTGAAGGTTTAGTTTCTT-AAATCTCATTTGAAAACGTCCTA
1 AGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACGTCCTG
* * * *
165486 CACTGAATGTCTTATGGATGGTCCGAAGGACTAACAAATCAAGAAACCCCCAAAGGCTTAGTTTC
66 CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC
* *
165551 TTAAATCTCATTTGAAAACATCTTGCACTGAAGGTCTTAGGGATGGCTCGA
131 TTAAATCTCATTTGAAAACATC-TGCACTGAAGGTCTTATGGATGGCCCGA
* *
165602 AGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTG
1 AGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACGTCCTG
*
165667 CACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC
66 CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC
165732 TTAAATCTCATTTGAAAACATGCTGCACTGAAGGTCTTATGGATGGCCCGA
131 TTAAATCTCATTTGAAAACAT-CTGCACTGAAGGTCTTATGGATGGCCCGA
165783 AGGACTTACAAATCA
1 AGGACTTACAAATCA
165798 TGCTCGAAAG
Statistics
Matches: 345, Mismatches: 25, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
178 23 0.07
179 77 0.22
180 102 0.30
181 142 0.41
182 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (180 bp):
AGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACGTCCTG
CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC
TTAAATCTCATTTGAAAACATCTGCACTGAAGGTCTTATGGATGGCCCGA
Found at i:165920 original size:132 final size:132
Alignment explanation
Indices: 165683--166330 Score: 501
Period size: 132 Copynumber: 4.9 Consensus size: 132
165673 AGGTCTTATA
*
165683 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
165748 AACATGCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCACGAAAGACTTA
165813 CT
131 CT
* * *
165815 GATGGCCTGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTTATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* **
165880 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAAT--T--AAG-AA-AC-CC
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCACGAAAGACTTA
*
165938 CC
131 CT
* ** ** * * *
165940 GAAGG--CTTAGTTTCTTA-AAATTTCATTTGAAAACATCATGCACGGAAGGTCTTATGGATGGC
1 GATGGCCCGAAG-GACTTACAAA--TCA--AG-AAAC--C---C-CCGAAGG-CTTA--G-T--T
* * * ** * * ** *** ** *
166002 CCGAAGGA-CTTACAAATCAAGAA-A-CC--C-CCGAAGG-CTTA--G-TTTCTTAAATCTCATT
48 TCTAA-AATC-T-CATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAA--GGACT
* * *
166057 TGAAAACATCATGCACTGAAGGTCTTA-T
107 T-ACAA-ATCATGCAC-GAAAGACTTACT
* * *
166085 AGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTTAAATCTCATTTCA
1 -GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
* * *
166150 AAACATGCTGCACTGAAGGTCTTAGGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCACGAAAGACTT
166215 ACT
130 ACT
*
166218 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
166283 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAAT
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAAT
166331 TAAGAAACCC
Statistics
Matches: 389, Mismatches: 78, Indels: 98
0.69 0.14 0.17
Matches are distributed among these distances:
123 5 0.01
124 4 0.01
125 8 0.02
126 2 0.01
127 3 0.01
128 7 0.02
129 7 0.02
130 5 0.01
131 3 0.01
132 223 0.57
133 17 0.04
134 18 0.05
135 8 0.02
136 8 0.02
137 17 0.04
138 10 0.03
139 1 0.00
140 5 0.01
141 5 0.01
142 6 0.02
143 7 0.02
144 2 0.01
145 1 0.00
146 7 0.02
147 4 0.01
148 6 0.02
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (132 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCACGAAAGACTTA
CT
Found at i:165996 original size:223 final size:223
Alignment explanation
Indices: 165602--166020 Score: 745
Period size: 223 Copynumber: 1.9 Consensus size: 223
165592 GATGGCTCGA
*
165602 AGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTG
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTG
165667 CACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC
66 CACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC
*
165732 TTAAATCTCATTTGAAAACATGCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATC
131 TTAAATCTCATTTGAAAACATGCTGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATC
165797 ATGCTCGAAAGACTTACTGATGGCCTGG
196 ATGCTCGAAAGACTTACTGATGGCCTGG
165825 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATCTT-ATTTGAAAACATCCT
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAAT-TTCATTTGAAAACATCCT
* *
165888 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTT
65 GCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTT
*
165953 CTTAAAATTTCATTTGAAAACAT-CATGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAA
130 CTT-AAATCTCATTTGAAAACATGC-TGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAA
166017 ATCA
193 ATCA
166021 AGAAACCCCC
Statistics
Matches: 188, Mismatches: 5, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
222 88 0.47
223 100 0.53
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (223 bp):
AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTG
CACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC
TTAAATCTCATTTGAAAACATGCTGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATC
ATGCTCGAAAGACTTACTGATGGCCTGG
Found at i:166109 original size:90 final size:90
Alignment explanation
Indices: 165815--166200 Score: 639
Period size: 90 Copynumber: 4.3 Consensus size: 90
165805 AAGACTTACT
* * * *
165815 GATGGCCTGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTTATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
165880 AACATCCTGCACTGAAGGTCTTATG
66 AACATCATGCACTGAAGGTCTTATG
* *
165905 GATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
*
165970 AAACATCATGCACGGAAGGTCTTATG
65 AAACATCATGCACTGAAGGTCTTATG
165996 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
166061 AACATCATGCACTGAAGGTCTTATA
66 AACATCATGCACTGAAGGTCTTATG
* *
166086 GATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTTAAATCTCATTTCAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
166151 AACATGC-TGCACTGAAGGTCTTAGG
66 AACAT-CATGCACTGAAGGTCTTATG
166176 GATGGCCCGAAGGACTTACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
166201 TGCTCGAAAG
Statistics
Matches: 278, Mismatches: 16, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
90 192 0.69
91 86 0.31
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.25
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCATGCACTGAAGGTCTTATG
Found at i:166126 original size:181 final size:180
Alignment explanation
Indices: 165815--166200 Score: 639
Period size: 181 Copynumber: 2.1 Consensus size: 180
165805 AAGACTTACT
* * *
165815 GATGGCCTGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTTATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
165880 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGG
66 AACATCATGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGG
* * *
165945 CTTAGTTTCTTAAAATTTCATTTGAAAACAT-CATGCACGGAAGGTCTTATG
131 CTTAGTTTCTT-AAATCTCATTTCAAAACATGC-TGCACGGAAGGTCTTAGG
*
165996 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
166061 AACATCATGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGG
66 AACATCATGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGG
*
166126 CTTAGTTTCTTAAATCTCATTTCAAAACATGCTGCACTGAAGGTCTTAGG
131 CTTAGTTTCTTAAATCTCATTTCAAAACATGCTGCACGGAAGGTCTTAGG
166176 GATGGCCCGAAGGACTTACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
166201 TGCTCGAAAG
Statistics
Matches: 192, Mismatches: 12, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
180 58 0.30
181 134 0.70
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.25
Consensus pattern (180 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCATGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGG
CTTAGTTTCTTAAATCTCATTTCAAAACATGCTGCACGGAAGGTCTTAGG
Found at i:166159 original size:403 final size:402
Alignment explanation
Indices: 165412--166512 Score: 1891
Period size: 403 Copynumber: 2.7 Consensus size: 402
165402 AGGTCTTATG
* * * * *
165412 GATGGCCCGAAGGACTTACAAATCAAGAAACACCTGAAGGTTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * * * *
165477 AACGTCCTACACTGAATGTCTTATGGATGGTCCGAAGGACTAACAAATCAAGAAACCCCCAAAGG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGG
* * * * *
165542 CTTAGTTTCTT-AAATCTCATTTGAAAACATCTTGCACTGAAGGTCTTAGGGATGGCTCGAAGGA
131 CTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACGGAAGGTCTTATGGATGGCCCGAAGGA
* *
165606 CTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACT
196 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACAT-CTGCACT
*
165671 GAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAA
259 GAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTTAA
* *
165736 ATCTCATTTGAAAACATGCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGC
324 ATCTCATTTCAAAACATGCTGCACTGAAGGTCTTAGGGATGGCCCGAAGGACTTACAAATCATGC
165801 TCGAAAGACTTACT
389 TCGAAAGACTTACT
* *
165815 GATGGCCTGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTTATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
165880 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGG
165945 CTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACGGAAGGTCTTATGGATGGCCCGAAGGA
131 CTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACGGAAGGTCTTATGGATGGCCCGAAGGA
166010 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCATGCACTG
196 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATC-TGCACTG
166075 AAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTTAAA
260 AAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTTAAA
166140 TCTCATTTCAAAACATGCTGCACTGAAGGTCTTAGGGATGGCCCGAAGGACTTACAAATCATGCT
325 TCTCATTTCAAAACATGCTGCACTGAAGGTCTTAGGGATGGCCCGAAGGACTTACAAATCATGCT
166205 CGAAAGACTTACT
390 CGAAAGACTTACT
166218 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
166283 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATTAAGAAACCCCTGAAGG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGG
166348 CTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACGGAAGGTCTTATGGATGGCCCGAAGGA
131 CTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACGGAAGGTCTTATGGATGGCCCGAAGGA
* *
166413 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAATATGCTACACTG
196 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACAT-CTGCACTG
*
166478 AAGGTCTTATGGATGG-CCGAAGGACTTACAAATCA
260 AAGGTCTTATAGATGGCCCGAAGGACTTACAAATCA
166513 TGCTCGAAAG
Statistics
Matches: 664, Mismatches: 31, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
402 20 0.03
403 559 0.84
404 85 0.13
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (402 bp):
GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGG
CTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACGGAAGGTCTTATGGATGGCCCGAAGGA
CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCTGCACTGA
AGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTTAAAT
CTCATTTCAAAACATGCTGCACTGAAGGTCTTAGGGATGGCCCGAAGGACTTACAAATCATGCTC
GAAAGACTTACT
Found at i:166406 original size:91 final size:90
Alignment explanation
Indices: 166218--166512 Score: 479
Period size: 91 Copynumber: 3.3 Consensus size: 90
166208 AAGACTTACT
*
166218 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
166282 AAATATCCTGCACTGAAGGTCTTATG
66 AAATAT-CTGCACTGAAGGTCTTATG
* * *
166308 GATGGCCCGAAGGACTTACAAATTAAGAAACCCCTGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* *
166373 AAACATCATGCACGGAAGGTCTTATG
66 AAATATC-TGCACTGAAGGTCTTATG
166399 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
*
166463 AAATATGCTACACTGAAGGTCTTATG
66 AAATAT-CTGCACTGAAGGTCTTATG
166489 GATGG-CCGAAGGACTTACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
166513 TGCTCGAAAG
Statistics
Matches: 190, Mismatches: 12, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
89 19 0.10
90 85 0.45
91 86 0.45
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.26
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
AAATATCTGCACTGAAGGTCTTATG
Found at i:166479 original size:313 final size:312
Alignment explanation
Indices: 165591--166528 Score: 1195
Period size: 313 Copynumber: 3.0 Consensus size: 312
165581 AAGGTCTTAG
* *
165591 GGATGGCTCGAAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAAATTTCATTTG
1 GGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTG
*
165656 AAAACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAA
66 AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAA
165721 GGCTTAGTTTCTTAAATCTCATTTGAAAACATGC-TGCACTGAAGGTCTTATGGATGGCCCGAAG
131 GGCTTAGTTTCTTAAATCTCATTTGAAAACAT-CATGCACTGAAGGTCTTATGGATGGCCCGAAG
* * * ** * ** ** * * *
165785 GACTTACAAATCATG-----CTCGAAAGACTTACTGATGGCCTGGA--GGACTTACAAATCAAGA
195 GACTTACAAATCAAGAAACCCACG-AAGGCTTA--G-TTTCTTAAATCTCATTTA-AAAT-ATGC
* * * ** *** ** * * * * * *
165843 AACCCCCGAAGG-CTTA-G-TTTCTAAAATCTTATTTGAAAACATCCTGCACTGAAGGTCTTA-T
254 TA-CACTGAAGGTCTTAGGATGGCCCGAA--GGACTT-ACAA-ATCATGCTC-GAAAGACTTACT
*
165904 GGATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTG
1 GGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTG
* *
165969 AAAACATCATGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAA
66 AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAA
*
166034 GGCTTAGTTTCTTAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTATAGATGGCCCGAAGG
131 GGCTTAGTTTCTTAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGG
* *
166099 ACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTTAAATCTCATTTCAAAACATGCTGCACT
196 ACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTTAAATCTCATTT-AAAATATGCTACACT
166164 GAAGGTCTTAGGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACT
260 GAAGGTCTTA-GGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACT
* *
166218 -GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATCTCATTTG
1 GGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTG
* * *
166281 AAAATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATTAAGAAACCCCTGAA
66 AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAA
* *
166346 GGCTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACGGAAGGTCTTATGGATGGCCCGAAG
131 GGCTTAGTTTCTT-AAATCTCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAG
*
166411 GACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAATATGCTACAC
195 GACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTTAAATCTCATTT-AAAATATGCTACAC
166476 TGAAGGTCTTATGGATGG-CCGAAGGACTTACAAATCATGCTCGAAAGACTTAC
259 TGAAGGTCTTA-GGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTAC
166529 CCCCAAAAAA
Statistics
Matches: 556, Mismatches: 54, Indels: 31
0.87 0.08 0.05
Matches are distributed among these distances:
312 122 0.22
313 380 0.68
314 19 0.03
315 10 0.02
316 9 0.02
317 9 0.02
318 7 0.01
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (312 bp):
GGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTG
AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAA
GGCTTAGTTTCTTAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGG
ACTTACAAATCAAGAAACCCACGAAGGCTTAGTTTCTTAAATCTCATTTAAAATATGCTACACTG
AAGGTCTTAGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACT
Found at i:166608 original size:200 final size:203
Alignment explanation
Indices: 166335--166714 Score: 579
Period size: 200 Copynumber: 1.9 Consensus size: 203
166325 ACAAATTAAG
* * * *
166335 AAACCCCTGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACGGAAGGTCTTATGG
1 AAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTAAAAACATCATGCACGGAAGGTCTTATGA
*
166400 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAA
66 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTATCTTAAAATCTCATTTGAA
* * * *
166464 AATATGC-TACACTGAAGGTCTTATGGATG-GCCGAAGGACTTACAAATCATGCTCGAAAGACTT
131 AACAT-CATACACGGAAGGTCTTATGGATGACCCGAAGGACTAACAAATCATGCTCGAAAGACTT
166527 ACCCCCAAA
195 ACCCCCAAA
* * *
166536 AAACCCCCGAAGGCTTAGTTTC-TAAAATCTCATTTAAAAACATCCTGCGCTGAAGGTCTTATGA
1 AAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTAAAAACATCATGCACGGAAGGTCTTATGA
* *
166600 ATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGGCTTAGTATCTTAAAATTTCATTTGAA
66 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTATCTTAAAATCTCATTTGAA
* *
166665 AACATCATGCTCGGAAGGTCTTATGGATGACCCGAAGGACTAACAAATCA
131 AACATCATACACGGAAGGTCTTATGGATGACCCGAAGGACTAACAAATCA
166715 AGAAACCCCC
Statistics
Matches: 160, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
200 85 0.53
201 57 0.36
202 18 0.11
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (203 bp):
AAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTAAAAACATCATGCACGGAAGGTCTTATGA
ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTATCTTAAAATCTCATTTGAA
AACATCATACACGGAAGGTCTTATGGATGACCCGAAGGACTAACAAATCATGCTCGAAAGACTTA
CCCCCAAA
Found at i:166796 original size:90 final size:90
Alignment explanation
Indices: 166536--166798 Score: 364
Period size: 91 Copynumber: 2.9 Consensus size: 90
166526 TACCCCCAAA
* * * *
166536 AAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTAAAAACATCCTGCGCTGAAGGTCTTATGAA
1 AAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATCCTGCACCGAAGGTCTTATGGA
* *
166601 TGGCCCGAAGGACTTACAAATTAAG
66 TGGCCCGAAGGACTAACAAATCAAG
* * * * * *
166626 AAACCCCCGAAGGCTTAGTATCTTAAAATTTCATTTGAAAACATCATGCTCGGAAGGTCTTATGG
1 AAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTAAAAACATCCTGCACCGAAGGTCTTATGG
*
166691 ATGACCCGAAGGACTAACAAATCAAG
65 ATGGCCCGAAGGACTAACAAATCAAG
* *
166717 AAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATCCTACACCGAAGGTCTTATGGT
1 AAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATCCTGCACCGAAGGTCTTATGGA
**
166782 TGGCTTGAAGGACTAAC
66 TGGCCCGAAGGACTAAC
166799 GCATCATGCT
Statistics
Matches: 150, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
90 70 0.47
91 80 0.53
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (90 bp):
AAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATCCTGCACCGAAGGTCTTATGGA
TGGCCCGAAGGACTAACAAATCAAG
Found at i:166937 original size:132 final size:132
Alignment explanation
Indices: 166667--167357 Score: 1069
Period size: 132 Copynumber: 5.2 Consensus size: 132
166657 CATTTGAAAA
* * * * *
166667 CATCATGCTCGGAAGGTCTTA-TGGATGACCCGAAGGACTAACAAATCAAGAAACCCCCGAAGGC
1 CATCATGCTC-GAAAGACTTACT-GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGC
* * * * * **
166731 TTAGTTTCTTAAATCTCATTTAAAAACATCCTACACCGAAGGTCTTATGGTTGGCTTGAAGGACT
64 TTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACT
*
166796 AACG
129 TACG
* *
166800 CATCATGCTCGAAAGACTTAATGATGGCCCGGAGGACTTACAAATCAAGAAACCCTCGAAGGCTT
1 CATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTT
*
166865 AGTTTCTAAAATCTCATTTGAAAACATCCTGGACTGAAGGTCTTATGGATGGCCCGAAGGACTTA
66 AGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTA
*
166930 CA
131 CG
* *
166932 AATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCTCGAAGGCTT
1 CATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTT
* * *
166997 AGTTTCGAAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTTTGGATGGCCCGAAGGACTTA
66 AGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTA
167062 CG
131 CG
167064 CATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTT
1 CATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTT
* *
167129 AGTTTCTAAAATCTCATTTAAAAACATCCTGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTA
66 AGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTA
167194 CG
131 CG
* * ** * *
167196 CATTATGTTCGAAAGACTTACTGATGGCCTAGAGGACTTAAAAATCAAGAAATCCCCGAAGGCTT
1 CATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTT
*
167261 AGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTA
66 AGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTA
167326 CG
131 CG
*
167328 CATCATGCTCGAAAGACTTACTGATAGCCC
1 CATCATGCTCGAAAGACTTACTGATGGCCC
167358 AAGAAGGACT
Statistics
Matches: 514, Mismatches: 43, Indels: 3
0.92 0.08 0.01
Matches are distributed among these distances:
132 503 0.98
133 11 0.02
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (132 bp):
CATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTT
AGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTA
CG
Found at i:167408 original size:231 final size:232
Alignment explanation
Indices: 167137--167557 Score: 682
Period size: 231 Copynumber: 1.8 Consensus size: 232
167127 TTAGTTTCTA
* *
167137 AAATCTCATTTAAAAACATCCTGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATTAT
1 AAATCTCATTTAAAAACATCCTGCACGGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCAT
* * * * * *
167202 GTTCGAAAGACTTACTGATGGCCTAGAGGACTTAAAAATCAAGAAATCCCCGAAGGCTTAGTTTC
66 GCTCGAAAGACTTACTGATGACCCAGAGGACTTAAAAATCAAGAAAACCCCAAAAGCTTAGTTTC
* * * * *
167267 TAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATC
131 TAAAATATCATTTGAAAACATCCTGCACAGAAGGTCTTATGGATGACCCGAAGAACTTACGCATC
167332 ATGCTCGAAAGACTTACTGATAGCCCAAGAAGGACTT
196 ATGCTCGAAAGACTTACTGATAGCCCAAGAAGGACTT
*
167369 AAATCTCA-TTAAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCAT
1 AAATCTCATTTAAAAACATCCTGCACGGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCAT
*
167433 GCTCGAAAGACTTACTGATGACCCAGAGGACTTACAAATCAAGAAAACCCCAAAAGCTTAGTTTC
66 GCTCGAAAGACTTACTGATGACCCAGAGGACTTAAAAATCAAGAAAACCCCAAAAGCTTAGTTTC
* *
167498 TAAAATATCATTTGAAAATATCCTGCAGAGAAGGTCTTATGGATGACCCGAAGAACTTAC
131 TAAAATATCATTTGAAAACATCCTGCACAGAAGGTCTTATGGATGACCCGAAGAACTTAC
167558 AAATCAAGAA
Statistics
Matches: 172, Mismatches: 17, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
231 164 0.95
232 8 0.05
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.24
Consensus pattern (232 bp):
AAATCTCATTTAAAAACATCCTGCACGGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCAT
GCTCGAAAGACTTACTGATGACCCAGAGGACTTAAAAATCAAGAAAACCCCAAAAGCTTAGTTTC
TAAAATATCATTTGAAAACATCCTGCACAGAAGGTCTTATGGATGACCCGAAGAACTTACGCATC
ATGCTCGAAAGACTTACTGATAGCCCAAGAAGGACTT
Found at i:167472 original size:99 final size:100
Alignment explanation
Indices: 167269--167466 Score: 332
Period size: 99 Copynumber: 2.0 Consensus size: 100
167259 TTAGTTTCTA
* * *
167269 AAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCAT
1 AAATCTCATTTAAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCAT
167334 GCTCGAAAGACTTACTGATAGCCCAAGAAGGACTT
66 GCTCGAAAGACTTACTGATAGCCCAAGAAGGACTT
167369 AAATCTCA-TTAAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCAT
1 AAATCTCATTTAAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCAT
167433 GCTCGAAAGACTTACTGAT-GACCC-AG-AGGACTT
66 GCTCGAAAGACTTACTGATAG-CCCAAGAAGGACTT
167466 A
1 A
167467 CAAATCAAGA
Statistics
Matches: 94, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
97 8 0.09
98 3 0.03
99 75 0.80
100 8 0.09
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (100 bp):
AAATCTCATTTAAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCAT
GCTCGAAAGACTTACTGATAGCCCAAGAAGGACTT
Found at i:167602 original size:90 final size:90
Alignment explanation
Indices: 167459--168355 Score: 724
Period size: 90 Copynumber: 10.0 Consensus size: 90
167449 GATGACCCAG
* * * * *
167459 AGGACTTACAAATCAAGAAAACCCCAAAAGCTTAGTTTCTAAAATATCATTTGAAAATATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATATCATTTGAAAACATCCTGC
** *
167524 AGAGAAGGTCTTATGGATGACCCGA
66 ACTGAAGGTCTTATGGATGGCCCGA
* *
167549 AGAACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATATCATTTGAAAACATCCTGT
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATATCATTTGAAAACATCCTGC
* * * *
167614 ACTGAAAGTTTTATGGATGGCTCGG
66 ACTGAAGGTCTTATGGATGGCCCGA
* * *
167639 AGGACTTACAAAT-AGAGAAACCCCCGAAGGCTTATTTTCTTAAAATTTCATTTGAAAACATCTT
1 AGGACTTACAAATCA-AGAAACCCCCGAAGGCTTAGTTTCTT-AAATATCATTTGAAAACATCCT
* * *
167703 GCACGGAAGGTCTTATAGATGGTCCGA
64 GCACTGAAGGTCTTATGGATGGCCCGA
* *
167730 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAATATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATATCATTTGAAAACATCCTGC
*
167795 ACTGAAGGTCTTATGGATGGCTCGA
66 ACTGAAGGTCTTATGGATGGCCCGA
* ** * ** ** *
167820 AGGACTTACAAATCATGCTCGAAAGACTTACCGATGGCCCGGAG-GACTTACAA-ATCA--AG-A
1 AGGACTTACAAATCA----AG-AA-AC-CCCCGAAGG--CTTAGTTTCTTA-AATATCATTTGAA
** **
167880 AAC--CC--C-C-GAAGG-CTTA--G-T-TTCTTA
56 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGA
** * * ** ** **
167904 A--A-TCT-CATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGA--A-TT--
1 AGGACT-TACAAATCAAGAA-A-CC--C-CCGAAGG-CTTA--G-T-TTCTTAAATATCATTTGA
** * * * *
167959 ACGCATCATGC-CCGAAAGACTTACT-GATGGCCC-A
55 AAACATCCTGCACTGAAGGTCTTA-TGGATGGCCCGA
* * * *
167993 GAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAAAATATCCTG
1 -AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATATCATTTGAAAACATCCTG
* *
168058 CACGGAAGGTCTTATGGATGACCCGA
65 CACTGAAGGTCTTATGGATGGCCCGA
* *
168084 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTGGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATATCATTTGAAAACATCCTGC
* *
168149 ACTGAAAGTTTTATGGATGGCCCGA
66 ACTGAAGGTCTTATGGATGGCCCGA
* * *
168174 AGGACTTATAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCATG
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATATCATTTGAAAACATCCTG
168239 CACTGAAGGTCTTATGGATGGCCCGA
65 CACTGAAGGTCTTATGGATGGCCCGA
** *
168265 AGGACTTACAAATCAAGAAACCGTCGAAGGCTTAGTTTCTTAAATCTCATTTG-AAACAT-CTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATATCATTTGAAAACATCCTGC
168328 ACTGAAGGTCTTATGGATGGCCCGA
66 ACTGAAGGTCTTATGGATGGCCCGA
168353 AGG
1 AGG
168356 GCTCGCATCA
Statistics
Matches: 642, Mismatches: 115, Indels: 102
0.75 0.13 0.12
Matches are distributed among these distances:
75 3 0.00
76 1 0.00
77 2 0.00
78 5 0.01
79 1 0.00
80 3 0.00
81 6 0.01
82 7 0.01
84 8 0.01
85 6 0.01
86 7 0.01
87 2 0.00
88 40 0.06
89 27 0.04
90 321 0.50
91 161 0.25
92 4 0.01
93 9 0.01
94 3 0.00
95 5 0.01
96 3 0.00
97 6 0.01
98 7 0.01
99 5 0.01
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (90 bp):
AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATATCATTTGAAAACATCCTGC
ACTGAAGGTCTTATGGATGGCCCGA
Found at i:167811 original size:181 final size:180
Alignment explanation
Indices: 167458--167834 Score: 560
Period size: 181 Copynumber: 2.1 Consensus size: 180
167448 TGATGACCCA
*
167458 GAGGACTTACAAATCAAGAAAACCCCAAAAGCTTAGTTTCTAAAATATCATTTGAAAATATCCTG
1 GAGGACTTACAAATCAAGAAAACCCCAAAAGCTTAGTTTCTAAAATATCATTTGAAAACATCCTG
*
167523 CAGAGAAGGTCTTATGGATGACCCGAAGAACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC
66 CAGAGAAGGTCTTATAGATGACCCGAAGAACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC
* *
167588 TTAAATATCATTTGAAAACATCCTGTACTGAAAGTTTTATGGATGGCTCG
131 TTAAATATCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGGCTCG
* * * * * *
167638 GAGGACTTACAAAT-AGAGAAACCCCCGAAGGCTTATTTTCTTAAAATTTCATTTGAAAACATCT
1 GAGGACTTACAAATCA-AGAAAACCCCAAAAGCTTAGTTTC-TAAAATATCATTTGAAAACATCC
** *
167702 TGCACG-GAAGGTCTTATAGATGGTCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGT
64 TGCA-GAGAAGGTCTTATAGATGACCCGAAGAACTTACAAATCAAGAAACCCCCGAAGGCTTAGT
* * *
167766 TTCTTAAATCTCATTTGAAAATATCCTGCACTGAAGGTCTTATGGATGGCTCG
128 TTCTTAAATATCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGGCTCG
*
167819 AAGGACTTACAAATCA
1 GAGGACTTACAAATCA
167835 TGCTCGAAAG
Statistics
Matches: 176, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
179 1 0.01
180 34 0.19
181 139 0.79
182 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (180 bp):
GAGGACTTACAAATCAAGAAAACCCCAAAAGCTTAGTTTCTAAAATATCATTTGAAAACATCCTG
CAGAGAAGGTCTTATAGATGACCCGAAGAACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC
TTAAATATCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGGCTCG
Found at i:167967 original size:132 final size:132
Alignment explanation
Indices: 167720--168995 Score: 1247
Period size: 132 Copynumber: 9.8 Consensus size: 132
167710 AGGTCTTATA
* * *
167720 GATGGTCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * **
167785 AATATCCTGCACTGAAGGTCTTATGGATGGCTCGAAGGACTTACAAATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
*
167850 CC
131 CT
*
167852 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
167917 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCCCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
167982 CT
131 CT
* * * *
167984 GATGGCCCAGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * ** **
168049 AATATCCTGCACGGAAGGTCTTATGGATGACCCGAAGGACTTA--CA-AAT-CAAG-AA-AC-CC
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
*
168107 CC
131 CT
* ** ** * * ** **
168109 GAAGG--CTTAGTTTCTTA-AATCTCATTGGAAAACATCCTGCACTGAAAGTTTTATGGATGGCC
1 GATGGCCCGGAG-GACTTACAA-ATCA--AG-AAAC--CC--C-C-G-AAGGCTTA--G-T--TT
* * * * * * ** *** ** *
168171 CGAAGGA-CTTATAAATCAAGAA-A-CC--C-CCGAAGG-CTTA--G-TTTCTTAAAATTTCATT
49 CTAA-AATCTCAT--TTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGC-CCGAA--GGACT
** * * *
168226 TGAAAACATCATGCACTGAAGGTCTTA-T
107 T--ACGCATCATGCTC-GAAAGACTTACT
* ** *
168254 GGATGGCCCGAAGGACTTACAAATCAAGAAACCGTCGAAGGCTTAGTTTCTTAAATCTCATTTG-
1 -GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
*
168318 AAACAT-CTGCACTGAAGGTCTTATGGATGGCCCGAAGGGC-T-CGCATCAT-CTCGAAAGACTT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTT
*
168379 AAT
130 ACT
* * * *
168382 GA-GGCCCAGAGGACTTATAAATCAAGAAACCCCCGAAGGCTTGGTTTCTAAAATATCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
168446 AATATCCTGCACTAAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
168511 CT
131 CT
* *
168513 GATGGCCTGGAGGACTTACAAATCAAGAAACCCCCGAAAGCTT-GTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
168577 AACATCCTGCACTAAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
168642 CT
131 CT
* *
168644 GATGGCCTGGAGGACTTACAAATCAAGAAACCCCCGAAAGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
168709 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
168774 CT
131 CT
* *
168776 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGACTTTGTTTCTAAAATCTCATTTG-A
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
168840 AA-GT-CTGCACTGAAGGTCTTATGGAT-GACCGAA-GTCTTACGCATCATGCTCG-AAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
168900 CT
131 CT
*
168902 GAT-G-TC------CTTAC-AATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
168957 AACGT-CTGCACTAAAGGTCTTATGGATGGCCCGAAGGAC
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAC
168996 CTACAAATCA
Statistics
Matches: 956, Mismatches: 128, Indels: 132
0.79 0.11 0.11
Matches are distributed among these distances:
116 30 0.03
117 13 0.01
118 28 0.03
119 6 0.01
120 2 0.00
123 5 0.01
124 8 0.01
125 6 0.01
126 68 0.07
127 38 0.04
128 44 0.05
129 36 0.04
130 12 0.01
131 151 0.16
132 416 0.44
133 6 0.01
134 10 0.01
135 4 0.00
136 10 0.01
137 13 0.01
138 3 0.00
139 7 0.01
140 5 0.01
141 6 0.01
142 5 0.01
143 1 0.00
144 5 0.01
145 2 0.00
146 4 0.00
147 7 0.01
148 5 0.01
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.25
Consensus pattern (132 bp):
GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
CT
Found at i:168295 original size:181 final size:178
Alignment explanation
Indices: 167984--168355 Score: 584
Period size: 181 Copynumber: 2.1 Consensus size: 178
167974 AAGACTTACT
167984 GATGGCCC-AGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGA
1 GATGGCCCGA-AGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGA
* *
168048 AAATATCCTGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
65 AAACATCATGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
*
168113 GCTTAGTTTCTTAAATCTCATTGGAAAACATCCTGCACTGAAAGTTTTATG
130 GCTTAGTTTCTTAAATCTCATTGG-AAACAT-CTGCACTGAAAGTCTTATG
* * * *
168164 GATGGCCCGAAGGACTTATAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTC-TAAAATATCATTTGA
* * **
168229 AAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCGTCGAAG
65 AAACATCATGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
* *
168294 GCTTAGTTTCTTAAATCTCATTTGAAACATCTGCACTGAAGGTCTTATG
130 GCTTAGTTTCTTAAATCTCATTGGAAACATCTGCACTGAAAGTCTTATG
168343 GATGGCCCGAAGG
1 GATGGCCCGAAGG
168356 GCTCGCATCA
Statistics
Matches: 177, Mismatches: 13, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
179 30 0.17
180 50 0.28
181 97 0.55
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.26
Consensus pattern (178 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAA
AACATCATGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
CTTAGTTTCTTAAATCTCATTGGAAACATCTGCACTGAAAGTCTTATG
Found at i:169097 original size:89 final size:89
Alignment explanation
Indices: 168908--169445 Score: 767
Period size: 89 Copynumber: 6.1 Consensus size: 89
168898 TACTGATGTC
* * *
168908 CTTAC-AATCAAGAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACGT-CTGCACTAA
1 CTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGA
168971 AGGTCTTATGGATGGCCCGAAGGA
66 AGGTCTTATGGATGGCCCGAAGGA
* *
168995 CCTACAAATCAAGAAACCCCGAAGTCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGA
1 CTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGA
169060 AGGTCTTATGGATGGCCCGAAGGA
66 AGGTCTTATGGATGGCCCGAAGGA
* * ** *
169084 CTTACAAATCAAGAAACACCTGAAGGTTTAGTTTCTTAAATCTCATTTGAAAACGGCCTAC-CTG
1 CTTACAAATCAAGAAAC-CCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTG
*
169148 AAGG--TTATGGATGG-TCGAAGGA
65 AAGGTCTTATGGATGGCCCGAAGGA
* *
169170 CTAACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAA--TCATTTG-AAACATCTTGCACTG
1 CTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTG
* * *
169232 AAGGTCTTA-GGATGACTCAAAGGA
65 AAGGTCTTATGGATGGCCCGAAGGA
* *
169256 CTTACAAATCAAG-AACCCCTGAAGGCTTAGTTTCATAAAATTTCATTTGAAAACATCCTGCACT
1 CTTACAAATCAAGAAACCCC-GAAGGCTTAGTTTC-TTAAATCTCATTTGAAAACATCCTGCACT
*
169320 GAAGGTCTTATAGATGGCCCGAAGGA
64 GAAGGTCTTATGGATGGCCCGAAGGA
*
169346 CTTACAAATCAAGAAACCCCCGAAGGCTTAG-TTCTTAAATCTCATTTGAAAACATGCTGCACTG
1 CTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTG
169410 AAGGTCTTATGGATGGCCCGAAGGA
65 AAGGTCTTATGGATGGCCCGAAGGA
169435 CTTACAAATCA
1 CTTACAAATCA
169446 GCTCGAAGAC
Statistics
Matches: 402, Mismatches: 33, Indels: 30
0.86 0.07 0.06
Matches are distributed among these distances:
83 7 0.02
84 18 0.04
85 21 0.05
86 68 0.17
87 15 0.04
88 53 0.13
89 140 0.35
90 64 0.16
91 12 0.03
92 4 0.01
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (89 bp):
CTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGA
AGGTCTTATGGATGGCCCGAAGGA
Found at i:169413 original size:262 final size:264
Alignment explanation
Indices: 168913--169445 Score: 776
Period size: 262 Copynumber: 2.0 Consensus size: 264
168903 ATGTCCTTAC
*
168913 AATCAAGAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACGTCTGCACTAAAGGTCTT
1 AATCAAGAAACCCCGAAGGCTTAGTTTCTAAAA-CTCATTTGAAAACATCTGCACTAAAGGTCTT
* * * *
168978 ATGGATGGCCCGAAGGACCTACAAATCAAGAAACCCCGAAGTCTTAGTTTCTTAAATCTCATTTG
65 ATGGATGACCCAAAGGACCTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTG
* *
169043 AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACACCTGAA
130 AAAACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACACCCGAA
* *
169108 GGTTTAGTTTCTTAAATCTCATTTGAAAACGGCCTACCTGAAGG-TTATGGATGG-TCGAAGGAC
195 GGCTTAGTTTCTTAAATCTCATTTGAAAACGGCCTACCTGAAGGCTTATGGATGGCCCGAAGGAC
169171 TAACA
260 TAACA
* *
169176 AATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAA-TCATTTG-AAACATCTTGCACTGAAGGTCT
1 AATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAAACTCATTTGAAAACATC-TGCACTAAAGGTCT
* * *
169239 TA-GGATGACTCAAAGGACTTACAAATCAAG-AACCCCTGAAGGCTTAGTTTCATAAAATTTCAT
64 TATGGATGACCCAAAGGACCTACAAATCAAGAAACCCC-GAAGGCTTAGTTTC-TAAAATCTCAT
*
169302 TTGAAAACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCC
127 TTGAAAACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACACCC
* *
169367 GAAGGCTTAG-TTCTTAAATCTCATTTGAAAACATG-CTGCACTGAAGGTCTTATGGATGGCCCG
192 GAAGGCTTAGTTTCTTAAATCTCATTTGAAAAC-GGCCTAC-CTGAAGG-CTTATGGATGGCCCG
*
169430 AAGGACTTACA
254 AAGGACTAACA
169441 AATCA
1 AATCA
169446 GCTCGAAGAC
Statistics
Matches: 243, Mismatches: 18, Indels: 16
0.88 0.06 0.06
Matches are distributed among these distances:
260 6 0.02
261 68 0.28
262 110 0.45
263 10 0.04
264 32 0.13
265 17 0.07
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (264 bp):
AATCAAGAAACCCCGAAGGCTTAGTTTCTAAAACTCATTTGAAAACATCTGCACTAAAGGTCTTA
TGGATGACCCAAAGGACCTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
AAACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACACCCGAAG
GCTTAGTTTCTTAAATCTCATTTGAAAACGGCCTACCTGAAGGCTTATGGATGGCCCGAAGGACT
AACA
Found at i:169641 original size:213 final size:217
Alignment explanation
Indices: 169254--169658 Score: 657
Period size: 213 Copynumber: 1.9 Consensus size: 217
169244 TGACTCAAAG
*
169254 GACTTACAAATCAAGAACCCCTGAAGGCTTAGTTTCATAAAATTTCATTTGAAAACATCCTGCAC
1 GACTTACAAATCAAGAACCCCTGAAGGCTTAGTTTCATAAAATCTCATTTGAAAACATCCTGCAC
169319 TGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTCTTAA
66 TGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTCTTAA
*
169384 ATCTCATTTGAAAACATGCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAGCT
131 ATCTCATTTGAAAACATGCTGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAGCT
169449 CGAAGACTTACTGAGGCCCGGA
196 CGAAGACTTACTGAGGCCCGGA
169471 GACTTACAAAATCAAGAAACCCC-GAAGGCTTAGTTTC-TAAAATCT-A-TTG-AAACATCCTG-
1 GACTTAC-AAATCAAG-AACCCCTGAAGGCTTAGTTTCATAAAATCTCATTTGAAAACATCCTGC
* *
169530 ACTGAAGGTCTTATGGAT-GCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTTCT
64 ACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAG-TTCT
*
169594 TAAAATTTCATTTG-AAACAT-CATGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAAT
128 T-AAATCTCATTTGAAAACATGC-TGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAAT
169657 CA
191 CA
169659 AGAACCTCCG
Statistics
Matches: 178, Mismatches: 5, Indels: 14
0.90 0.03 0.07
Matches are distributed among these distances:
212 41 0.23
213 70 0.39
214 21 0.12
215 3 0.02
216 1 0.01
217 14 0.08
218 22 0.12
219 6 0.03
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (217 bp):
GACTTACAAATCAAGAACCCCTGAAGGCTTAGTTTCATAAAATCTCATTTGAAAACATCCTGCAC
TGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTCTTAA
ATCTCATTTGAAAACATGCTGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAGCT
CGAAGACTTACTGAGGCCCGGA
Found at i:169673 original size:89 final size:90
Alignment explanation
Indices: 169463--169828 Score: 535
Period size: 85 Copynumber: 4.2 Consensus size: 90
169453 GACTTACTGA
* *
169463 GGCCCGGA-GACTTACAAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTAAAATCT-A-TTG-AAA
1 GGCCCGAAGGACTTAC-AAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAA
169523 CATCCTG-ACTGAAGGTCTTATGGAT
65 CATCCTGCACTGAAGGTCTTATGGAT
* *
169548 -GCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTG-AAA
1 GGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAA
* *
169611 CATCATGCACGGAAGGTCTTATGGAT
65 CATCCTGCACTGAAGGTCTTATGGAT
*
169637 GGCCCGAAGGACTTACAAATCAAG-AACCTCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAAC
1 GGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAAC
*
169701 ATCCTGCACTGAAGG-CCTAT-GAT
66 ATCCTGCACTGAAGGTCTTATGGAT
169724 GGCCCGAAGGACTTAC-AATCAAG-AACCCCCGAA-GCTTAGTTTCTTAAATCTCATTTGAAAAC
1 GGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAAC
*
169786 ATGCTGCACTGAAGGTCTTATGGAT
66 ATCCTGCACTGAAGGTCTTATGGAT
169811 GGCCCGAAGGACTTACAA
1 GGCCCGAAGGACTTACAA
169829 TCATGCTCGA
Statistics
Matches: 255, Mismatches: 15, Indels: 19
0.88 0.05 0.07
Matches are distributed among these distances:
84 16 0.06
85 69 0.27
86 25 0.10
87 39 0.15
88 28 0.11
89 56 0.22
90 22 0.09
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (90 bp):
GGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAAC
ATCCTGCACTGAAGGTCTTATGGAT
Found at i:169763 original size:174 final size:174
Alignment explanation
Indices: 169463--169828 Score: 534
Period size: 174 Copynumber: 2.1 Consensus size: 174
169453 GACTTACTGA
*
169463 GGCCCGGA-GACTTACAAAATCAAGAAACCCCGAAGGCTTAGTTTCTAAAATCTATTGAAACATC
1 GGCCCGAAGGACTTAC-AAATCAAGAAACCCCGAAGGCTTAGTTTCTAAAATCTATTGAAACATC
* *
169527 CTGACTGAAGGTCTTATGGATGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTT
65 CTGACTGAAGGTCCTATGGATGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTT
*
169592 CTTAAAATTTCATTTG-AAACAT-CATGCACGGAAGGTCTTATGGAT
130 CTT-AAATCTCATTTGAAAACATGC-TGCACGGAAGGTCTTATGGAT
*
169637 GGCCCGAAGGACTTACAAATCAAG-AACCTCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAAC
1 GGCCCGAAGGACTTACAAATCAAGAAACC-CCGAAGGCTTAGTTTCTAAAATCT-A-TTG-AAAC
169701 ATCCTGCACTGAAGG-CCTAT-GATGGCCCGAAGGACTTAC-AATCAAG-AACCCCCGAA-GCTT
62 ATCCTG-ACTGAAGGTCCTATGGAT-GCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTT
*
169761 AGTTTCTTAAATCTCATTTGAAAACATGCTGCACTGAAGGTCTTATGGAT
125 AGTTTCTTAAATCTCATTTGAAAACATGCTGCACGGAAGGTCTTATGGAT
169811 GGCCCGAAGGACTTACAA
1 GGCCCGAAGGACTTACAA
169829 TCATGCTCGA
Statistics
Matches: 177, Mismatches: 6, Indels: 18
0.88 0.03 0.09
Matches are distributed among these distances:
173 15 0.08
174 94 0.53
175 19 0.11
176 12 0.07
177 29 0.16
178 8 0.05
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (174 bp):
GGCCCGAAGGACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTAAAATCTATTGAAACATCC
TGACTGAAGGTCCTATGGATGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC
TTAAATCTCATTTGAAAACATGCTGCACGGAAGGTCTTATGGAT
Found at i:169907 original size:130 final size:128
Alignment explanation
Indices: 169720--169958 Score: 399
Period size: 130 Copynumber: 1.9 Consensus size: 128
169710 TGAAGGCCTA
* *
169720 TGATGGCCCGAAGGACTTACAATCAAGAACCCCCGAAGCTTAGTTTCTTAAATCTCATTTG-AAA
1 TGATGGCCCGAAGGACTTACAATCAAGAAACCCCGAAGCTTAGTTTCTAAAATCTCA-TTGAAAA
*
169784 ACATGCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAATCATGCTCGAAAGACTTAC
65 ACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAATCATGCTCGAAAGACTTAC
*
169848 TGATGGCCCGGAGGACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTGAAA
1 TGATGGCCCGAAGGACTTAC-AATCAAGAAACCCCGAA-GCTTAGTTTCTAAAATCTCATTGAAA
*
169913 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAA
64 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAA
169959 ATTAAGAAAC
Statistics
Matches: 103, Mismatches: 5, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
128 19 0.18
129 19 0.18
130 65 0.63
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (128 bp):
TGATGGCCCGAAGGACTTACAATCAAGAAACCCCGAAGCTTAGTTTCTAAAATCTCATTGAAAAA
CATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAATCATGCTCGAAAGACTTAC
Found at i:170183 original size:211 final size:217
Alignment explanation
Indices: 169950--170354 Score: 610
Period size: 211 Copynumber: 1.9 Consensus size: 217
169940 TGGCCCGAAG
* *
169950 GACTTACAAATTAAGAAACCCCCGAAGGCTTAG-TTCTTAAAATTTCATTTGAAAACATCATGCA
1 GACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATCTCATTTGAAAACATCATGCA
170014 C-GAA-GAC-ATGGATGGCCCGAA-GACATACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-
65 CTGAAGGACTATGGATGGCCCGAAGGACATACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTA
* * * *
170074 AAA-TCATTTGAAAACATGC-TACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAT
130 AAATTCATTTGAAAACAT-CATACACGGAAGGACATATGGATGGCCCGAAGGACATACAAATCAT
170137 GCTCGAAAGACTTACTGAAGGCCC
194 GCTCGAAAGACTTACTGAAGGCCC
* *
170161 GACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAATATCCTGCAC
1 GACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGCAC
* * *
170226 TGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTTCTTA
66 TGAAGGAC-TATGGATGGCCCGAAGGACATACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTA
*
170291 AAATTTCATTTGAAAACATCATGCACGGAAGGACATATGGATGGCCCGAAGGACATACAAATCA
130 AAA-TTCATTTGAAAACATCATACACGGAAGGACATATGGATGGCCCGAAGGACATACAAATCA
170355 AGAAACCCCC
Statistics
Matches: 172, Mismatches: 12, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
211 57 0.33
212 6 0.03
213 2 0.01
215 14 0.08
216 37 0.22
217 3 0.02
218 1 0.01
219 52 0.30
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.24
Consensus pattern (217 bp):
GACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGCAC
TGAAGGACTATGGATGGCCCGAAGGACATACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAA
AATTCATTTGAAAACATCATACACGGAAGGACATATGGATGGCCCGAAGGACATACAAATCATGC
TCGAAAGACTTACTGAAGGCCC
Found at i:170335 original size:91 final size:90
Alignment explanation
Indices: 170161--170444 Score: 455
Period size: 90 Copynumber: 3.1 Consensus size: 90
170151 CTGAAGGCCC
*
170161 GACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATCTCATTTGAAAATATCCTGCA
1 GACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACAT-CTGCA
170225 CTGAAGGTCTTATGGATGGCCCGAAG
65 CTGAAGGTCTTATGGATGGCCCGAAG
* *
170251 GACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCA
1 GACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATC-TGCA
* * *
170316 CGGAAGGACATATGGATGGCCCGAAG
65 CTGAAGGTCTTATGGATGGCCCGAAG
* *
170342 GACATACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATGCTACA
1 GACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACAT-CTGCA
170406 CTGAAGGTCTTATGGATGGCCCGAAG
65 CTGAAGGTCTTATGGATGGCCCGAAG
170432 GACTTACAAATCA
1 GACTTACAAATCA
170445 TGCTCGAAGA
Statistics
Matches: 177, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
90 93 0.53
91 84 0.47
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (90 bp):
GACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCTGCAC
TGAAGGTCTTATGGATGGCCCGAAG
Found at i:170520 original size:127 final size:126
Alignment explanation
Indices: 170341--170569 Score: 363
Period size: 127 Copynumber: 1.8 Consensus size: 126
170331 ATGGCCCGAA
* *
170341 GGACATACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATGCTACA
1 GGACATACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTACA
*
170406 CTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAGACTTACGAAGGCC
66 CTGAAGGTCTTATGAATGGCCCGAAGGACTTACAAATCATGCTCGAAGACTTACGAAGGCC
*
170467 GGACTTACAAATCAAGAAA-CCCCGAAGGC-TAGTTTTTACTAAAATCTCATTTGAAAACATCCT
1 GGACATACAAATCAAGAAACCCCCGAAGGCTTAG--TTT-CTAAAATCTCATTTGAAAACATCCT
* *
170530 GCACTGAAGGTTTTATGAATGGCCCGAAGGACTTACAAAT
63 ACACTGAAGGTCTTATGAATGGCCCGAAGGACTTACAAAT
170570 TAAGAAACCC
Statistics
Matches: 94, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
124 3 0.03
125 10 0.11
126 21 0.22
127 60 0.64
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (126 bp):
GGACATACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTACA
CTGAAGGTCTTATGAATGGCCCGAAGGACTTACAAATCATGCTCGAAGACTTACGAAGGCC
Found at i:170554 original size:217 final size:215
Alignment explanation
Indices: 170250--170660 Score: 605
Period size: 217 Copynumber: 1.9 Consensus size: 215
170240 ATGGCCCGAA
* *
170250 GGACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCATGC
1 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCATGC
* *
170315 ACGGAAGGACATATGGATGGCCCGAAGGACATACAAATCAAGAAACCCCCGAAGGCTTAGTTTCT
66 ACGGAAGGACATATGAATGGCCCGAAGGACATACAAATCAAGAAACCCCCGAAGGCTTAGTATCT
*
170380 T-AAATCTCATTTGAAAA-CATGCTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAAT
131 TAAAATCTCATTTGAAAACCATGCT---CGGAAGGTCTTAT-GATGGCCCGAAGGACTTACAAAT
170443 CATGCTCGAAGACTTACGAAGGCC
192 CATGCTCGAAGACTTACGAAGGCC
* *
170467 GGACTTACAAATCAAGAAA-CCCCGAAGGC-TAGTTTTTACTAAAATCTCATTTGAAAACATCCT
1 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCT--TAAAATCTCATTTGAAAACATCAT
* *** * *
170530 GCACTGAAGGTTTTATGAATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGGCTTAGTAT
64 GCACGGAAGGACATATGAATGGCCCGAAGGACATACAAATCAAGAAACCCCCGAAGGCTTAGTAT
*
170595 CTTAAAATTTCATTTGAAAACTCATGCTCGGAAGGTCTTATGATGGCCCGAAGGACTTACAAATC
129 CTTAAAATCTCATTTGAAAAC-CATGCTCGGAAGGTCTTATGATGGCCCGAAGGACTTACAAATC
170660 A
193 A
170661 ATAAACCCCC
Statistics
Matches: 175, Mismatches: 14, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
215 7 0.04
216 35 0.20
217 112 0.64
218 15 0.09
220 6 0.03
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (215 bp):
GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCATGC
ACGGAAGGACATATGAATGGCCCGAAGGACATACAAATCAAGAAACCCCCGAAGGCTTAGTATCT
TAAAATCTCATTTGAAAACCATGCTCGGAAGGTCTTATGATGGCCCGAAGGACTTACAAATCATG
CTCGAAGACTTACGAAGGCC
Found at i:170668 original size:89 final size:91
Alignment explanation
Indices: 170467--170723 Score: 339
Period size: 91 Copynumber: 2.9 Consensus size: 91
170457 TACGAAGGCC
* *
170467 GGACTTACAAATCAAGAAA-CCCCGAAGGC-TAGTTTTTACTAAAATCTCATTTGAAAACATCCT
1 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCT--TAAAATCTCATTTGAAAACATCAT
* *
170530 GCACTGAAGGTTTTATGAATGGCCCGAA
64 GCACGGAAGGTCTTATGAATGGCCCGAA
* * *
170558 GGACTTACAAATTAAGAAACCCCCGAAGGCTTAGTATCTTAAAATTTCATTTGAAAAC-TCATGC
1 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCATGC
*
170622 TCGGAAGGTCTTATG-ATGGCCCGAA
66 ACGGAAGGTCTTATGAATGGCCCGAA
* * *
170647 GGACTTACAAATCAATAAACCCCCGAA-GCTTAGTTTCTT-AAATCTCATTT-AAAACATCCTAC
1 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCATGC
*
170709 ACTGAAGGTCTTATG
66 ACGGAAGGTCTTATG
170724 GTTGGCTTGA
Statistics
Matches: 147, Mismatches: 16, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
86 5 0.03
87 27 0.18
88 11 0.07
89 35 0.24
90 17 0.12
91 36 0.24
92 10 0.07
93 6 0.04
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (91 bp):
GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGAAAACATCATGC
ACGGAAGGTCTTATGAATGGCCCGAA
Found at i:170873 original size:128 final size:131
Alignment explanation
Indices: 170616--171256 Score: 871
Period size: 128 Copynumber: 5.0 Consensus size: 131
170606 ATTTGAAAAC
* * * *
170616 TCATGCTCGGAAGGTCTTA-TGATGGCCCGAAGGACTTACAAATCAATAAACCCCCGAA-GCTTA
1 TCATGCTC-GAAAGACTTACTGATGG-CCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTA
* * * ** * *
170679 GTTTCTTAAATCTCATTT-AAAACATCCTACACTGAAGGTCTTATGGTTGGCTTGAAGAACTAAC
64 GTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
170743 GCA
129 GCA
* * *
170746 TCATGCTTGAAA-A-TTAATGATGGCC-GAGGACTTACAAATCAAGAAACCCTCGAAGGCTTAGT
1 TCATGCTCGAAAGACTTACTGATGGCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGT
* *
170808 TTCTAAAATCTCATTTGAAAACATCATGCTCTGAAGGTCTTATGGATGGCCCGAAGGACTTACGC
66 TTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGC
170873 A
131 A
* * *
170874 TCATGTTCGAAAGACTTACTAATGCCCGGAGGACTTACAAATCAAG-AACCCCCGAAGGCTTAG-
1 TCATGCTCGAAAGACTTACTGATGGCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGT
*
170937 TT-TAAAATCTCATTT-AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGTCTTACGC
66 TTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGC
171000 A
131 A
* * * *
171001 TCATGCTCGAAATATTTACTGATGGCCAGAAGGACTTACAAATCAAGAAACCCCCGAATGCTTAG
1 TCATGCTCGAAAGACTTACTGATGGCC-GGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAG
*
171066 TTTCTAAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACG
65 TTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACG
171131 CA
130 CA
*
171133 TCATGCTCGAAAGACTTACTGATGGCCCGGAGTACTTAC-AATCAAG-AACCCCCGAAGGCTTAG
1 TCATGCTCGAAAGACTTACTGATGG-CCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAG
* * * *
171196 TTTCT-AAATCTTATTGGAAAACATCCTGCAC-GAAAGTCTTATGGATGACCC-AAGGACTTAC
65 TTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
171257 AATCAAGAAA
Statistics
Matches: 456, Mismatches: 43, Indels: 27
0.87 0.08 0.05
Matches are distributed among these distances:
126 26 0.06
127 105 0.23
128 106 0.23
129 45 0.10
130 55 0.12
131 38 0.08
132 79 0.17
133 2 0.00
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.26
Consensus pattern (131 bp):
TCATGCTCGAAAGACTTACTGATGGCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGT
TTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGC
A
Found at i:171103 original size:259 final size:261
Alignment explanation
Indices: 170637--171929 Score: 1118
Period size: 259 Copynumber: 4.9 Consensus size: 261
170627 AGGTCTTATG
* * *
170637 ATGGCCCGAAGGACTTACAAATCAATAAACCCCCGAA-GCTTAGTTTCTTAAATCTCATTTAAAA
1 ATGGCCCGGAGGACTTACAAATCAA-GAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTAAAA
* * ** * * *
170701 CATCCTACACTGAAGGTCTTATGGTTGGCTTGAAGAACTAACGCATCATGCTTGAAA-A-TTAAT
65 CATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTAAT
*
170764 GATGGCC-GAGGACTTACAAATCAAGAAACCCTCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
130 GATGGCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
* *
170828 ACATCATGCTCTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGTTCGAAAGACTTAC
195 ACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTAC
170893 TA
260 TA
170895 AT-GCCCGGAGGACTTACAAATCAAGAACCCCCGAAGGCTTAG-TT-TAAAATCTCATTTAAAAC
1 ATGGCCCGGAGGACTTACAAATCAAGAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTAAAAC
* * * *
170957 ATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAATATTTACTG
66 ATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTAATG
*
171022 ATGGCCAGAAGGACTTACAAATCAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATTTGAAA
131 ATGGCCAG-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
171087 ACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTAC
195 ACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTAC
*
171152 TG
260 TA
* * *
171154 ATGGCCCGGAGTACTTAC-AATCAAGAACCCCCGAAGGCTTAGTTTCT-AAATCTTATTGGAAAA
1 ATGGCCCGGAGGACTTACAAATCAAGAACCCCCGAAGGCTTAGTTTCTAAAATCTCATT-TAAAA
* * * * * *
171217 CATCCTGCAC-GAAAGTCTTATGGATGACCC-AAGGACTTAC-AATCAAGAAACCCCGAGGCTTA
65 CATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATG----CTCGA----AA
* * ** ** * * * * * * *
171279 GTTCTTAA-AAT-TTCATTTGAACTCCTGCACGGAAGCTCTTATGGAA-GCTCGAAGGACTTACA
122 G-ACTTAATGATGGCCA-GAGGACT--T--AC--AA-ATC--AAGAAACCCCCGAAGG-CTTA-G
** * * * * *
171341 AATCAAGAAACCCCGAAGCTTAGTTTCTAAAATCTCTTTTCAAAAAT-CATGCCTGAAGGTCTTA
174 TTTC---TAA-----AATCTCA-TTT-GAAAA---C--ATC----ATGCA---CTGAAGGTCTTA
* *
171405 TGGATGGCCCAAAGGACTTACGCATCATGTTC-AAAGACTTACTGA
217 TGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACT-A
** *
171450 A-GGCCTAGA-GACTTACAAATC-AGAAATCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
1 ATGGCCCGGAGGACTTACAAATCAAG-AACCCCCGAAGGCTTAGTTTCTAAAATCTCATTT-AAA
171512 ACATCCTGCACTGAAGGTC-T-TGGATGG-CC--AGGACTTACGCATCATGCTCGAAAGACTTAA
64 ACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTAA
* * * *
171572 TGATAGCCCGAGGACTTACAAATCAAAAAACCCCCGAA--TTTAGTTTCT-AAATCTCA-TTGAA
129 TGATGGCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
171633 AA-ATCA-GCACTGAAGGTCTTAAGGAT-ACCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
194 AACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
*
171695 CTG
259 CTA
** *
171698 ATGGCCC-GA-GACTTACAAATCAAGAAACCCCCTTA--CTTTGTTTCTAAAATCTCATTTGAAA
1 ATGGCCCGGAGGACTTACAAATCAAG-AACCCCCGAAGGCTTAGTTTCTAAAATCTCATTT-AAA
* ** * * ** ** *
171759 GCATATTGCACTGAAGGTCTTATGGATGACCCGAAGGTCTTACGC-TTTTTTTCGAAAGACTTAC
64 ACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTAA
* * * *
171823 TGATGTCCCGGAGGACTTAC-AATCAAGAAAACCCCG-AGGCTTAATTTCTAAAATCTCATTTG-
129 TGATG-GCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
* * *
171885 AAACGTCCTGCACTGAAGGTCTTATGGATGGCCAGAAGGACTTAC
193 AAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
171930 AATTAAGAAA
Statistics
Matches: 835, Mismatches: 121, Indels: 160
0.75 0.11 0.14
Matches are distributed among these distances:
247 41 0.05
248 39 0.05
249 47 0.06
250 3 0.00
251 32 0.04
252 33 0.04
253 11 0.01
254 5 0.01
255 84 0.10
256 28 0.03
257 38 0.05
258 8 0.01
259 153 0.18
260 43 0.05
261 15 0.02
262 8 0.01
263 2 0.00
265 11 0.01
266 3 0.00
267 4 0.00
269 2 0.00
270 1 0.00
271 2 0.00
272 2 0.00
273 6 0.01
274 10 0.01
275 5 0.01
277 3 0.00
278 7 0.01
279 2 0.00
280 2 0.00
282 2 0.00
283 5 0.01
284 4 0.00
285 9 0.01
286 8 0.01
287 1 0.00
288 1 0.00
290 6 0.01
293 11 0.01
294 17 0.02
295 48 0.06
296 67 0.08
297 6 0.01
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.26
Consensus pattern (261 bp):
ATGGCCCGGAGGACTTACAAATCAAGAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTAAAAC
ATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTAATG
ATGGCCAGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAA
CATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACT
A
Found at i:171351 original size:84 final size:84
Alignment explanation
Indices: 171166--171375 Score: 261
Period size: 84 Copynumber: 2.5 Consensus size: 84
171156 GGCCCGGAGT
*
171166 ACTTACAATCAAGAACCCCCGAAGGCTTAGTTTCT-AAATCTTATTGGAAAACATCCTGCACGAA
1 ACTTACAATCAAGAAACCCCG-AGGCTTAGTTTCTAAAATCTTATTGG-AAACATCCTGCACGAA
*
171230 AGTCTTATGGATGACCCAAGG
64 AGTCTTATGGAAGACCCAAGG
* *
171251 ACTTACAATCAAGAAACCCCGAGGCTTAG-TTCTTAAAAT-TTCATTTG-AAC-TCCTGCACGGA
1 ACTTACAATCAAGAAACCCCGAGGCTTAGTTTC-TAAAATCTT-ATTGGAAACATCCTGCACGAA
*
171312 AGCTCTTATGGAAG-CTCGAAGG
64 AG-TCTTATGGAAGAC-CCAAGG
*
171334 ACTTACAAATCAAGAAACCCCGAAGCTTAGTTTCTAAAATCT
1 ACTTAC-AATCAAGAAACCCCGAGGCTTAGTTTCTAAAATCT
171376 CTTTTCAAAA
Statistics
Matches: 111, Mismatches: 6, Indels: 16
0.83 0.05 0.12
Matches are distributed among these distances:
82 13 0.12
83 27 0.24
84 39 0.35
85 32 0.29
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (84 bp):
ACTTACAATCAAGAAACCCCGAGGCTTAGTTTCTAAAATCTTATTGGAAACATCCTGCACGAAAG
TCTTATGGAAGACCCAAGG
Found at i:171903 original size:128 final size:128
Alignment explanation
Indices: 171331--171929 Score: 678
Period size: 124 Copynumber: 4.8 Consensus size: 128
171321 GGAAGCTCGA
* * * *
171331 AGGACTTACAAATCAAG-AAACCCCGAAGCTTAGTTTCTAAAATCTCTTTTCAAAAATCATGC-C
1 AGGACTTACAAATCAAGAAAACCCCG-AGCTTAGTTTCTAAAATCTCATTTGAAACATCCTGCAC
* * * * *
171394 TGAAGGTCTTATGGATGGCCCAAAGGACTTACGCATCATGTTC-AAAGACTTACTGAAGG-CCT
65 TGAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCG
*
171456 AGAGACTTACAAATC-AGAAATCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTG
1 AG-GACTTACAAATCAAGAAAACCCCG-A-GCTTAGTTTCTAAAATCTCATTTG-AAACATCCTG
* * *
171520 CACTGAAGGTC-T-TGGATG-GCC--AGGACTTACGCATCATGCTCGAAAGACTTAATGATAGCC
62 CACTGAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCC
171580 CG
127 CG
** * *
171582 AGGACTTACAAATCAA-AAAACCCCCGAATTTAGTTTCT-AAATCTCA-TTGAAAAAT-CAGCAC
1 AGGACTTACAAATCAAGAAAA-CCCCGAGCTTAGTTTCTAAAATCTCATTTGAAACATCCTGCAC
*
171643 TGAAGGTCTTAAGGAT-ACCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCG
65 TGAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCG
* * * **
171706 A-GACTTACAAATCAAGAAACCCCCTTA-CTTTGTTTCTAAAATCTCATTTGAAAGCATATTGCA
1 AGGACTTACAAATCAAGAAAACCCC-GAGCTTAGTTTCTAAAATCTCATTTGAAA-CATCCTGCA
* ** ** *
171769 CTGAAGGTCTTATGGATGACCCGAAGGTCTTACGC-TTTTTTTCGAAAGACTTACTGATGTCCCG
64 CTGAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC-
171833 G
128 G
* *
171834 AGGACTTAC-AATCAAGAAAACCCCGAGGCTTAATTTCTAAAATCTCATTTGAAACGTCCTGCAC
1 AGGACTTACAAATCAAGAAAACCCCGA-GCTTAGTTTCTAAAATCTCATTTGAAACATCCTGCAC
* *
171898 TGAAGGTCTTATGGATGGCCAGAAGGACTTAC
65 TGAAGGTCTTATGGATGACCCGAAGGACTTAC
171930 AATTAAGAAA
Statistics
Matches: 405, Mismatches: 44, Indels: 47
0.82 0.09 0.09
Matches are distributed among these distances:
120 13 0.03
121 6 0.01
122 9 0.02
123 34 0.08
124 80 0.20
125 39 0.10
126 35 0.09
127 71 0.18
128 78 0.19
129 40 0.10
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (128 bp):
AGGACTTACAAATCAAGAAAACCCCGAGCTTAGTTTCTAAAATCTCATTTGAAACATCCTGCACT
GAAGGTCTTATGGATGACCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCCG
Found at i:172173 original size:173 final size:174
Alignment explanation
Indices: 171824--172368 Score: 715
Period size: 173 Copynumber: 3.1 Consensus size: 174
171814 AAGACTTACT
* * * * *
171824 GATGTCCCGGAGGACTTA-CAATCAAGAAA-ACCCCG-AGGCTTAATTTCTAAAATCTCATTTG-
1 GATGGCCCGAAGGACTTATAAATCAAGAAACA-CCCGAAGGCTTAGTTTCTTAAATCTCATTTGA
* * * *
171885 AAACGTCCTGCACTGAAGGTCTTATGGATGGCCAGAAGGACTTACAATTAAGAAACCCGAA-GCT
65 AAACATTCTGCACTGAAGGTCTTATGGATGGCC-GAAGGACTTACAATCAAGAACCCCGAAGGCT
*
171949 TAGTTTCTTAAATC-TCATTG-AAACATCTTGCACTGCAA-GTCTTATG
129 TAGTTTCTTAAATCAT--TTGAAAACATCCTGCACTG-AAGGTCTTATG
* *
171995 GATGGCCCGAA-GACTTATAAATCAAGAAACACACGAAGGCTTAGTTTCTTAAATCTCAATTGAA
1 GATGGCCCGAAGGACTTATAAATCAAGAAACACCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
172059 AACATTCTACACTGAAGGTCTTATGGATGGTCCGAAGGACTT-CAAATCAAGAACCCCGAAGGCT
66 AACATTCTGCACTGAAGGTCTTATGGATGG-CCGAAGGACTTAC-AATCAAGAACCCCGAAGGCT
172123 TAGTTTCTTAAATCATTTGAAAACATCCTGCACTGAAGGTCTTA-G
129 TAGTTTCTTAAATCATTTGAAAACATCCTGCACTGAAGGTCTTATG
*
172168 GATGG-CCGAAGGACTT-TCAAATCAAGAAAC-CCCTGAAGGCTTAGTTTCTTAAAATTTCATTT
1 GATGGCCCGAAGGACTTAT-AAATCAAGAAACACCC-GAAGGCTTAGTTTCTT-AAATCTCATTT
*
172230 GAAAACA-TCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAATCAAGAACCCCGAAGG
63 GAAAACATTCTGCACTGAAGGTCTTATGGATGG-CCGAAGGACTTACAATCAAGAACCCCGAAGG
*
172294 CTTAGTTTCTTAAATCTCATTTGAAAACATGCTGCACTGAAGGTCTTATG
127 CTTAGTTTCTTAAA--TCATTTGAAAACATCCTGCACTGAAGGTCTTATG
*
172344 GATGGCCCGAAGGACTTACAAATCA
1 GATGGCCCGAAGGACTTATAAATCA
172369 GCTCGAAAGA
Statistics
Matches: 333, Mismatches: 21, Indels: 34
0.86 0.05 0.09
Matches are distributed among these distances:
170 6 0.02
171 22 0.07
172 33 0.10
173 161 0.48
174 56 0.17
175 32 0.10
176 6 0.02
177 17 0.05
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (174 bp):
GATGGCCCGAAGGACTTATAAATCAAGAAACACCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATTCTGCACTGAAGGTCTTATGGATGGCCGAAGGACTTACAATCAAGAACCCCGAAGGCTTA
GTTTCTTAAATCATTTGAAAACATCCTGCACTGAAGGTCTTATG
Found at i:172295 original size:260 final size:258
Alignment explanation
Indices: 171824--172368 Score: 750
Period size: 260 Copynumber: 2.1 Consensus size: 258
171814 AAGACTTACT
* *
171824 GATGTCCCGGAGGACTT-ACAATCAAGAAAACCCCGAGGCTTAATTTCTAAAATCTCATTTGAAA
1 GATGGCCCGAAGGACTTCA-AATCAAG-AAACCCCGAGGCTTAATTTCTAAAA-CTCATTTGAAA
* *
171888 CGTCCTGCACTGAAGGTCTTATGGATGGCCAGAAGGACTTACAATTAAGAAACCCGAAGCTTAGT
63 CATCCTGCACTGAAGGTCTTATGGATGGCCAGAAGGACTTACAATCAAGAAACCCGAAGCTTAGT
*
171953 TTCTTAAATCTCATTGAAACATCTTGCACTGCAAGTCTTATGGATGGCCCGAAGACTTATAAATC
128 TTCTTAAATCTCATTGAAACATCTTGCACTGCAAGTCTTATAGATGGCCCGAAGACTTATAAATC
*
172018 AAGAAACACACGAAGGCTTAGTTTCTTAAATCTCAATTGAAAACATTCTACACTGAAGGTCTTAT
193 AAGAAACACACGAAGGCTTAGTTTCTTAAATCTCAATTGAAAACATGCTACACTGAAGGTCTTAT
172083 G
258 G
* * *
172084 GATGGTCCGAAGGACTTCAAATCAAG-AACCCCGAAGGCTTAGTTTCTTAAA-TCATTTGAAAAC
1 GATGGCCCGAAGGACTTCAAATCAAGAAACCCCG-AGGCTTAATTTCTAAAACTCATTTG-AAAC
*
172147 ATCCTGCACTGAAGGTCTTA-GGATGGCC-GAAGGACTTTCAAATCAAGAAACCCCTGAAGGCTT
64 ATCCTGCACTGAAGGTCTTATGGATGGCCAGAAGGACTTAC-AATCAAGAAA-CCC-GAA-GCTT
*
172210 AGTTTCTTAAAATTTCATTTGAAAACATC-TGCACTG-AAGGTCTTATAGATGGCCCGAAGGACT
125 AGTTTCTT-AAATCTCA-TTG-AAACATCTTGCACTGCAA-GTCTTATAGATGGCCCGAA-GACT
* * * *
172273 TA-CAATCAAG-AAC-CCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATGCTGCACTGAA
185 TATAAATCAAGAAACACACGAAGGCTTAGTTTCTTAAATCTCAATTGAAAACATGCTACACTGAA
172335 GGTCTTATG
250 GGTCTTATG
172344 GATGGCCCGAAGGACTTACAAATCA
1 GATGGCCCGAAGGACTT-CAAATCA
172369 GCTCGAAAGA
Statistics
Matches: 256, Mismatches: 16, Indels: 25
0.86 0.05 0.08
Matches are distributed among these distances:
256 10 0.04
257 24 0.09
258 33 0.13
259 18 0.07
260 103 0.40
261 20 0.08
262 35 0.14
263 13 0.05
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (258 bp):
GATGGCCCGAAGGACTTCAAATCAAGAAACCCCGAGGCTTAATTTCTAAAACTCATTTGAAACAT
CCTGCACTGAAGGTCTTATGGATGGCCAGAAGGACTTACAATCAAGAAACCCGAAGCTTAGTTTC
TTAAATCTCATTGAAACATCTTGCACTGCAAGTCTTATAGATGGCCCGAAGACTTATAAATCAAG
AAACACACGAAGGCTTAGTTTCTTAAATCTCAATTGAAAACATGCTACACTGAAGGTCTTATG
Found at i:172362 original size:87 final size:87
Alignment explanation
Indices: 171824--172364 Score: 725
Period size: 87 Copynumber: 6.2 Consensus size: 87
171814 AAGACTTACT
* * * *
171824 GATGTCCCGGAGGACTTACAATCAAGAAAACCCCG-AGGCTTAATTTCTAAAATCTCATTTG-AA
1 GATGGCCCGAAGGACTTACAATCAAG-AAACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
*
171887 ACGTCCTGCACTGAAGGTCTTATG
65 ACAT-CTGCACTGAAGGTCTTATG
* *
171911 GATGGCCAGAAGGACTTACAATTAAGAAA-CCCGAA-GCTTAGTTTCTTAAATCTCA-TTG-AAA
1 GATGGCCCGAAGGACTTACAATCAAGAAACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAA
171972 CATCTTGCACTGCAA-GTCTTATG
66 CATC-TGCACTG-AAGGTCTTATG
* * *
171995 GATGGCCCGAA-GACTTATAAATCAAGAAACACACGAAGGCTTAGTTTCTTAAATCTCAATTGAA
1 GATGGCCCGAAGGACTTA-CAATCAAGAAAC-CCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
172059 AACATTCTACACTGAAGGTCTTATG
64 AACA-TCTGCACTGAAGGTCTTATG
*
172084 GATGGTCCGAAGGACTT-CAAATCAAG-AACCCCGAAGGCTTAGTTTCTTAAA--TCATTTGAAA
1 GATGGCCCGAAGGACTTAC-AATCAAGAAACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
172145 ACATCCTGCACTGAAGGTCTTA-G
65 ACAT-CTGCACTGAAGGTCTTATG
* *
172168 GATGG-CCGAAGGACTTTCAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTAC-AATCAAGAAACCCC-GAAGGCTTAGTTTCTT-AAATCTCATTTGA
*
172232 AAACATCTGCACTGAAGGTCTTATA
63 AAACATCTGCACTGAAGGTCTTATG
172257 GATGGCCCGAAGGACTTACAATCAAG-AACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAA
1 GATGGCCCGAAGGACTTACAATCAAGAAACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAA
172321 CATGCTGCACTGAAGGTCTTATG
66 CAT-CTGCACTGAAGGTCTTATG
172344 GATGGCCCGAAGGACTTACAA
1 GATGGCCCGAAGGACTTACAA
172365 ATCAGCTCGA
Statistics
Matches: 410, Mismatches: 21, Indels: 46
0.86 0.04 0.10
Matches are distributed among these distances:
83 18 0.04
84 58 0.14
85 58 0.14
86 43 0.10
87 121 0.30
88 31 0.08
89 62 0.15
90 19 0.05
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (87 bp):
GATGGCCCGAAGGACTTACAATCAAGAAACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAA
CATCTGCACTGAAGGTCTTATG
Found at i:172426 original size:128 final size:127
Alignment explanation
Indices: 172251--172491 Score: 389
Period size: 127 Copynumber: 1.9 Consensus size: 127
172241 CACTGAAGGT
*
172251 CTTATAGATGGCCCGAAGGACTTACAATCAAGAACCCCGAAGGCTTAGTTTCTTAAATCTCATTT
1 CTTATAGATGGCCCGAAGGACTTACAATCAAGAACCCCGAAGGCTTAGTTTCTAAAATCTCA-TT
*
172316 GAAAACATGCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAGCTCGAAAGA
65 GAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAGCTCGAAAGA
* *
172379 CTTAT-GA-GGCCCGGAGGACTTACAAATCAAGAAACCCCCGAA-GCTTAGTTTCTAAAATCTTA
1 CTTATAGATGGCCCGAAGGACTTAC-AATCAAG-AA-CCCCGAAGGCTTAGTTTCTAAAATCTCA
172441 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAA
63 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAA
172492 TTAGAAACCC
Statistics
Matches: 106, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
126 15 0.14
127 59 0.56
128 25 0.24
129 7 0.07
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (127 bp):
CTTATAGATGGCCCGAAGGACTTACAATCAAGAACCCCGAAGGCTTAGTTTCTAAAATCTCATTG
AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAGCTCGAAAGA
Found at i:172478 original size:127 final size:128
Alignment explanation
Indices: 172251--172882 Score: 400
Period size: 132 Copynumber: 4.9 Consensus size: 128
172241 CACTGAAGGT
*
172251 CTTATAGATGGCCCGAAGGACTTACAATCAAGAACCCCGAAGGCTTAGTTTCTTAAATCTCATTT
1 CTTATAGATGGCCCGAAGGACTTACAATCAAGAACCCCGAAGGCTTAGTTTCTAAAATCTCATTT
*
172316 GAAAACATGCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAGCTCGAAAGA
66 GAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAGCTCGAAAGA
* *
172379 CTTAT-GA-GGCCCGGAGGACTTACAAATCAAGAAACCCCCGAA-GCTTAGTTTCTAAAATCTTA
1 CTTATAGATGGCCCGAAGGACTTAC-AATCAAG-AA-CCCCGAAGGCTTAGTTTCTAAAATCTCA
* *
172441 -TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC-AATTAGAAACCCCC
63 TTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAG-----CTC
*
172504 G-AAGG
123 GAAAGA
** *** ** * * * * * *** *
172509 C-T-TAG-TTTCTTAAAATTCATTTGAAAACATCATG--CACGGAAGGTCTATGGATGGCCCGAA
1 CTTATAGATGGC-CCGAA-GGACTT--ACA-ATCAAGAACCCCGAAGG-CT-T--A-GTTTCTAA
* ** * *** **** * *
172569 GGA-CTTACAAATCAAGAAC--CC--C-C-GAAGG-CTTAGTTTCTTAATCGAA-AACAT-C--A
56 -AATC-T-CATTTGAA-AACATCCTGCACTGAAGGTCTTA-TGGATGGCCCGAAGGACTTACAAA
* *
172622 TGCA-CT-GAAGGT
116 T-CAGCTCGAAAGA
*
172634 CTTATAGATGGCCCGAAGGACTTACAAATCAAGAACCCACGAAGGCTTAGTTTCT-TAATCTCAT
1 CTTATAGATGGCCCGAAGGACTTAC-AATCAAGAACCC-CGAAGGCTTAGTTTCTAAAATCTCAT
* *
172698 TTCAAAACATGCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAG
64 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA-GCTCGAAAG
172763 A
128 A
* *
172764 CTTACT-GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGATGGCTTAGTTTCTAAAATCTC
1 CTTA-TAGATGGCCCGAAGGACTTAC-AATCAAG-AA-CCCCGAAGGCTTAGTTTCTAAAATCTC
*
172828 ATTTGAAAATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAAT
62 ATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAAT
172883 TAAAAAACCC
Statistics
Matches: 370, Mismatches: 79, Indels: 106
0.67 0.14 0.19
Matches are distributed among these distances:
118 3 0.01
119 6 0.02
120 3 0.01
121 1 0.00
122 3 0.01
123 2 0.01
124 18 0.05
125 13 0.04
126 29 0.08
127 69 0.19
128 30 0.08
129 17 0.05
130 42 0.11
131 28 0.08
132 70 0.19
133 17 0.05
134 2 0.01
135 6 0.02
136 2 0.01
137 3 0.01
138 3 0.01
139 3 0.01
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (128 bp):
CTTATAGATGGCCCGAAGGACTTACAATCAAGAACCCCGAAGGCTTAGTTTCTAAAATCTCATTT
GAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAGCTCGAAAGA
Found at i:172533 original size:88 final size:86
Alignment explanation
Indices: 172379--172752 Score: 500
Period size: 88 Copynumber: 4.4 Consensus size: 86
172369 GCTCGAAAGA
* * *
172379 CTTAT-GA-GGCCCGGAGGACTTACAAATCAAGAAACCCCCGAA-GCTTAGTTTCTAAAATCTTA
1 CTTATGGATGGCCCGAAGGACTTACAAATCAAG-AACCCCCGAAGGCTTAGTTTCT-TAATCAT-
*
172441 TTGAAAACATCCTGCACTGAAGGT
63 TTGAAAACATCATGCACTGAAGGT
*
172465 CTTATGGATGGCCCGAAGGACTTAC-AAT-TAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTCA
1 CTTATGGATGGCCCGAAGGACTTACAAATCAAG-AACCCCCGAAGGCTTAGTTTCTT--AA-TCA
*
172528 TTTGAAAACATCATGCACGGAAGGT
62 TTTGAAAACATCATGCACTGAAGGT
172553 C-TATGGATGGCCCGAAGGACTTACAAATCAAGAACCCCCGAAGGCTTAGTTTCTTAATC----G
1 CTTATGGATGGCCCGAAGGACTTACAAATCAAGAACCCCCGAAGGCTTAGTTTCTTAATCATTTG
172613 AAAACATCATGCACTGAAGGT
66 AAAACATCATGCACTGAAGGT
* *
172634 CTTATAGATGGCCCGAAGGACTTACAAATCAAGAACCCACGAAGGCTTAGTTTCTTAATCTCATT
1 CTTATGGATGGCCCGAAGGACTTACAAATCAAGAACCCCCGAAGGCTTAGTTTCTTAA--TCATT
*
172699 TCAAAACATGC-TGCACTGAAGGT
64 TGAAAACAT-CATGCACTGAAGGT
172722 CTTATGGATGGCCCGAAGGACTTACAAATCA
1 CTTATGGATGGCCCGAAGGACTTACAAATCA
172753 TGCTCGAAAG
Statistics
Matches: 260, Mismatches: 12, Indels: 30
0.86 0.04 0.10
Matches are distributed among these distances:
81 22 0.08
82 54 0.21
84 2 0.01
85 2 0.01
86 20 0.08
87 39 0.15
88 115 0.44
89 6 0.02
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (86 bp):
CTTATGGATGGCCCGAAGGACTTACAAATCAAGAACCCCCGAAGGCTTAGTTTCTTAATCATTTG
AAAACATCATGCACTGAAGGT
Found at i:172569 original size:214 final size:216
Alignment explanation
Indices: 172177--172582 Score: 657
Period size: 214 Copynumber: 1.9 Consensus size: 216
172167 GGATGGCCGA
* *
172177 AGGACTTTCAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCTGC
172242 ACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAATCAAGAACCCCGAAGGCTTAGTTTCTTAA
66 ACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAATCAAGAACCCCGAAGGCTTAGTTTCTTAA
*
172307 ATCTCATTTGAAAACATGCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAGCT
131 ATCTCATTTGAAAACATGCTGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAGCT
172372 CGAAAGACTTATGAGGCCCGG
196 CGAAAGACTTATGAGGCCCGG
172393 AGGACTTACAAATCAAGAAACCCCCGAA-GCTTAGTTTC-TAAAATCTT-A-TTGAAAACATCCT
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAAT-TTCATTTGAAAACAT-CT
* *
172454 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAT-TAGAAACCCCCGAAGGCTTAGTTTC
64 GCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAATCAAG-AA-CCCCGAAGGCTTAGTTTC
172518 TTAAAAT-TCATTTGAAAACAT-CATGCACGGAAGGTC-TATGGATGGCCCGAAGGACTTACAAA
127 TT-AAATCTCATTTGAAAACATGC-TGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAA
172580 TCA
190 TCA
172583 AGAACCCCCG
Statistics
Matches: 179, Mismatches: 5, Indels: 14
0.90 0.03 0.07
Matches are distributed among these distances:
213 12 0.07
214 79 0.44
215 58 0.32
216 30 0.17
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.25
Consensus pattern (216 bp):
AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCTGC
ACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAATCAAGAACCCCGAAGGCTTAGTTTCTTAA
ATCTCATTTGAAAACATGCTGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAGCT
CGAAAGACTTATGAGGCCCGG
Found at i:172707 original size:169 final size:171
Alignment explanation
Indices: 172379--172752 Score: 523
Period size: 169 Copynumber: 2.2 Consensus size: 171
172369 GCTCGAAAGA
*
172379 CTTAT-GA-GGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGCTTAGTTTCTAAAATCTTAT
1 CTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGCTTAGTTTCTAAAATC----
* * * *
172442 TGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAATTAGAAACCCCCGAA
62 TGAAAACATCATGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAATAAGAAACCCACGAA
*
172507 GGCTTAGTTTCTTAAAATTCATTTGAAAACAT-CATGCACGGAAGGT
127 GGCTTAGTTTCTT-AAATTCATTTCAAAACATGC-TGCACGGAAGGT
*
172553 C-TATGGATGGCCCGAAGGACTTACAAATCAAG-AACCCCCGAAGGCTTAGTTTCT-TAATC-GA
1 CTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAA-GCTTAGTTTCTAAAATCTGA
172614 AAACATCATGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAG-AACCCACGAAG
65 AAACATCATGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTAC-AAT-AAGAAACCCACGAAG
*
172678 GCTTAGTTTCTT-AATCTCATTTCAAAACATGCTGCACTGAAGGT
128 GCTTAGTTTCTTAAAT-TCATTTCAAAACATGCTGCACGGAAGGT
172722 CTTATGGATGGCCCGAAGGACTTACAAATCA
1 CTTATGGATGGCCCGAAGGACTTACAAATCA
172753 TGCTCGAAAG
Statistics
Matches: 184, Mismatches: 8, Indels: 20
0.87 0.04 0.09
Matches are distributed among these distances:
168 3 0.02
169 70 0.38
170 55 0.30
171 2 0.01
173 3 0.02
174 17 0.09
175 34 0.18
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (171 bp):
CTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGCTTAGTTTCTAAAATCTGAA
AACATCATGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAATAAGAAACCCACGAAGGCT
TAGTTTCTTAAATTCATTTCAAAACATGCTGCACGGAAGGT
Found at i:172858 original size:132 final size:130
Alignment explanation
Indices: 172640--172882 Score: 405
Period size: 132 Copynumber: 1.9 Consensus size: 130
172630 AGGTCTTATA
*
172640 GATGGCCCGAAGGACTTACAAATCAAGAACCCACGAAGGCTTAGTTTCTTAATCTCATTTCAAAA
1 GATGGCCCGAAGGACTTACAAATCAAGAACCCACGAAGGCTTAGTTTCTAAATCTCATTTCAAAA
*
172705 CATGCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACT
66 CATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACT
* * * *
172770 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGATGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAG-AACCCACGAAGGCTTAGTTTCT-AAATCTCATTTCAA
*
172835 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAAT
64 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAAT
172883 TAAAAAACCC
Statistics
Matches: 104, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
130 26 0.25
131 20 0.19
132 58 0.56
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (130 bp):
GATGGCCCGAAGGACTTACAAATCAAGAACCCACGAAGGCTTAGTTTCTAAATCTCATTTCAAAA
CATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACT
Found at i:172923 original size:90 final size:87
Alignment explanation
Indices: 172770--173056 Score: 411
Period size: 90 Copynumber: 3.3 Consensus size: 87
172760 AAGACTTACT
* * *
172770 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGATGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTTAAATCTCATTTG-A
172835 AATATCCTGCACTGAAGGTCTTATG
64 AATATCCTGCAC-GAAGGTCTTATG
* * *
172860 GATGGCCCGAAGGACTTACAAATTAAAAAACCCCTGAAGGCTTAGTTTCTTAAATTTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCC-GAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
172925 ACATCATGCACGGAAGGTCTTATG
65 ATATCCTGCAC-GAAGGTCTTATG
172949 GA-GGCCCGAAGGACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
* *
173013 TA-GCTACACG-A-GTCTTATG
66 TATCCTGCACGAAGGTCTTATG
173032 GATGGCCCGAAGGACTTACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
173057 TGCTCGAAAG
Statistics
Matches: 179, Mismatches: 16, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
83 10 0.06
84 23 0.13
85 1 0.01
86 4 0.02
87 31 0.17
88 29 0.16
89 29 0.16
90 52 0.29
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (87 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
TATCCTGCACGAAGGTCTTATG
Found at i:172957 original size:220 final size:212
Alignment explanation
Indices: 172558--172972 Score: 595
Period size: 220 Copynumber: 1.9 Consensus size: 212
172548 AAGGTCTATG
*
172558 GATGGCCCGAAGGACTTACAAATCAAGAACCCCCGAAGGCTTAGTTTCTTAATCGAAAACATCAT
1 GATGGCCCGAAGGACTTACAAATCAAGAACCCCCGAAGGCTTAGTTTCTAAATCGAAAACATCAT
* *
172623 GCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAACCCACGAAGGCTTAGTTTC
66 GCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATAAAAAACCCACGAAGGCTTAGTTTC
*
172688 TTAATCTCATTTCAAAACATGCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
131 TTAATCTCATTTCAAAACATGCTGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
172753 TGCTCGAAAGACTTACT
196 TGCTCGAAAGACTTACT
* *
172770 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGATGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAG-AACCCCCGAAGGCTTAGTTTCT-AAA--TC----GAA
* * *
172835 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATTAAAAAACCC-CTGAAG
58 AACATCATGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAA-TAAAAAACCCAC-GAAG
* *
172899 GCTTAGTTTCTTAAATTTCATTT-GAAACAT-CATGCACGGAAGGTCTTATGGA-GGCCCGAAGG
121 GCTTAGTTTCTT-AATCTCATTTCAAAACATGC-TGCACGGAAGGTCTTATGGATGGCCCGAAGG
172961 ACTTACAAATCA
184 ACTTACAAATCA
172973 AGAAACCCCG
Statistics
Matches: 180, Mismatches: 11, Indels: 16
0.87 0.05 0.08
Matches are distributed among these distances:
212 26 0.14
213 21 0.12
214 2 0.01
216 2 0.01
220 71 0.39
221 49 0.27
222 9 0.05
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (212 bp):
GATGGCCCGAAGGACTTACAAATCAAGAACCCCCGAAGGCTTAGTTTCTAAATCGAAAACATCAT
GCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATAAAAAACCCACGAAGGCTTAGTTTC
TTAATCTCATTTCAAAACATGCTGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
TGCTCGAAAGACTTACT
Found at i:173279 original size:91 final size:88
Alignment explanation
Indices: 173084--173357 Score: 349
Period size: 89 Copynumber: 3.1 Consensus size: 88
173074 GATGGCCCGG
*
173084 AGGACTTACAAATCAA-AAACCCCCCGAAGGCTTAGTTTC-TAAATCTCATTTAAAACATCCTGC
1 AGGACTAACAAATCAAGAAA-CCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAACATCCTGC
* * *
173147 ACTGAAGGTC-TATGAATGCCCGA
65 ACCGAAGGTCTTATGGATGCTCGA
* * * * *
173170 AGGACTTACAAATTAAGAAACCCCCGAAGGCTTAGTATCTTAAAATTTCATTTGAAAACATCATG
1 AGGACTAACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTT-AAAACATCCTG
* *
173235 CTCGGAAGGTCTTATGGATGACTCGA
64 CACCGAAGGTCTTATGGATG-CTCGA
*
173261 AGGACTAACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAACATCCTACA
1 AGGACTAACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAACATCCTGCA
* *
173326 CCGAAGGTCTTATGGTTGGCTTGA
66 CCGAAGGTCTTATGGAT-GCTCGA
173350 A-GACTAAC
1 AGGACTAAC
173358 GCATCATGCT
Statistics
Matches: 163, Mismatches: 18, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
86 33 0.20
87 4 0.02
88 17 0.10
89 49 0.30
90 18 0.11
91 42 0.26
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (88 bp):
AGGACTAACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAACATCCTGCA
CCGAAGGTCTTATGGATGCTCGA
Found at i:173845 original size:259 final size:264
Alignment explanation
Indices: 173261--175453 Score: 1920
Period size: 259 Copynumber: 8.4 Consensus size: 264
173251 GATGACTCGA
* * * *
173261 AGGACTAACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTT-AAAACATCCTAC
1 AGGACTTACAAATCAAGAAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
* * ** * *
173325 ACCGAAGGTCTTATGGTTGGCTTGAA-GACTAACGCATCATGCTCGAAAGACTTAATGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
*
173389 ---GGACTTACAAATCAAGAAACCCTCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
131 GGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
* **
173451 GGACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCG-AAGACTTACTGATGGC
196 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGC
*
173515 CCGG
261 CCAG
* *
173519 A-GACTTACAAATC-AG-AAACCCTCGAAGGCTTAGTTTC-GAAATCTCATTTGAAAAC-TCATG
1 AGGACTTACAAATCAAGAAAACCC-CGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTG
* *
173579 CACTGAAGGTCTTTTAGATGGCCCGAAGGACTT-CGCATCATGCTCGAAAGACTTACTGATGGGC
65 CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGAT-GGC
173643 CCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCA-TT-AAAACATC
129 CCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATC
* * *
173706 CTGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATTAT-TTCGAAAGACTTACTGATG
194 CTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATG
*
173770 GCCTAG
259 GCCCAG
* *
173776 AGGACTTAAAAATCAAG-AATCCCCGAAGGCTTAG-TTCTAAAATCTCATTTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
* * *
173839 ACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTAATGATAGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
* *
173904 GGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATCCT
131 GGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
* *
173969 GCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCTCGAAAGACTTACTGATGAC
196 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGC
174034 CCAG
261 CCAG
* * *
174038 AGGACTTACAAATCAAGAAAACCCCAAAAGCTTAGTTTCTAAAA-CATCATTTG-AAATATCCTG
1 AGGACTTACAAATCAAGAAAACCCCGAAGGCTTAGTTTCTAAAATC-TCATTTGAAAACATCCTG
** * ** ** ** * *
174101 CAGAGAAGGTCTTATGGA---CCCGAA-AACTTA--CAAAAT-CAAG-AA-AC-CCCCGA-AG--
65 CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCC
** ** * * * * * **
174153 CTTAGTTTCTTA-AATATCATTTGAAAACATCCTGTA--CTGAAAGTTT-TATGGATGGCTCGGA
130 CGGAG-GACTTACAA-ATCA--AG-AAAC-CCCCGAAGGCT--TAGTTTCTA-AAAT--CTC---
** * ***** * * ** *** ** * **
174214 GGACTTACAAATAGAGAAACCCCCGAAGG-CTTAT---TTTCTTAAAATTTCATTTGAAAACATC
181 --A-TTTGAAA-ACATCCTGCACTGAAGGTCTTATGGATGGC-CCGAA--GGACTT--ACGCATC
* * * *
174275 TTGCACGGAAGGTCTTA-TAGATGGCCC-G
237 ATGCTC-GAAAGACTTACT-GATGGCCCAG
* * *
174303 AAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAATATCCTG
1 -AGGACTTACAAATCAAGAAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTG
* ** *
174368 CACTGAAGGTCTTATGGATGGCTCGAAGGACTTACAAATCATGCTCGAAAGACTTACCGATGGCC
65 CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCC
*
174433 CGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCC
130 CGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCC
* *
174498 TGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCCCGAAAGACTTACTGATGG
195 TGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGG
174563 CCCAG
260 CCCAG
* * *
174568 AGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAAAATATCCTGC
1 AGGACTTACAAATCAAGAAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
* * ** * * *
174633 ACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCG-AAGGCTTAGTTTC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATG-----CTCGAAAGACTTA----C
* ** ** ** * * * ***
174697 TTAAATCTCATTGGAAAACATCCTGCACTGAAAGTTTTATGGATGGCCCGAAGGACTTA-----T
122 -T-GATGGC-CCGGAGGAC-T--T--AC--AAA---TCAAGAAACCCCCGAAGG-CTTAGTTTCT
* ** *** ** * **
174757 -AAA--TCA--AG-AAAC--CC--C-C-GAAGG-CTTA--G-TTTCTTAAATTTCATTTGAAAAC
173 AAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAA--GGACTT--ACGC
* * * ** *
174806 A-CATGCACTGAAGGTCTTATGGATGGCCGA-
234 ATCATGCTC-GAAAGACTTACTGATGGCCCAG
* *
174836 AGGACTTACAAATCAAG-AAACCGTCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTG
1 AGGACTTACAAATCAAGAAAACC-CCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTG
* *
174900 CACTGAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTTAATGATGGCC
65 CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCC
* * * * *
174965 CAGAGGACTTATAAATCAAGAAACCCCCGAAGGCTTGGTTTCTAAAATATCATTTGAAAATATCC
130 CGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCC
* *
175030 TGCACTAAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTTACTGATGG
195 TGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGG
**
175095 CCTGG
260 CCCAG
* *
175100 A-GACTTACAAATCAAG-AACCCCCGAAAGCTTAGTTTCT--AATCTCA-TTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
*
175160 ACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
* * * *
175225 GGAGGACTTACAAATCAAGAAACCCCCGAAGACTTTGTTTCTAAAATCTCATTTGAAAGCATCTT
131 GGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
* * * *
175290 ACACTGAAGGTCTTATGGATGACCCGAAGGTCTTACGCATCATGCTCGAAAGACTTACTGATGTC
196 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGC
*
175355 CCGG
261 CCAG
* * *
175359 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTTATTTGAAAACGTCCTGC
1 AGGACTTACAAATCAAGAAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
*
175424 ACTAAAGGTCTTATGGATGGCCCGAAGGAC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGAC
175454 CTACAAATCA
Statistics
Matches: 1547, Mismatches: 260, Indels: 250
0.75 0.13 0.12
Matches are distributed among these distances:
246 3 0.00
247 12 0.01
250 8 0.01
251 9 0.01
252 6 0.00
253 5 0.00
254 11 0.01
255 79 0.05
256 38 0.02
257 95 0.06
258 45 0.03
259 349 0.23
260 57 0.04
261 74 0.05
262 55 0.04
263 103 0.07
264 199 0.13
265 28 0.02
266 73 0.05
267 52 0.03
268 108 0.07
269 29 0.02
270 8 0.01
271 6 0.00
272 1 0.00
273 8 0.01
274 5 0.00
275 22 0.01
276 9 0.01
277 7 0.00
278 5 0.00
279 8 0.01
280 10 0.01
281 1 0.00
282 3 0.00
285 12 0.01
286 4 0.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (264 bp):
AGGACTTACAAATCAAGAAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
GGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCT
GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGC
CCAG
Found at i:173981 original size:132 final size:132
Alignment explanation
Indices: 173261--175453 Score: 1930
Period size: 132 Copynumber: 16.7 Consensus size: 132
173251 GATGACTCGA
* *
173261 AGGACTAACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTT-AAAACATCCTAC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
* * ** * *
173325 ACCGAAGGTCTTATGGTTGGCTTGAA-GACTAACGCATCATGCTCGAAAGACTTAATGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
173389 --
131 GG
* * *
173389 -GGACTTACAAATCAAGAAACCCTCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGG
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
**
173453 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCG-AAGACTTACTGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
173517 GG
131 GG
* * *
173519 A-GACTTACAAATC-AGAAACCCTCGAAGGCTTAGTTTC-GAAATCTCATTTGAAAAC-TCATGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
* *
173580 ACTGAAGGTCTTTTAGATGGCCCGAAGGACTT-CGCATCATGCTCGAAAGACTTACTGATGGGCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGAT-GGCC
173644 CGG
130 CGG
*
173647 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCA-TT-AAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
* * * *
173710 ACGGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATTAT-TTCGAAAGACTTACTGATGGCCT
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
*
173774 AG
131 GG
* * *
173776 AGGACTTAAAAATCAAG-AATCCCCGAAGGCTTAG-TTCTAAAATCTCATTTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
* * *
173839 ACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTAATGATAGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
173904 GG
131 GG
*
173906 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
* *
173971 ACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCTCGAAAGACTTACTGATGACCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
*
174036 AG
131 GG
* * * * *
174038 AGGACTTACAAATCAAGAAAACCCCAAAAGCTTAGTTTC-TAAAACATCATTTG-AAATATCCTG
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATC-TCATTTGAAAACATCCTG
** * ** ** ** * *
174101 CAGAGAAGGTCTTATGGA---CCCGAA-AACTTA--CAAAAT-CAAG-AA-AC-CCCCGA-AG--
65 CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCC
**
174153 CTT
130 CGG
** * * * * * **
174156 AGTTTCTTA-AATATCATTTGAAAACATCCTGTA--CTGAAAGTTT-TATGGATGGCTCGGAGGA
1 AG-GACTTACAA-ATCA--AG-AAAC-CCCCGAAGGCT--TAGTTTCT-TAAAT--CTC-----A
** * ***** * * ** *** ** * ** *
174217 CTTACAAATAGAGAAACCCCCGAAGG-CTTAT---TTTCTTAAAATTTCATTTGAAAACATCTTG
50 -TTTGAAA-ACATCCTGCACTGAAGGTCTTATGGATGGC-CCGAA--GGACTT--ACGCATCATG
* * * *
174278 CACGGAAGGTCTTA-TAGATGGCCCGA
108 CTC-GAAAGACTTACT-GATGGCCCGG
*
174304 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAATATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
* ** *
174369 ACTGAAGGTCTTATGGATGGCTCGAAGGACTTACAAATCATGCTCGAAAGACTTACCGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
174434 GG
131 GG
174436 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
* *
174501 ACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCCCGAAAGACTTACTGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
*
174566 AG
131 GG
* * * * *
174568 AGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAAAATATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
* * * ** ** * *
174633 ACGGAAGGTCTTATGGATGACCCGAAGGACTTA--CA-AAT-CAAG-AA-AC-CCCCGAAGG--C
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
**
174689 TT
131 GG
** * * ** ** **
174691 AGTTTCTTA-AATCTCATTGGAAAACATCCTGCACTGAAAGTTTTATGGATGGCCCGAAGGA-CT
1 AG-GACTTACAA-ATCA--AG-AAAC--CC--C-C-G-AAGGCTTA--G-T-TTCTTAA--ATCT
* * * * ** *** ** * **
174754 TATAAATCAAGAA-A-CC--C-CCGAAGG-CTTA--G-TTTCTTAAATTTCATTTGAAAACA-CA
48 CAT--TTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAA--GGACTT--ACGCATCA
* * * *
174809 TGCACTGAAGGTCTTA-TGGATGG-CCGA
106 TGCTC-GAAAGACTTACT-GATGGCCCGG
**
174836 AGGACTTACAAATCAAGAAACCGTCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
* *
174901 ACTGAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTTAATGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
*
174966 AG
131 GG
* * * * *
174968 AGGACTTATAAATCAAGAAACCCCCGAAGGCTTGGTTTCTAAAATATCATTTGAAAATATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
* * *
175033 ACTAAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTTACTGATGGCCT
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
175098 GG
131 GG
*
175100 A-GACTTACAAATCAAG-AACCCCCGAAAGCTTAGTTTC-T-AATCTCA-TTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
*
175160 ACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
175225 GG
131 GG
* * * * * *
175227 AGGACTTACAAATCAAGAAACCCCCGAAGACTTTGTTTCTAAAATCTCATTTGAAAGCATCTTAC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
* * *
175292 ACTGAAGGTCTTATGGATGACCCGAAGGTCTTACGCATCATGCTCGAAAGACTTACTGATGTCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
175357 GG
131 GG
* * *
175359 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTTATTTGAAAACGTCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
*
175424 ACTAAAGGTCTTATGGATGGCCCGAAGGAC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGAC
175454 CTACAAATCA
Statistics
Matches: 1666, Mismatches: 279, Indels: 236
0.76 0.13 0.11
Matches are distributed among these distances:
118 5 0.00
119 8 0.00
121 6 0.00
122 5 0.00
123 15 0.01
124 11 0.01
125 11 0.01
126 17 0.01
127 199 0.12
128 124 0.07
129 154 0.09
130 150 0.09
131 108 0.06
132 666 0.40
133 25 0.02
134 23 0.01
135 21 0.01
136 10 0.01
137 11 0.01
138 7 0.00
139 8 0.00
140 8 0.00
141 14 0.01
142 5 0.00
143 14 0.01
144 17 0.01
145 10 0.01
146 1 0.00
147 8 0.00
148 5 0.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (132 bp):
AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
GG
Found at i:174308 original size:91 final size:90
Alignment explanation
Indices: 174038--174934 Score: 657
Period size: 90 Copynumber: 10.1 Consensus size: 90
174028 GATGACCCAG
* * * * * *
174038 AGGACTTACAAATCAAGAAAACCCCAAAAGCTTAGTTTCTAAAACATCATTTG-AAATATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATATCATTTGAAAACATCCTGC
174102 A-GAGAAGGTCTTATGGA---CCCGA
66 ACG-GAAGGTCTTATGGATGGCCCGA
*
174124 A-AACTTACAAAATCAAGAAACCCCCGAA-GCTTAGTTTCTTAAATATCATTTGAAAACATCCTG
1 AGGACTTAC-AAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATATCATTTGAAAACATCCTG
* * * * * *
174187 TACTGAAAGTTTTATGGATGGCTCGG
65 CACGGAAGGTCTTATGGATGGCCCGA
* * *
174213 AGGACTTACAAAT-AGAGAAACCCCCGAAGGCTTATTTTCTTAAAATTTCATTTGAAAACATCTT
1 AGGACTTACAAATCA-AGAAACCCCCGAAGGCTTAGTTTCTT-AAATATCATTTGAAAACATCCT
*
174277 GCACGGAAGGTCTTATAGATGGCCCGA
64 GCACGGAAGGTCTTATGGATGGCCCGA
* *
174304 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAATATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATATCATTTGAAAACATCCTGC
* *
174369 ACTGAAGGTCTTATGGATGGCTCGA
66 ACGGAAGGTCTTATGGATGGCCCGA
* ** * ** ** *
174394 AGGACTTACAAATCATGCTCGAAAGACTTACCGATGGCCCGGAG-GACTTACAA-ATCA--AG-A
1 AGGACTTACAAATCA----AG-AA-AC-CCCCGAAGG--CTTAGTTTCTTA-AATATCATTTGAA
** **
174454 AAC--CC--C-C-GAAGG-CTTA--G-T-TTCTTA
56 AACATCCTGCACGGAAGGTCTTATGGATGGCCCGA
** * * ** ** **
174478 A--A-TCT-CATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGA--A-TT--
1 AGGACT-TACAAATCAAGAA-A-CC--C-CCGAAGG-CTTA--G-T-TTCTTAAATATCATTTGA
** * * * *
174533 ACGCATCATGC-CCGAAAGACTTACT-GATGGCCC-A
55 AAACATCCTGCACGGAAGGTCTTA-TGGATGGCCCGA
* * * *
174567 GAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAAAATATCCTG
1 -AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATATCATTTGAAAACATCCTG
*
174632 CACGGAAGGTCTTATGGATGACCCGA
65 CACGGAAGGTCTTATGGATGGCCCGA
* *
174658 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTGGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATATCATTTGAAAACATCCTGC
* * *
174723 ACTGAAAGTTTTATGGATGGCCCGA
66 ACGGAAGGTCTTATGGATGGCCCGA
* * *
174748 AGGACTTATAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTTCATTTGAAAACA-CATGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATATCATTTGAAAACATCCTGC
*
174812 ACTGAAGGTCTTATGGATGG-CCGA
66 ACGGAAGGTCTTATGGATGGCCCGA
** *
174836 AGGACTTACAAATCAAGAAACCGTCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATATCATTTGAAAACATCCTGC
*
174901 ACTGAAGGTCTTATGGATGGCCCGA
66 ACGGAAGGTCTTATGGATGGCCCGA
*
174926 AGGTCTTAC
1 AGGACTTAC
174935 GCATCATGCT
Statistics
Matches: 640, Mismatches: 112, Indels: 114
0.74 0.13 0.13
Matches are distributed among these distances:
75 3 0.00
76 1 0.00
77 2 0.00
78 5 0.01
79 1 0.00
80 3 0.00
81 6 0.01
82 7 0.01
84 8 0.01
85 34 0.05
86 47 0.07
87 2 0.00
88 69 0.11
89 87 0.14
90 243 0.38
91 80 0.12
92 4 0.01
93 9 0.01
94 3 0.00
95 5 0.01
96 3 0.00
97 6 0.01
98 7 0.01
99 5 0.01
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (90 bp):
AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATATCATTTGAAAACATCCTGC
ACGGAAGGTCTTATGGATGGCCCGA
Found at i:174343 original size:181 final size:175
Alignment explanation
Indices: 174037--174408 Score: 498
Period size: 181 Copynumber: 2.1 Consensus size: 175
174027 TGATGACCCA
*
174037 GAGGACTTACAAATCAAGAAAACCCCAAAAGCTTAGTTTCTAAAACATCATTTGAAATATCCTGC
1 GAGGACTTACAAATCAAGAAAACCCCAAAAGCTTAGTTTCTAAAACATCATTTGAAACATCCTGC
174102 AGAGAAGGTCTTATGGACCCGAAAACTTACAAAATCAAGAAACCCCCGAAGCTTAGTTTCTTAAA
66 AGAGAAGGTCTTATGGACCCGAAAACTTACAAAATCAAGAAACCCCCGAAGCTTAGTTTCTTAAA
* *
174167 TATCATTTGAAAACATCCTGTACTGAAAGTTTTATGGATGGCTCG
131 TATCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGGCTCG
* * * * ** *
174212 GAGGACTTACAAAT-AGAGAAACCCCCGAAGGCTTATTTTCTTAAAATTTCATTTGAAAACATCT
1 GAGGACTTACAAATCA-AGAAAACCCCAAAAGCTTAGTTTC-TAAAACATCATTTG-AAACATCC
* *
174276 TGCACG-GAAGGTCTTATAGATGGCCCGAAGGACTTAC-AAATCAAGAAACCCCCGAAGGCTTAG
63 TGCA-GAGAAGGTCTTAT-G--GACCCGAA-AACTTACAAAATCAAGAAACCCCCGAA-GCTTAG
* * *
174339 TTTCTTAAATCTCATTTGAAAATATCCTGCACTGAAGGTCTTATGGATGGCTCG
122 TTTCTTAAATATCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGGCTCG
*
174393 AAGGACTTACAAATCA
1 GAGGACTTACAAATCA
174409 TGCTCGAAAG
Statistics
Matches: 171, Mismatches: 16, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
174 1 0.01
175 34 0.20
176 12 0.07
177 21 0.12
178 2 0.01
180 26 0.15
181 74 0.43
182 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (175 bp):
GAGGACTTACAAATCAAGAAAACCCCAAAAGCTTAGTTTCTAAAACATCATTTGAAACATCCTGC
AGAGAAGGTCTTATGGACCCGAAAACTTACAAAATCAAGAAACCCCCGAAGCTTAGTTTCTTAAA
TATCATTTGAAAACATCCTGCACTGAAAGTCTTATGGATGGCTCG
Found at i:174446 original size:530 final size:528
Alignment explanation
Indices: 173766--175176 Score: 2214
Period size: 530 Copynumber: 2.7 Consensus size: 528
173756 AAGACTTACT
* * * *
173766 GATGGCCTAGAGGACTTAAAAATCAAG-AATCCCCGAAGGCTTAG-TTCTAAAATCTCATTTGAA
1 GATGGCCGA-AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
173829 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTA
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
* *
173894 ATGATAGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTA
130 ATGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTG
173959 AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCTCGAAAGACT
195 AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCTCGAAAGACT
*
174024 TACTGATGACCCAGAGGACTTACAAATCAAGAAAACCCCAAAAGCTTAGTTTCTAAAACATCATT
260 TACTGATGGCCCAGAGGACTTACAAATCAAGAAAACCCCAAAAGCTTAGTTTCTAAAACATCATT
174089 TG-AAATATCCTGCAGAGAAGGTCTTATGGACCCGAA-AACTTACAAAATCAAGAAACCCCCGAA
325 TGAAAATATCCTGCAG-GAAGGTCTTATGGACCCGAAGAACTTAC-AAATCAAGAAACCCCCGAA
* * * *
174152 -GCTTAGTTTCTTAAATATCATTTGAAAACATCCTGTACTGAAAGTTTTATGGATGGCTCGGAGG
388 GGCTTAGTTTCTTAAATATCATTGGAAAACATCCTGCACTGAAAGTTTTATGGATGGCCCGAAGG
* *
174216 ACTTACAAAT-AGAGAAACCCCCGAAGGCTTATTTTCTTAAAATTTCATTTGAAAACATCTTGCA
453 ACTTACAAATCA-AGAAACCCCCGAAGGCTTAGTTTCTT-AAATTTCATTTGAAAACA-CATGCA
174280 CGGAAGGTCTTATA
515 CGGAAGGTCTTATA
174294 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGG-CCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * **
174359 AATATCCTGCACTGAAGGTCTTATGGATGGCTCGAAGGACTTACAAATCATGCTCGAAAGACTTA
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
**
174424 CCGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTG
130 ATGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTG
*
174489 AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCCCGAAAGACT
195 AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCTCGAAAGACT
* *
174554 TACTGATGGCCCAGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATT
260 TACTGATGGCCCAGAGGACTTACAAATCAAGAAAACCCCAAAAGCTTAGTTTCTAAAACATCATT
*
174619 TGAAAATATCCTGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCG
325 TGAAAATATCCTGCA-GGAAGGTCTTAT-G--GACCCGAAGAACTTACAAATCAAGAAACCCCCG
*
174684 AAGGCTTAGTTTCTTAAATCTCATTGGAAAACATCCTGCACTGAAAGTTTTATGGATGGCCCGAA
386 AAGGCTTAGTTTCTTAAATATCATTGGAAAACATCCTGCACTGAAAGTTTTATGGATGGCCCGAA
*
174749 GGACTTATAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTTCATTTGAAAACACATGCAC
451 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTTCATTTGAAAACACATGCAC
* *
174814 TGAAGGTCTTATG
516 GGAAGGTCTTATA
**
174827 GATGGCCGAAGGACTTACAAATCAAGAAACCGTCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
1 GATGGCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
*
174892 ACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTTAA
66 ACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTAA
* * * * *
174957 TGATGGCCCAGAGGACTTATAAATCAAGAAACCCCCGAAGGCTTGGTTTCTAAAATATCATTTGA
131 TGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGA
* * **
175022 AAATATCCTGCACTAAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAAGACTT
196 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCTCGAAAGACTT
** * * *
175087 ACTGATGGCCTGGA-GACTTACAAATCAAG-AACCCCCGAAAGCTTAGTTTCT-AATC-TCA-TT
261 ACTGATGGCCCAGAGGACTTACAAATCAAGAAAACCCCAAAAGCTTAGTTTCTAAAACATCATTT
* *
175147 GAAAACATCCTGCACTGAAGGTCTTATGGA
326 GAAAATATCCTGCA-GGAAGGTCTTATGGA
175177 TGGCCCGGAG
Statistics
Matches: 816, Mismatches: 56, Indels: 26
0.91 0.06 0.03
Matches are distributed among these distances:
524 2 0.00
526 1 0.00
527 27 0.03
528 24 0.03
529 21 0.03
530 286 0.35
531 38 0.05
532 250 0.31
533 22 0.03
534 45 0.06
535 99 0.12
536 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.25
Consensus pattern (528 bp):
GATGGCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
ACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTAA
TGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGA
AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACGCATCATGCTCGAAAGACTT
ACTGATGGCCCAGAGGACTTACAAATCAAGAAAACCCCAAAAGCTTAGTTTCTAAAACATCATTT
GAAAATATCCTGCAGGAAGGTCTTATGGACCCGAAGAACTTACAAATCAAGAAACCCCCGAAGGC
TTAGTTTCTTAAATATCATTGGAAAACATCCTGCACTGAAAGTTTTATGGATGGCCCGAAGGACT
TACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTTCATTTGAAAACACATGCACGGAAG
GTCTTATA
Found at i:174885 original size:178 final size:180
Alignment explanation
Indices: 174558--174934 Score: 589
Period size: 178 Copynumber: 2.1 Consensus size: 180
174548 AAGACTTACT
174558 GATGGCCC-AGAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGA
1 GATGGCCCGA-AGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGA
* *
174622 AAATATCCTGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
65 AAACATCATGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
*
174687 GCTTAGTTTCTTAAATCTCATTGGAAAACATCCTGCACTGAAAGTTTTATG
130 GCTTAGTTTCTTAAATCTCATTGGAAAACATCCTGCACTGAAAGTCTTATG
* * * * *
174738 GATGGCCCGAAGGACTTATAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAA
* * **
174803 AACA-CATGCACTGAAGGTCTTATGGATG-GCCGAAGGACTTACAAATCAAGAAACCGTCGAAGG
66 AACATCATGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
* *
174866 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
131 CTTAGTTTCTTAAATCTCATTGGAAAACATCCTGCACTGAAAGTCTTATG
*
174916 GATGGCCCGAAGGTCTTAC
1 GATGGCCCGAAGGACTTAC
174935 GCATCATGCT
Statistics
Matches: 180, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
178 96 0.53
179 22 0.12
180 61 0.34
181 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.26
Consensus pattern (180 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAAACCCCAAAGGCTTAGTTTCTAAAATATCATTTGAA
AACATCATGCACGGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
CTTAGTTTCTTAAATCTCATTGGAAAACATCCTGCACTGAAAGTCTTATG
Found at i:175615 original size:90 final size:90
Alignment explanation
Indices: 175349--176003 Score: 1069
Period size: 90 Copynumber: 7.3 Consensus size: 90
175339 AAGACTTACT
* * * *
175349 GATGTCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTTATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
175414 AACGTCCTGCACTAAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
175439 GATGGCCCGAAGGACCTACAAATCAAGAAA-CCCCGAAGTCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
175503 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * *
175528 GATGGCCCGAAGGACTTACAAATCAAGAAACACCTGAAGGTTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
175593 AACGTCCTACACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
175618 GATGGTCCGAAGGACTAACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
175683 AACATCTTGCACTGAAGGTCTTAGG
66 AACATCCTGCACTGAAGGTCTTATG
* * * * *
175708 GATGACTCAAAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
*
175773 AAACATCCTGCACTGAAGGTCTTATA
65 AAACATCCTGCACTGAAGGTCTTATG
175799 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
175864 AACATCCTGCACTGAAGGTCTTATA
66 AACATCCTGCACTGAAGGTCTTATG
175889 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
175954 AACATGCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
175979 GATGGCCCGAAGGACTTACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
176004 TGCTCGAAAG
Statistics
Matches: 522, Mismatches: 41, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
89 83 0.16
90 357 0.68
91 82 0.16
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:175737 original size:180 final size:180
Alignment explanation
Indices: 175349--176003 Score: 1069
Period size: 181 Copynumber: 3.6 Consensus size: 180
175339 AAGACTTACT
* * * *
175349 GATGTCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTTATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * *
175414 AACGTCCTGCACTAAAGGTCTTATGGATGGCCCGAAGGACCTACAAATCAAGAAA-CCCCGAAGT
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
175478 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
131 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
* * *
175528 GATGGCCCGAAGGACTTACAAATCAAGAAACACCTGAAGGTTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * *
175593 AACGTCCTACACTGAAGGTCTTATGGATGGTCCGAAGGACTAACAAATCAAGAAACCCCCGAAGG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
* *
175658 CTTAGTTTCTTAAATCTCATTTGAAAACATCTTGCACTGAAGGTCTTAGG
131 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
* * * * *
175708 GATGACTCAAAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
*
175773 AAACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAG
*
175838 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATA
130 GCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
175889 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
175954 AACATGCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
176004 TGCTCGAAAG
Statistics
Matches: 438, Mismatches: 36, Indels: 3
0.92 0.08 0.01
Matches are distributed among these distances:
179 108 0.25
180 163 0.37
181 167 0.38
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (180 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
Found at i:175847 original size:271 final size:268
Alignment explanation
Indices: 175349--176003 Score: 1067
Period size: 271 Copynumber: 2.4 Consensus size: 268
175339 AAGACTTACT
* * * *
175349 GATGTCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTTATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * *
175414 AACGTCCTGCACTAAAGGTCTTATGGATGGCCCGAAGGACCTACAAATCAAGAAACCCCGAAGTC
66 AACAT-CTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCGAAGGC
*
175479 TTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACT
130 TTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACT
* * *
175544 TACAAATCAAGAAACACCTGAAGGTTTAGTTTCTTAAATCTCATTTGAAAACGTCCTACACTGAA
195 TACAAATCAAGAAACACCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTACACTGAA
*
175609 GGTCTTATG
260 GGTCTTATA
* *
175618 GATGGTCCGAAGGACTAACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * *
175683 AACATCTTGCACTGAAGGTCTTAGGGATGACTCAAAGGACTTACAAATCAAGAAACCCCTGAAGG
66 AACATC-TGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCC-GAAGG
*
175748 CTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGA
129 CTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGA
* *
175813 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTG
193 CTTACAAATCAAGAAACACCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTACACTG
175878 AAGGTCTTATA
258 AAGGTCTTATA
175889 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
175954 AACATGCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
66 AACAT-CTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
176004 TGCTCGAAAG
Statistics
Matches: 354, Mismatches: 28, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
268 1 0.00
269 109 0.31
270 15 0.04
271 228 0.64
272 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (268 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCGAAGGCT
TAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTT
ACAAATCAAGAAACACCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTACACTGAAG
GTCTTATA
Found at i:176126 original size:132 final size:132
Alignment explanation
Indices: 175889--176536 Score: 528
Period size: 132 Copynumber: 4.9 Consensus size: 132
175879 AGGTCTTATA
*
175889 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
175954 AACATGCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCACGAAAGACTTA
176019 CT
131 CT
* *
176021 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTTATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* **
176086 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAAT--T--AAG-AA-AC-CC
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCACGAAAGACTTA
*
176144 CC
131 CT
* ** ** * * *
176146 GAAGG--CTTAGTTTCTTA-AAATTTCATTTGAAAACATCATGCACGGAAGGTCTTATGGATGGC
1 GATGGCCCGAAG-GACTTACAAA--TCA--AG-AAAC--C---C-CCGAAGG-CTTA--G-T--T
* * * ** * ** *** ** *
176208 CCGAAGGA-CTTACAAATCAAGAA-A-CCT-C-C-GAAGG-CTTA--G-TTTCTTAAATCTCATT
48 TCTAA-AATC-T-CATTTGAA-AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAA--GGACT
* * * *
176263 TGAAAACATCCTGCACTGAAGGTCTTA-T
107 T-ACAA-ATCATGCAC-GAAAGACTTACT
* *
176291 AGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAA
1 -GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
* *
176356 AAACATGCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTT
65 AAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCACGAAAGACTT
176421 ACT
130 ACT
*
176424 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
176489 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAAT
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAAT
176537 TAAGAAACCC
Statistics
Matches: 394, Mismatches: 73, Indels: 98
0.70 0.13 0.17
Matches are distributed among these distances:
123 6 0.02
124 4 0.01
125 8 0.02
126 2 0.01
127 3 0.01
128 7 0.02
129 6 0.02
130 6 0.02
131 4 0.01
132 226 0.57
133 15 0.04
134 18 0.05
135 8 0.02
136 8 0.02
137 18 0.05
138 9 0.02
139 1 0.00
140 6 0.02
141 6 0.02
142 6 0.02
143 7 0.02
144 2 0.01
145 1 0.00
146 7 0.02
147 4 0.01
148 6 0.02
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (132 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCACGAAAGACTTA
CT
Found at i:176286 original size:313 final size:313
Alignment explanation
Indices: 175718--176316 Score: 1076
Period size: 313 Copynumber: 1.9 Consensus size: 313
175708 GATGACTCAA
*
175718 AGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTG
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTG
175783 CACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC
66 CACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC
* *
175848 TTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATC
131 TTAAATCTCATTTGAAAACATCATGCACGGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATC
*
175913 AAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATGCTGCACTGAAGGTCTTAT
196 AAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTAT
*
175978 GGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGATGGCCCGG
261 AGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGATGGCCCGG
176031 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATCTT-ATTTGAAAACATCCT
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAAT-TTCATTTGAAAACATCCT
* *
176094 GCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTT
65 GCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTT
* *
176159 CTTAAAATTTCATTTGAAAACATCATGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAA
130 CTT-AAATCTCATTTGAAAACATCATGCACGGAAGGTCTTATAGATGGCCCGAAGGACTTACAAA
*
176224 TCAAGAAACCTCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTT
194 TCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTT
176289 ATAGATGGCCCGAAGGACTTACAAATCA
259 ATAGATGGCCCGAAGGACTTACAAATCA
176317 AGAAACCCCC
Statistics
Matches: 274, Mismatches: 10, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
312 87 0.32
313 187 0.68
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.26
Consensus pattern (313 bp):
AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTG
CACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC
TTAAATCTCATTTGAAAACATCATGCACGGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATC
AAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTAT
AGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACTGATGGCCCGG
Found at i:176315 original size:90 final size:90
Alignment explanation
Indices: 176021--176406 Score: 664
Period size: 90 Copynumber: 4.3 Consensus size: 90
176011 AAGACTTACT
* * *
176021 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTTATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
176086 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
176111 GATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* *
176176 AAACATCATGCACGGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
*
176202 GATGGCCCGAAGGACTTACAAATCAAGAAACCTCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
176267 AACATCCTGCACTGAAGGTCTTATA
66 AACATCCTGCACTGAAGGTCTTATG
*
176292 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
176357 AACATGCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
176382 GATGGCCCGAAGGACTTACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
176407 TGCTCGAAAG
Statistics
Matches: 278, Mismatches: 17, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
90 194 0.70
91 84 0.30
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.25
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:176325 original size:181 final size:180
Alignment explanation
Indices: 176021--176406 Score: 666
Period size: 181 Copynumber: 2.1 Consensus size: 180
176011 AAGACTTACT
* *
176021 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTTATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
176086 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGG
66 AACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
* *
176151 CTTAGTTTCTTAAAATTTCATTTGAAAACAT-CATGCACGGAAGGTCTTATG
131 CTTAGTTTCTT-AAATCTCATTTAAAAACATGC-TGCACGGAAGGTCTTATG
* *
176202 GATGGCCCGAAGGACTTACAAATCAAGAAACCTCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
176267 AACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
66 AACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
*
176332 CTTAGTTTCTTAAATCTCATTTAAAAACATGCTGCACTGAAGGTCTTATG
131 CTTAGTTTCTTAAATCTCATTTAAAAACATGCTGCACGGAAGGTCTTATG
176382 GATGGCCCGAAGGACTTACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
176407 TGCTCGAAAG
Statistics
Matches: 195, Mismatches: 9, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
180 59 0.30
181 136 0.70
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.25
Consensus pattern (180 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
CTTAGTTTCTTAAATCTCATTTAAAAACATGCTGCACGGAAGGTCTTATG
Found at i:176382 original size:403 final size:403
Alignment explanation
Indices: 175618--176719 Score: 1979
Period size: 403 Copynumber: 2.7 Consensus size: 403
175608 AGGTCTTATG
* * * *
175618 GATGGTCCGAAGGACTAACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * * * * *
175683 AACATCTTGCACTGAAGGTCTTAGGGATGACTCAAAGGACTTACAAATCAAGAAACCCCTGAAGG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGG
* * *
175748 CTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGA
131 CTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACGGAAGGTCTTATGGATGGCCCGAAGGA
175813 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTG
196 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTG
175878 AAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAA
261 AAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAA
*
175943 TCTCATTTGAAAACATGCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCT
326 TCTCATTTAAAAACATGCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCT
176008 CGAAAGACTTACT
391 CGAAAGACTTACT
*
176021 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTTATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
176086 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGG
176151 CTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACGGAAGGTCTTATGGATGGCCCGAAGGA
131 CTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACGGAAGGTCTTATGGATGGCCCGAAGGA
*
176216 CTTACAAATCAAGAAACCTCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTG
196 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTG
176281 AAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAA
261 AAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAA
176346 TCTCATTTAAAAACATGCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCT
326 TCTCATTTAAAAACATGCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCT
176411 CGAAAGACTTACT
391 CGAAAGACTTACT
176424 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
176489 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGG
* * *
176554 CTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACGGAAGGACATATGGATGGCCCGAAGGT
131 CTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACGGAAGGTCTTATGGATGGCCCGAAGGA
* * *
176619 CATACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATGCTACACTG
196 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTG
*
176684 AAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
261 AAGGTCTTATAGATGGCCCGAAGGACTTACAAATCA
176720 TGCTCGAAAG
Statistics
Matches: 672, Mismatches: 27, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
403 672 1.00
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (403 bp):
GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGG
CTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACGGAAGGTCTTATGGATGGCCCGAAGGA
CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTG
AAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAA
TCTCATTTAAAAACATGCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCT
CGAAAGACTTACT
Found at i:176430 original size:313 final size:313
Alignment explanation
Indices: 175799--177153 Score: 1796
Period size: 313 Copynumber: 4.3 Consensus size: 313
175789 AGGTCTTATA
* *
175799 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
175864 AACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
175929 CTTAGTTTCTT-AAATCTCATTTGAAAACATGC-TGCACTGAAGGTCTTATGGATGGCCCGAAGG
131 CTTAGTTTCTTAAAATCTCATTTGAAAACAT-CATGCACTGAAGGTCTTATGGATGGCCCGAAGG
* * * ** **** ** * * * **
175992 ACTTACAAATCATG-----CTCGAAAGACTTACTGATGGCCCGGA--GGACTTACAAATCAAGAA
195 ACTTACAAATCAAGAAACCCCCG-AAGGCTTA--G-TTTCTTAAATCTCATTTA-AAAACATGCT
* * ** *** ** * * * * * *
176050 ACCCCCGAAGG-CTTA--G-TTTCTAAAATCTTATTTGAAAACATCCTGCACTGAAGGTCTTA-T
255 A-CACTGAAGGTCTTATGGATGGCCCGAA--GGACTT-ACAA-ATCATGCTC-GAAAGACTTACT
* * *
176110 GGATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTG
1 -GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATCTCATTTG
* * *
176175 AAAACATCATGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCTCCGAA
64 AAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAA
* *
176240 GGCTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAG
129 GGCTTAGTTTCTTAAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAG
*
176304 GACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATGCTGCAC
194 GACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATGCTACAC
176369 TGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACT
259 TGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACT
176424 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
176489 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
* * * * *
176554 CTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACGGAAGGACATATGGATGGCCCGAAGGT
131 CTTAGTTTCTTAAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGA
* *
176619 CATACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATGCTACACTG
196 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATGCTACACTG
176684 AAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACT
261 AAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACT
*
176737 GAAGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
176802 AACATCCTGCACTGAAGGTTTTATGAATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
* * * *
176867 CTTAGTATCTTAAAATTTCATTTGAAAACATCATGCTC-GGAGGTCTTATGGATGGCCCGAAGGA
131 CTTAGTTTCTTAAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGA
*
176931 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTT-AAAACATCCTACACTG
196 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATGCTACACTG
* ** * * ** *
176995 -AGGTCTTATGGTTGGCTTG-AGAACTAACGCATCATGCT-GAAAGACTTAAT
261 AAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACT
*
177045 GATGGCCCGGAGGACTTACAAATCAAGAAACCCTCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
177110 AACATCATGCTCTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
177154 GCATCATGTT
Statistics
Matches: 944, Mismatches: 84, Indels: 34
0.89 0.08 0.03
Matches are distributed among these distances:
308 114 0.12
309 15 0.02
310 16 0.02
311 15 0.02
312 204 0.22
313 526 0.56
314 18 0.02
315 14 0.01
316 7 0.01
317 8 0.01
318 7 0.01
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (313 bp):
GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
CTTAGTTTCTTAAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGA
CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATGCTACACTG
AAGGTCTTATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTACT
Found at i:176612 original size:91 final size:90
Alignment explanation
Indices: 176424--176719 Score: 461
Period size: 90 Copynumber: 3.3 Consensus size: 90
176414 AAGACTTACT
*
176424 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
*
176488 AAATATCCTGCACTGAAGGTCTTATG
66 AAACAT-CTGCACTGAAGGTCTTATG
* *
176514 GATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* * *
176579 AAACATCATGCACGGAAGGACATATG
66 AAACATC-TGCACTGAAGGTCTTATG
* *
176605 GATGGCCCGAAGGTCATACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
*
176669 AAACATGCTACACTGAAGGTCTTATG
66 AAACAT-CTGCACTGAAGGTCTTATG
176695 GATGGCCCGAAGGACTTACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
176720 TGCTCGAAAG
Statistics
Matches: 186, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
90 103 0.55
91 83 0.45
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
AAACATCTGCACTGAAGGTCTTATG
Found at i:176834 original size:403 final size:394
Alignment explanation
Indices: 175531--177010 Score: 1637
Period size: 403 Copynumber: 3.7 Consensus size: 394
175521 TCTTATGGAT
* * * *
175531 GGCCCGAAGGACTTACAAATCAAGAAACACCTGAAGGTTTAGTTTCTTAAATCTCATTTGAAAAC
1 GGCCCGGAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAAAATCTCATTT-AAAAC
* * * *
175596 GTCCTACACTGAAGGTCTTATGGATGGTCCGAAGGACTAACAAATCAAGAAACCCCCGAAGGCTT
65 ATCCTGCACTGAAGGTCTTAT-GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTT
* * * * * *
175661 AGTTTCTTAAATCTCATTTGAAAACATCTTGCACTGAAGGTCTTAGGGATGACTCAAAGGACTTA
129 AGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTA
* * *
175726 CAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCACTGAAG
194 CAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACGGAAG
* *
175791 GTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCT
259 GTCTTATGGATGGCCCGAAGGACATACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCT
175856 CATTTGAAAACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACC
324 CATTTGAAAACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACC
*
175921 CCCGAA
389 ACCGAA
** ** * * ** ***
175927 GG--CTTAGTTTCTTA-AATCTCATTTGAAAACATGCTGCACTGAAGGTCTTATGGATGGCCCGA
1 GGCCCGGAG-GACTTACAA-ATCA--AG-AAAC---C--C-CTGAAGG-CTTA--G-TTTCTAAA
** * * * * * * *
175989 A--GGACTTACAA-ATCATGCTC-GAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAA
51 ATCTCATTTAAAACATCCTGCACTGAAGGTCTTA-TGATGGCCCGAAGGACTTACAAATCAAGAA
*
176050 ACCCCCGAAGGCTTAGTTTCTAAAATCTTATTTGAAAACATCCTGCACTGAAGGTCTTATGGATG
115 ACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATG
*
176115 GCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAAC
180 GCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAAC
* *
176180 ATCATGCACGGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCTCCGAAGGCTT
245 ATCATGCACGGAAGGTCTTATGGATGGCCCGAAGGACATACAAATCAAGAAACCCCCGAAGGCTT
176245 AGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTA
310 AGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTA
*
176310 CAAATCAAGAAACCCCCGAA
375 CAAATCAAGAAACCACCGAA
** ** * * ** ***
176330 GG--CTTAGTTTCTTA-AATCTCATTTAAAAACATGCTGCACTGAAGGTCTTATGGATGGCCCGA
1 GGCCCGGAG-GACTTACAA-ATCA---AGAAAC---C--C-CTGAAGG-CTTA--G-TTTCTAAA
** * * * * * * *
176392 A--GGACTTACAA-ATCATGCTC-GAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAA
51 ATCTCATTTAAAACATCCTGCACTGAAGGTCTTA-TGATGGCCCGAAGGACTTACAAATCAAGAA
*
176453 ACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAATATCCTGCACTGAAGGTCTTATGGATG
115 ACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATG
*
176518 GCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAAC
180 GCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAAC
* * *
176583 ATCATGCACGGAAGGACATATGGATGGCCCGAAGGTCATACAAATCAAGAAACCCCCGAAGGCTT
245 ATCATGCACGGAAGGTCTTATGGATGGCCCGAAGGACATACAAATCAAGAAACCCCCGAAGGCTT
* * *
176648 AGTTTCTTAAATCTCATTTGAAAACATGCTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTA
310 AGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTA
* * *
176713 CAAATCATGCTCGAAAGACTTACTGAA
375 CAAATCA----AG-AA-AC-CACCGAA
*
176740 GGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAAC
1 GGCCCGGAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAAAATCTCATTT-AAAAC
* *
176805 ATCCTGCACTGAAGGTTTTATGAATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGGCTT
65 ATCCTGCACTGAAGGTCTTATG-ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTT
* * * * *
176870 AGTATCTTAAAATTTCATTTGAAAACATCATGCTC-GGAGGTCTTATGGATGGCCCGAAGGACTT
129 AGTTTC-TAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTT
* * * *
176934 ACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTT-AAAACATCCTACACTG-A
193 ACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACGGAA
*
176996 GGTCTTATGGTTGGC
258 GGTCTTATGGATGGC
177011 TTGAGAACTA
Statistics
Matches: 958, Mismatches: 92, Indels: 64
0.86 0.08 0.06
Matches are distributed among these distances:
394 5 0.01
395 7 0.01
396 2 0.00
397 1 0.00
398 8 0.01
399 1 0.00
400 16 0.02
401 20 0.02
402 25 0.03
403 791 0.83
404 39 0.04
405 7 0.01
406 3 0.00
407 2 0.00
408 11 0.01
409 2 0.00
410 6 0.01
411 7 0.01
412 5 0.01
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (394 bp):
GGCCCGGAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAAAATCTCATTTAAAACA
TCCTGCACTGAAGGTCTTATGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAG
TTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACA
AATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACGGAAGGT
CTTATGGATGGCCCGAAGGACATACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCA
TTTGAAAACATCCTGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCAC
CGAA
Found at i:176916 original size:90 final size:90
Alignment explanation
Indices: 176716--177004 Score: 390
Period size: 90 Copynumber: 3.2 Consensus size: 90
176706 GGACTTACAA
* * * *
176716 ATCATGCTCGAAAGACTTACTGAA-GGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTT
1 ATCATGCACGAAGGTCTTA-TGAATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTT
176780 AGTTTC-TAAAATCTCATTTGAAAAC
65 AGTTTCTTAAAATCTCATTTGAAAAC
* * *
176805 ATCCTGCACTGAAGGTTTTATGAATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAAGGCTT
1 ATCATGCAC-GAAGGTCTTATGAATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTT
* *
176870 AGTATCTTAAAATTTCATTTGAAAAC
65 AGTTTCTTAAAATCTCATTTGAAAAC
* * *
176896 ATCATGCTCGGAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTA
1 ATCATGCACGAAGGTCTTATGAATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTA
176961 GTTTCTT-AAATCTCATTT-AAAAC
66 GTTTCTTAAAATCTCATTTGAAAAC
* *
176984 ATCCTACACTG-AGGTCTTATG
1 ATCATGCAC-GAAGGTCTTATG
177005 GTTGGCTTGA
Statistics
Matches: 176, Mismatches: 20, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
88 21 0.12
89 22 0.12
90 108 0.61
91 25 0.14
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (90 bp):
ATCATGCACGAAGGTCTTATGAATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTA
GTTTCTTAAAATCTCATTTGAAAAC
Found at i:177205 original size:132 final size:132
Alignment explanation
Indices: 176895--177547 Score: 944
Period size: 132 Copynumber: 5.0 Consensus size: 132
176885 CATTTGAAAA
* * * *
176895 CATCATGCTCGGAGGTCTTA-TGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCT
1 CATCATGCTCGAAAGACTTACT-GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCT
* * * ** * *
176959 TAGTTTCTTAAATCTCATTT-AAAACATCCTACACTG-AGGTCTTATGGTTGGCTTG-AGAACTA
65 TAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTT
177021 ACG
130 ACG
* *
177024 CATCATGCT-GAAAGACTTAATGATGGCCCGGAGGACTTACAAATCAAGAAACCCTCGAAGGCTT
1 CATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTT
* *
177088 AGTTTCTAAAATCTCATTTGAAAACATCATGCTCTGAAGGTCTTATGGATGGCCCGAAGGACTTA
66 AGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTA
177153 CG
131 CG
* *
177155 CATCATGTTCGAAAGACTTACTAATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTT
1 CATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTT
*
177220 AGTTTCTAAAATCTCATTT-AAAAGCATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGTCTT
66 AGTTTCTAAAATCTCATTTGAAAA-CATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTT
177284 ACG
130 ACG
* * ** * * *
177287 CATCATGCTCGAAATATTTACTGATGGCTAGAAGGACTTATAAATCAAGAAACCCCCGAATGCTT
1 CATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTT
*
177352 AGTTTCTAAAATCTCA-TTG-AAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTA
66 AGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTA
177415 CG
131 CG
*
177417 CATCATGCTCGAAAGACTTACTGATGGCCCGGAGTACTTACAAATCAAGAAACCCCCGAAGGCTT
1 CATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTT
* * * * *
177482 AGTTTCTAAAATCTTATTGGAAAACATCCTGCACTGAAAGTCTTATGGATGACCCCAAGGACTTA
66 AGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTA
177547 C
131 C
177548 AAATCAAGAA
Statistics
Matches: 469, Mismatches: 46, Indels: 15
0.88 0.09 0.03
Matches are distributed among these distances:
128 66 0.14
129 23 0.05
130 129 0.28
131 27 0.06
132 224 0.48
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.26
Consensus pattern (132 bp):
CATCATGCTCGAAAGACTTACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTT
AGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTA
CG
Found at i:177423 original size:262 final size:262
Alignment explanation
Indices: 176918--177547 Score: 962
Period size: 262 Copynumber: 2.4 Consensus size: 262
176908 GGTCTTATGG
* *
176918 ATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAA
1 ATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTAAAA
* * ** * *
176983 CATCCTACACTG-AGGTCTTATGGTTGGCTTG-AGAACTAACGCATCATGCTGAAAGACTTAATG
66 CATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTGAAAGACTTAATG
* * *
177046 ATGGCCCGGAGGACTTACAAATCAAGAAACCCTCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
131 ATGGCCAGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
* *
177111 ACATCATGCTCTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGTTCGAAAGACTTAC
196 ACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTAC
177176 TA
261 TA
177178 ATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTAAAA
1 ATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTAAAA
* * * *
177243 GCATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGTCTTACGCATCATGCTCGAAATATTTAC
66 -CATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCT-GAAAGACTTAA
* * *
177308 TGATGGCTAGAAGGACTTATAAATCAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCA-TTG-
129 TGATGGCCAGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGA
177371 AAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTT
194 AAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTT
*
177436 ACTG
259 ACTA
* * *
177440 ATGGCCCGGAGTACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTTATTGGAAA
1 ATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATT-TAAA
* * *
177505 ACATCCTGCACTGAAAGTCTTATGGATGACCCCAAGGACTTAC
65 ACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
177548 AAATCAAGAA
Statistics
Matches: 337, Mismatches: 28, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
260 63 0.19
261 11 0.03
262 178 0.53
263 23 0.07
264 62 0.18
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.26
Consensus pattern (262 bp):
ATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTAAAA
CATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTGAAAGACTTAATG
ATGGCCAGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAA
ACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTAC
TA
Found at i:177634 original size:91 final size:88
Alignment explanation
Indices: 177452--177729 Score: 378
Period size: 91 Copynumber: 3.1 Consensus size: 88
177442 GGCCCGGAGT
*
177452 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTT-ATTGGAAAACATCCTGCAC
1 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAAT-TTCATTTGAAAACATCCTGCAC
* *
177516 TGAAAGTCTTATGGATGACCCCAAGG
65 -GGAAGTCTTATGGATG-CCCAAAGG
177542 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCCTGCAC
1 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATTTCATTTGAAAACATCCTGCAC
* *
177607 GGAAGCTCTTATGGATAGCTCGAAGG
65 GGAAG-TCTTATGGAT-GCCCAAAGG
* * * *
177633 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCTTTTCAAAAACATCATGCAC
1 ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATTTCATTT-GAAAACATCCTGCAC
*
177698 TGAAGGTCTTATGGATGGCCCAAAGG
65 GGAA-GTCTTATGGAT-GCCCAAAGG
177724 ACTTAC
1 ACTTAC
177730 GCATCATGTT
Statistics
Matches: 170, Mismatches: 12, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
90 53 0.31
91 115 0.68
92 2 0.01
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.26
Consensus pattern (88 bp):
ACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATTTCATTTGAAAACATCCTGCACG
GAAGTCTTATGGATGCCCAAAGG
Found at i:177868 original size:132 final size:132
Alignment explanation
Indices: 177630--178257 Score: 934
Period size: 132 Copynumber: 4.8 Consensus size: 132
177620 GATAGCTCGA
* *
177630 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCTTTTCAAAAACATCATG
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTT-GAAAACATCATG
* * *
177695 CACTGAAGGTCTTATGGATGGCCCAAAGGACTTACGCATCATGTTCAAAAGACTTACTGAAGGCC
65 CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGAAGGCC
**
177760 TAG
130 CGG
* *
177763 AGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGC
* *
177828 ACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTAATGATA-GCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGA-AGGCC
177892 CGG
130 CGG
*
177895 AGGACTTACAAATCAAGAAACCCCCGAAGGATTAGTTTCTAAAATCTCATTTGAAAACATCATGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGC
* ** *
177960 ACTGAAGGTCTTAAGGATAACCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGATGGCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGAAGGCCC
178025 GG
131 GG
** * * *
178027 AGGACTTACAAATCAAGAAACCCCCGAATACTTTGTTTCTAAAATCTCATTTGAAAGCATCTTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGC
* * * ** * * *
178092 ACTGAAGGTCTTATGGATGACCCGAAGGTCTTACGCTTTTTTCTCGAAAGACTTACTGATGTCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGAAGGCCC
178157 GG
131 GG
* * *
178159 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAATTTCTAAAATCTCATTTGAAAACGTCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGC
*
178224 ACTGAAGGTCTTATGGATGGCCAGAAGGACTTAC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
178258 AAATTAAGAA
Statistics
Matches: 449, Mismatches: 44, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
132 398 0.89
133 51 0.11
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (132 bp):
AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGC
ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTACTGAAGGCCC
GG
Found at i:178411 original size:90 final size:90
Alignment explanation
Indices: 178149--178706 Score: 877
Period size: 90 Copynumber: 6.2 Consensus size: 90
178139 AAGACTTACT
* * * *
178149 GATGTCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAATTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
178214 AACGTCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * *
178239 GATGGCCAGAAGGACTTACAAATTAAGAAA-CCCCGAAGGCTTAGTTTCTTAAATATCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
178303 AACATCTTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * * *
178328 GATGGCCCGAAGGACTTATAAATCAAGAAACACACGAAGGCTTAGTTTCTTAAATCTCAATTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
178393 AACATCCTACACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
178418 GATGGTCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
178483 AACATCCTGCACTGAAGGTCTTAGG
66 AACATCCTGCACTGAAGGTCTTATG
* * *
178508 GATGGCTCGAAGGACTTTCAAATCAAG-AACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* * *
178572 AAACATCCTGCATTGAAGTTCTTATA
65 AAACATCCTGCACTGAAGGTCTTATG
* *
178598 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCTTTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
178663 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
178688 GATGGCCCGAAGGACTTAC
1 GATGGCCCGAAGGACTTAC
178707 GCATCATATT
Statistics
Matches: 424, Mismatches: 41, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
89 104 0.25
90 298 0.70
91 22 0.05
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:178845 original size:132 final size:132
Alignment explanation
Indices: 178608--179234 Score: 947
Period size: 132 Copynumber: 4.8 Consensus size: 132
178598 GATGGCCCGA
*
178608 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCTTTTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
* * *
178673 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATATTCAAAAGACTTACTCAAGGCCT
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATACTCGAAAGACTTACTGAAGGCCT
178738 AG
131 AG
*
178740 AGGACTTACAAATCAAGAAATCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
* * *
178805 ACTGAAGGTCTTATGGATGGCCCGGAGGACTTACGCATCATGCTCGAAAGACTTAATGATA-G-C
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATACTCGAAAGACTTACTGA-AGGCC
*
178868 TCGG
130 T-AG
* * *
178872 AGGACTTACAAATCAAGAAACCCCCGAAGGATTAGTTTCTAAAATCTCATTTGAAAACGTCATGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
*
178937 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCA-AGCTCGAAAGACTTACTGATGGCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATA-CTCGAAAGACTTACTGAAGGCC
179001 -AGG
130 TA-G
* * * *
179004 AGGACTTACAAATCAAGAAACCCCCGATGACTTTGTTTCTAAAATCTCATTTGAAAGCATCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
* * * * * *
179069 ACTGAAGGTCTTATGGATGACCCGAAGGTCTTACGCATCATGCTCGAAAGACTTACTGATGTCCC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATACTCGAAAGACTTACTGAAGGCCT
*
179134 GG
131 AG
* * *
179136 AGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAAAATGTCATTTGAAAACGTCCTGC
1 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
179201 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
66 ACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
179235 AAATCAAGAA
Statistics
Matches: 448, Mismatches: 39, Indels: 16
0.89 0.08 0.03
Matches are distributed among these distances:
131 2 0.00
132 444 0.99
133 2 0.00
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (132 bp):
AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATACTCGAAAGACTTACTGAAGGCCT
AG
Found at i:179395 original size:90 final size:90
Alignment explanation
Indices: 179126--179644 Score: 783
Period size: 89 Copynumber: 5.9 Consensus size: 90
179116 AAGACTTACT
* * * * *
179126 GATGTCCCGGAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAAAATGTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
179191 AACGTCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
179216 GATGGCCCGAAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTTAAATTTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
179280 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
179305 GATGGCCCGAAGGACTTACAAATCAAGAAACACACGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* **
179370 AACATCATATACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
179395 G-T---CCGAAGGACTTACAAATCAAG-AACCCCCGAAGGCTTAGTTTCTT-AATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
179454 AACATCCTGCACTGAAGGTCTTAGG
66 AACATCCTGCACTGAAGGTCTTATG
* * *
179479 GAT-GCTCGAAGGACTTTCAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTTCATTTG-A
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
179542 AAC-TCCTGCATTGAAGGTCTTATA
66 AACATCCTGCACTGAAGGTCTTATG
179566 GATGGCCCGAAGGACTTAC-AATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTG-A
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
179629 AACATGCTGCACTGAA
66 AACATCCTGCACTGAA
179645 TGGATGGTCC
Statistics
Matches: 392, Mismatches: 29, Indels: 18
0.89 0.07 0.04
Matches are distributed among these distances:
84 35 0.09
85 22 0.06
86 21 0.05
87 86 0.22
88 50 0.13
89 96 0.24
90 82 0.21
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.27
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:179578 original size:175 final size:178
Alignment explanation
Indices: 179126--179644 Score: 768
Period size: 175 Copynumber: 2.9 Consensus size: 178
179116 AAGACTTACT
* * * * *
179126 GATGTCCCGGAGGACTTACAAATCAAGAAACCCCTGAAGGCTTAGTTTCTAAAATGTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
179191 AACGTCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCGAAGGC
66 AACATCCTGCACTGAAGGTCTTAT-GATGGCCCGAAGGACTTACAAATCAAGAACCCCCGAAGGC
* *
179256 TTAGTTTCTTAAATTTCATTTGAAAACATCCTGCACTGAAGGTCTTATG
130 TTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTAGG
* *
179305 GATGGCCCGAAGGACTTACAAATCAAGAAACACACGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* ** *
179370 AACATCATATACTGAAGGTC-T-T-ATGGTCCGAAGGACTTACAAATCAAGAACCCCCGAAGGCT
66 AACATCCTGCACTGAAGGTCTTATGATGGCCCGAAGGACTTACAAATCAAGAACCCCCGAAGGCT
179432 TAGTTTCTT-AATCTCATTTGAAAACATCCTGCACTGAAGGTCTTAGG
131 TAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTAGG
* * *
179479 GAT-GCTCGAAGGACTTTCAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATTTCATTTG-A
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
179542 AAC-TCCTGCATTGAAGGTCTTATAGATGGCCCGAAGGACTTAC-AATCAAGAAACCCCCGAAGG
66 AACATCCTGCACTGAAGGTCTTAT-GATGGCCCGAAGGACTTACAAATCAAG-AACCCCCGAAGG
*
179605 CTTAGTTTCTTAAATCTCATTTG-AAACATGCTGCACTGAA
129 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAA
179645 TGGATGGTCC
Statistics
Matches: 308, Mismatches: 26, Indels: 16
0.88 0.07 0.05
Matches are distributed among these distances:
171 12 0.04
172 5 0.02
173 55 0.18
174 46 0.15
175 103 0.33
176 11 0.04
177 1 0.00
178 1 0.00
179 74 0.24
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.27
Consensus pattern (178 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGATGGCCCGAAGGACTTACAAATCAAGAACCCCCGAAGGCT
TAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTAGG
Found at i:179861 original size:90 final size:90
Alignment explanation
Indices: 179689--179970 Score: 359
Period size: 90 Copynumber: 3.2 Consensus size: 90
179679 AAGACTTACT
* *
179689 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATTAAGAAACCCCCG-AGGCTTAGTTTCTTAAAATCTCATTTGA
*
179753 AAACATCCTGCATTGAAGGTCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* * *
179779 GATGACCCGAAGGACTTACAAATTAAGAAACCCCCGAGGC-TAGTTTTCTTAAAATTTTATTTGA
1 GATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAGGCTTAG-TTTCTTAAAATCTCATTTGA
* * *
179843 AAACATCATGCACGGAAGGT-TTTTG
65 AAACATCCTGCACTGAAGGTCTTATG
* *
179868 GATGGCCCGAAGG-CTTACAAA-TATAGAAACCCCCGAAGCTTAGTTTCTT-AAATCTCATTTAA
1 GATGGCCCGAAGGACTTACAAATTA-AGAAACCCCCGAGGCTTAGTTTCTTAAAATCTCATTTGA
*
179930 AAACATCCTACACTGAAGGTCTTAT-
65 AAACATCCTGCACTGAAGGTCTTATG
179955 G-T--CCCGAAGGACTTAC
1 GATGGCCCGAAGGACTTAC
179971 GCATCATGCT
Statistics
Matches: 168, Mismatches: 18, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
84 8 0.05
85 5 0.03
86 1 0.01
87 30 0.18
88 34 0.20
89 27 0.16
90 63 0.38
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATTAAGAAACCCCCGAGGCTTAGTTTCTTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:180074 original size:128 final size:128
Alignment explanation
Indices: 179868--180212 Score: 446
Period size: 131 Copynumber: 2.7 Consensus size: 128
179858 AAGGTTTTTG
* * *
179868 GATGGCCCGAAGG-CTTACAAATATAGAAACCCCCGAAGCTTAGTTTCTTAAATCTCATTTAAAA
1 GATGGCCCGGAGGACTTACAAATAAAGAAACCCCCGAAGCTTAGTTTC-TAAATCTCATTTGAAA
* * *
179932 ACATCCTACACTGAAGGTCTTAT-G-T-CCCGAAGGACTTACGCATCATGCTCGAAAGACTTAAT
65 ACATCCTGCACTGAAGGTCTTATGGATACCCGAAAGACTTACGCATCATGCTC-AAACACTTAAT
* * *
179994 GATGGCCCGGAGGACTTAAAAATAAAGAAACCCCTGAAGACTTCGTTTCTAATATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATAAAGAAACCCCCGAAG-CTTAGTTTCTAA-ATCTCATTTGAA
* * * *
180059 AGCATCCTGCGCTGAAGGTCTTATGGATGACCCGAAAGTCTTACGCATCATGCTCAAACACTTAC
64 AACATCCTGCACTGAAGGTCTTATGGAT-ACCCGAAAGACTTACGCATCATGCTCAAACACTTAA
180124 T
128 T
* * *
180125 GATGTCCCGGAGGACTTACAATTCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATAAAGAAACCCCCGAA-GCTTAGTTTCT-AAATCTCATTTGAA
*
180190 AACGTCCTGCACTGAAGGTCTTA
64 AACATCCTGCACTGAAGGTCTTA
180213 CAAATCAAGA
Statistics
Matches: 188, Mismatches: 22, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
126 12 0.06
127 25 0.13
128 40 0.21
129 1 0.01
130 1 0.01
131 83 0.44
132 26 0.14
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (128 bp):
GATGGCCCGGAGGACTTACAAATAAAGAAACCCCCGAAGCTTAGTTTCTAAATCTCATTTGAAAA
CATCCTGCACTGAAGGTCTTATGGATACCCGAAAGACTTACGCATCATGCTCAAACACTTAAT
Found at i:180251 original size:69 final size:70
Alignment explanation
Indices: 180139--180281 Score: 252
Period size: 69 Copynumber: 2.1 Consensus size: 70
180129 TCCCGGAGGA
* *
180139 CTTACAATTCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACGTCCTGCACTG
1 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTG
180204 AAGGT
66 AAGGT
*
180209 CTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTG
1 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTG
180273 AAGGT
66 AAGGT
180278 CTTA
1 CTTA
180282 TGGATGACCC
Statistics
Matches: 70, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
69 55 0.79
70 15 0.21
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.28
Consensus pattern (70 bp):
CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTG
AAGGT
Found at i:180484 original size:90 final size:90
Alignment explanation
Indices: 180203--180658 Score: 648
Period size: 90 Copynumber: 5.2 Consensus size: 90
180193 GTCCTGCACT
*
180203 GAAGGTCTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCT
1 GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCT
*
180267 GCACTGAAGGTCTTATGGATGACCC
66 GCACTGAAGGTCTTATGGATGGCCC
*
180292 GAAGGACTTACAAATC-AGAAA-CCACG-AGGCTTAGTTTCTTAAATCTCATTTGAAAAC-TCCT
1 GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCT
* *
180353 ACACTGAAGGTCTTATGGATGGTCC
66 GCACTGAAGGTCTTATGGATGGCCC
*
180378 GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATTCT
1 GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCT
* * *
180443 GCACTGAATGTCTTAGGGATGGCTC
66 GCACTGAAGGTCTTATGGATGGCCC
* * * *
180468 GAAGAACTTTCAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAAATTTCATTTGAAAACATCC
1 GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCC
* * *
180533 TACATTGAAGGTCTTATAGATGGCCC
65 TGCACTGAAGGTCTTATGGATGGCCC
* * *
180559 GAATGACTTAAAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATGCT
1 GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCT
180624 GCACTG-A------ATGGATGGCCC
66 GCACTGAAGGTCTTATGGATGGCCC
180642 GAAGGACTTACAAATCA
1 GAAGGACTTACAAATCA
180659 TGCTCGAAAG
Statistics
Matches: 327, Mismatches: 35, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
83 25 0.08
86 42 0.13
87 36 0.11
88 13 0.04
89 47 0.14
90 87 0.27
91 77 0.24
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (90 bp):
GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCT
GCACTGAAGGTCTTATGGATGGCCC
Found at i:180606 original size:181 final size:176
Alignment explanation
Indices: 180203--180633 Score: 666
Period size: 181 Copynumber: 2.4 Consensus size: 176
180193 GTCCTGCACT
*
180203 GAAGGTCTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCT
1 GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCT
* * *
180267 GCACTGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAGAAACCACGAGGCTTAGTTTCTT
66 GCACTGAATGTCTTAGGGATGACCCGAAGAACTTACAAATCAGAAACCACGAGGCTTAGTTTCTT
* *
180332 AAATCTCATTTGAAAACTCCTACACTGAAGGTCTTATGGATGGTCC
131 AAATCTCATTTGAAAACTCCTACACTGAAGGTCTTATAGATGGCCC
*
180378 GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATTCT
1 GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCT
* * * *
180443 GCACTGAATGTCTTAGGGATGGCTCGAAGAACTTTCAAATCAAGAAACCCCTGAAGGCTTAGTTT
66 GCACTGAATGTCTTAGGGATGACCCGAAGAACTTACAAATC-AGAAACCAC-G-AGGCTTAGTTT
* *
180508 CTTAAAATTTCATTTGAAAACATCCTACATTGAAGGTCTTATAGATGGCCC
128 CTT-AAATCTCATTTGAAAAC-TCCTACACTGAAGGTCTTATAGATGGCCC
* * *
180559 GAATGACTTAAAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATGCT
1 GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCT
180624 GCACTGAATG
66 GCACTGAATG
180634 GATGGCCCGA
Statistics
Matches: 234, Mismatches: 16, Indels: 6
0.91 0.06 0.02
Matches are distributed among these distances:
175 21 0.09
176 76 0.32
177 8 0.03
178 1 0.00
179 14 0.06
180 16 0.07
181 98 0.42
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (176 bp):
GAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCT
GCACTGAATGTCTTAGGGATGACCCGAAGAACTTACAAATCAGAAACCACGAGGCTTAGTTTCTT
AAATCTCATTTGAAAACTCCTACACTGAAGGTCTTATAGATGGCCC
Found at i:180852 original size:90 final size:91
Alignment explanation
Indices: 180676--180963 Score: 431
Period size: 90 Copynumber: 3.2 Consensus size: 91
180666 AAGACTTACT
* * *
180676 GATGGCCCGGAGGACTTACAAATCAAGAAAACCCCGAAGGCTTAGTTTC-TAAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
180740 AAACATCCTGCACTGAAGGTCTTATG
66 AAACATCCTGCACTGAAGGTCTTATG
* * *
180766 GATGACCCGAAGGACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* * *
180831 AAACATCATGCAC-GTATGTCTTATG
66 AAACATCCTGCACTGAAGGTCTTATG
*
180856 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAG-TTCTT-AAATCTCATTTAA
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
*
180919 AAACATCCTACACTGAAGGTCTTATG
66 AAACATCCTGCACTGAAGGTCTTATG
* *
180945 GTTGGCCTGAAGGACTTAC
1 GATGGCCCGAAGGACTTAC
180964 GCATCATGCT
Statistics
Matches: 178, Mismatches: 18, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
88 22 0.12
89 32 0.18
90 98 0.55
91 26 0.15
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.26
Consensus pattern (91 bp):
GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
AAACATCCTGCACTGAAGGTCTTATG
Found at i:181090 original size:132 final size:132
Alignment explanation
Indices: 180856--181359 Score: 794
Period size: 132 Copynumber: 3.8 Consensus size: 132
180846 ATGTCTTATG
* *
180856 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAG-TTCTTAAATCTCATTTAAA
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
180920 AACATCCTACACTGAAGGTCTTATGGTTGGCCTGAAGGACTTACGCATCATGCTCGAAAGACTAA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
*
180985 AT
131 CT
* * **
180987 GATGGCCCGAAGGACTTAGAAATCAAGAAACCCTTGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
181052 AACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACATACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
181117 CT
131 CT
* * * *
181119 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
181184 AGCATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGTCTTAAGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
181249 CT
131 CT
* *
181251 GATGGCCCGGAGGACTTACAAATAAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
181316 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
181360 AAATCAAGAA
Statistics
Matches: 340, Mismatches: 32, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
131 41 0.12
132 299 0.88
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.25
Consensus pattern (132 bp):
GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
CT
Found at i:181404 original size:90 final size:90
Alignment explanation
Indices: 181251--182170 Score: 1404
Period size: 90 Copynumber: 10.3 Consensus size: 90
181241 AAGACTTACT
* * * *
181251 GATGGCCCGGAGGACTTACAAATAAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
181316 AATATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
181341 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
181406 AACATCATGCACTGAAGGTCTTATA
66 AACATCCTGCACTGAAGGTCTTATG
* *
181431 GATGGCCTGAAGGACTTACAAATCAAGAAACCCTCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
181496 AACATCCTGCACTGAGGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * *
181521 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGATGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
181586 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * * *
181611 GATGACCCGAAGGACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTTATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* * *
181676 AAACATCATGCACGGAAGATCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
*
181702 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
181767 AACATCCTGCACTAAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * *
181792 GATGACCCGAAGGACTTACAAATCAAGAAACACACGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
181857 AACATCCTACACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
181882 GATGGTCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * *
181947 AACATTCTGCACTGAATGTCTTAGG
66 AACATCCTGCACTGAAGGTCTTATG
* * * * *
181972 GATGGCTCGAAGAACTTTCAAATCAAGAAACCCCTGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* * *
182037 AAACATCCTACATTGAAGGTCTTATA
65 AAACATCCTGCACTGAAGGTCTTATG
* *
182063 GATGGCCCGAATGACTTAAAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
182128 AACATGCTGCACTG-A------ATG
66 AACATCCTGCACTGAAGGTCTTATG
182146 GATGGCCCGAAGGACTTACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
182171 TGCTCGAAAG
Statistics
Matches: 753, Mismatches: 75, Indels: 11
0.90 0.09 0.01
Matches are distributed among these distances:
83 25 0.03
89 1 0.00
90 567 0.75
91 160 0.21
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:182372 original size:91 final size:91
Alignment explanation
Indices: 182188--182477 Score: 442
Period size: 90 Copynumber: 3.2 Consensus size: 91
182178 AAGACTTACT
* * *
182188 GATGGCCCGGAGGACTTACAAATCAAGAAAACCCCGAAGGCTTAGTTTC-TAAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
182252 AAACATCCTGCACTGAAGGTCTTATG
66 AAACATCCTGCACTGAAGGTCTTATG
* * *
182278 GATGACCCGAAGGACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTCATTTGA
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* *
182343 AAACATCATGCAC-GTAATGTCTTATG
66 AAACATCCTGCACTG-AAGGTCTTATG
*
182369 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTAA
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
*
182433 AAACATCCTACACTGAAGGTCTTATG
66 AAACATCCTGCACTGAAGGTCTTATG
* *
182459 GTTGGCCTGAAGGACTTAC
1 GATGGCCCGAAGGACTTAC
182478 GCATCATGCT
Statistics
Matches: 181, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
90 95 0.52
91 86 0.48
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (91 bp):
GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
AAACATCCTGCACTGAAGGTCTTATG
Found at i:182611 original size:132 final size:132
Alignment explanation
Indices: 182369--182873 Score: 803
Period size: 132 Copynumber: 3.8 Consensus size: 132
182359 ATGTCTTATG
* *
182369 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAA
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
182434 AACATCCTACACTGAAGGTCTTATGGTTGGCCTGAAGGACTTACGCATCATGCTCGAAAGACTAA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
*
182499 AT
131 CT
* * **
182501 GATGGCCCGAAGGACTTAGAAATCAAGAAACCCTTGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* *
182566 AACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACATACGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
182631 CT
131 CT
* * * *
182633 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
182698 AGCATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGTCTTAAGCATCATGCTCGAAAGACTTA
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
182763 CT
131 CT
* *
182765 GATGGCCCGGAGGACTTACAAATAAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
182830 AATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
182874 AAATCAAGAA
Statistics
Matches: 341, Mismatches: 32, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
132 341 1.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (132 bp):
GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
CT
Found at i:182918 original size:90 final size:90
Alignment explanation
Indices: 182765--184126 Score: 1550
Period size: 90 Copynumber: 15.3 Consensus size: 90
182755 AAGACTTACT
* * * *
182765 GATGGCCCGGAGGACTTACAAATAAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
182830 AATATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
182855 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
182920 AACATCATGCACTGAAGGTCTTATA
66 AACATCCTGCACTGAAGGTCTTATG
* *
182945 GATGGCCTGAAGGACTTACAAATCAAGAAACCCTCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
183010 AACATCCTGCACTGAGGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * *
183035 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGATGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
183100 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* * * *
183125 GATGACCCGAAGGACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATTTTATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGA
* * *
183190 AAACATCATGCACGGAAGATCTTATG
65 AAACATCCTGCACTGAAGGTCTTATG
* *
183216 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
183281 AACATCCTACACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* ** * * ** * ** **
183306 GTTGGCCCGAAGGACTTACGCATCATG----CTCAAAAGACTTAAGGATGGCCCGAAGGA-CTTA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTT-A-G-T-TTCTTAA--ATC-T-
** * * *
183366 CAAATCAAGAA-A-CC--C-CCGAA-GACTT-T-
58 CATTTGAA-AACATCCTGCACTGAAGGTCTTATG
** * * ** * * * * * ** **
183392 G-T--TTCTAA--AATCT-CATTTGAAAGCATCCTGTGCTGAAGGTCTTATGGATGACCCGAAA-
1 GATGGCCCGAAGGACT-TACAAAT-CAAGAAACC---CCCGAAGG-CTTA--G-T-TTCTTAAAT
* ** * * * *
183450 GTC--TT--ACGCATCATGCTC-GAAAGACTTACT-
56 CTCATTTGAAAACATCCTGCACTGAAGGTCTTA-TG
* * * * * * *
183480 GATGGCCTGGAGGACTTACAAATAAAGAAACTCTCGAATGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
183545 AACATCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
183570 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
183635 AACATCCTGCACTGAGGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
* *
183660 GATGGCCCGAAGGACTTACAAGTCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
183725 AACGTCCTGCACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
183750 GATGGCCCGAAGGACTTACAAATCAAGAAA-CCCCGAAGGTTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
183814 AACATCCTGCACTGAAGGTCTTATT
66 AACATCCTGCACTGAAGGTCTTATG
* *
183839 GATGGCCCGAAGGACTTACAAATCAAGAAACACACGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
183904 AACATCATACACTGAAGGTCTTATG
66 AACATCCTGCACTGAAGGTCTTATG
*
183929 GATGGTCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
183994 AACATCCTTCACTGAAGGTCTTATA
66 AACATCCTGCACTGAAGGTCTTATG
184019 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
184084 AACATGCTGCACTG-A------ATG
66 AACATCCTGCACTGAAGGTCTTATG
184102 GATGGCCCGAAGGACTTACAAATCA
1 GATGGCCCGAAGGACTTACAAATCA
184127 TGCTCGAAAG
Statistics
Matches: 1096, Mismatches: 133, Indels: 93
0.83 0.10 0.07
Matches are distributed among these distances:
81 4 0.00
82 5 0.00
83 31 0.03
84 5 0.00
85 8 0.01
86 18 0.02
87 5 0.00
88 12 0.01
89 111 0.10
90 788 0.72
91 85 0.08
92 11 0.01
93 11 0.01
94 2 0.00
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (90 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATG
Found at i:183041 original size:847 final size:866
Alignment explanation
Indices: 182188--184088 Score: 2833
Period size: 847 Copynumber: 2.2 Consensus size: 866
182178 AAGACTTACT
*
182188 GATGGCCCGGAGGACTTACAAATCAAGAAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
182253 AACATCCTGCACTGAAGGTCTTATGGATGACCCGAAGGACTTACAAATTAAGAAACCCCCGAAGG
66 AACATCCTGCACTGAAGGTCTTATGGATGACCCGAAGGACTTACAAATTAAGAAACCCCCGAAGG
*
182318 CTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACGTAATG-TCTTATGGATGGCCCGAAGG
131 CTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACGGAA-GATCTTATGGATGGCCCGAAGG
182382 ACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATCCTACACT
195 ACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATCCTACACT
* * *
182447 GAAGGTCTTATGGTTGGCCTGAAGGACTTACGCATCATGCTCGAAAGACTAAATGATGGCCCGAA
260 GAAGGTCTTATGGTTGGCCCGAAGGACTTACGCATCATGCTCAAAAGACTAAAGGATGGCCCGAA
* ** *
182512 GGACTTAGAAATCAAGAAACCCTTGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGCA
325 GGACTTACAAATCAAGAAACCCCCGAAGACTTAGTTTCTAAAATCTCATTTGAAAACATCATGCA
* *
182577 CTGAAGGTCTTATGGATGGCCCGAAGGACATACGCATCATGCTCGAAAGACTTACTGATGGCCCG
390 CTGAAGGTCTTATGGATGACCCGAAAGACATACGCATCATGCTCGAAAGACTTACTGATGGCCCG
* * *
182642 GAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTTAAATCTCATTTGAAAGCATCCTG
455 GAGGACTTACAAATAAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTG
* * * * *
182707 CACTGAAGGTCTTATGGATGGCCCGAAGGTCTTA-AGCATCATG-CTCGAA-AG-ACTT-A-CTG
520 CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACA-AATCAAGACCCGAAGAGTACTTAATCTC
* *
182766 A-TG-GC-CC-G-GA-GGAC-T-T-A-C-AA-A-T-A-AAGAAACCCCCGAATGCTTAGTTTCTA
584 ATTGAACACCTGCGAGGGACTTATGACCGAAGACTAACAAGAAACCCCCGAAGGCTTAGTTTCTA
*
182816 AAATCTCATTTGAAAATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAA
649 AAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAA
182881 GAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTATAG
714 GAAA-CCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTATAG
* * *
182946 ATGGCCTGAAGGACTTACAAATCAAGAAACCCTCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
778 ATGGCCCGAAGGACTTACAAATCAAGAAACACACGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
* * *
183011 ACATCCTGCACTGAGGGTCTTATG
843 ACATCATACACTGAAGGTCTTATG
*
183035 GATGGCCCGAAGGACTTACAAATCAAG-AAACCCCTGATGGCTTAGTTTCTAAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATCAAGAAAACCCC-GAAGGCTTAGTTTCTAAAATCTCATTTGA
183099 AAACATCCTGCACTGAAGGTCTTATGGATGACCCGAAGGACTTACAAATTAAGAAACCCCCGAAG
65 AAACATCCTGCACTGAAGGTCTTATGGATGACCCGAAGGACTTACAAATTAAGAAACCCCCGAAG
*
183164 GCTTAGTTTCTTAAAATTTTATTTGAAAACATCATGCACGGAAGATCTTATGGATGGCCCGAAGG
130 GCTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACGGAAGATCTTATGGATGGCCCGAAGG
183229 ACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATCCTACACT
195 ACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATCCTACACT
*
183294 GAAGGTCTTATGGTTGGCCCGAAGGACTTACGCATCATGCTCAAAAGACTTAAGGATGGCCCGAA
260 GAAGGTCTTATGGTTGGCCCGAAGGACTTACGCATCATGCTCAAAAGACTAAAGGATGGCCCGAA
* * * **
183359 GGACTTACAAATCAAGAAACCCCCGAAGACTTTGTTTCTAAAATCTCATTTGAAAGCATCCTGTG
325 GGACTTACAAATCAAGAAACCCCCGAAGACTTAGTTTCTAAAATCTCATTTGAAAACATCATGCA
* * *
183424 CTGAAGGTCTTATGGATGACCCGAAAGTCTTACGCATCATGCTCGAAAGACTTACTGATGGCCTG
390 CTGAAGGTCTTATGGATGACCCGAAAGACATACGCATCATGCTCGAAAGACTTACTGATGGCCCG
* * * *
183489 GAGGACTTACAAATAAAGAAACTCTCGAATGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTG
455 GAGGACTTACAAATAAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTG
*
183554 CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC
520 CACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAG--A--CCCGAA-G---AG-TAC
*
183619 TTAAATCTCATTTGAAAACATCCTGCACTGAGGGTCTTATGGATGGCCCGAAGGACTTACAAGTC
576 TT-AATCTCA-TTG--AACA-CCTG--C-GAGGGACTTAT-GA----CCGAA-GAC-T--AA--C
*
183684 AAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACGTCCTGCACTGAAGGTCTTAT
622 AAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTAT
*
183749 GGATGGCCCGAAGGACTTACAAATCAAGAAACCCCGAAGGTTTAGTTTCTTAAATCTCATTTGAA
687 GGATGGCCCGAAGGACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
183814 AACATCCTGCACTGAAGGTCTTATTGATGGCCCGAAGGACTTACAAATCAAGAAACACACGAAGG
752 AACATCATGCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACACACGAAGG
183879 CTTAGTTTCTTAAATCTCATTTGAAAACATCATACACTGAAGGTCTTATG
817 CTTAGTTTCTTAAATCTCATTTGAAAACATCATACACTGAAGGTCTTATG
* * *
183929 GATGGTCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * * *
183994 AACATCCTTCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
66 AACATCCTGCACTGAAGGTCTTATGGATGACCCGAAGGACTTACAAATTAAGAAACCCCCGAAGG
*
184059 CTTAGTTTCTT-AAATCTCATTTGAAAACAT
131 CTTAGTTTCTTAAAATTTCATTTGAAAACAT
184089 GCTGCACTGA
Statistics
Matches: 943, Mismatches: 59, Indels: 58
0.89 0.06 0.05
Matches are distributed among these distances:
846 8 0.01
847 518 0.55
848 1 0.00
852 5 0.01
857 2 0.00
859 3 0.00
861 1 0.00
862 3 0.00
864 2 0.00
867 1 0.00
869 2 0.00
870 1 0.00
874 2 0.00
875 3 0.00
876 1 0.00
877 1 0.00
879 1 0.00
884 1 0.00
885 2 0.00
887 1 0.00
889 1 0.00
892 1 0.00
893 17 0.02
894 266 0.28
895 99 0.10
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (866 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAAACCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGACCCGAAGGACTTACAAATTAAGAAACCCCCGAAGG
CTTAGTTTCTTAAAATTTCATTTGAAAACATCATGCACGGAAGATCTTATGGATGGCCCGAAGGA
CTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATCCTACACTG
AAGGTCTTATGGTTGGCCCGAAGGACTTACGCATCATGCTCAAAAGACTAAAGGATGGCCCGAAG
GACTTACAAATCAAGAAACCCCCGAAGACTTAGTTTCTAAAATCTCATTTGAAAACATCATGCAC
TGAAGGTCTTATGGATGACCCGAAAGACATACGCATCATGCTCGAAAGACTTACTGATGGCCCGG
AGGACTTACAAATAAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGC
ACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGACCCGAAGAGTACTTAATCTCAT
TGAACACCTGCGAGGGACTTATGACCGAAGACTAACAAGAAACCCCCGAAGGCTTAGTTTCTAAA
ATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGA
AACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTATAGATG
GCCCGAAGGACTTACAAATCAAGAAACACACGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACA
TCATACACTGAAGGTCTTATG
Found at i:183420 original size:715 final size:713
Alignment explanation
Indices: 182501--184037 Score: 2588
Period size: 715 Copynumber: 2.2 Consensus size: 713
182491 AAGACTAAAT
* ** *
182501 GATGGCCCGAAGGACTTAGAAATCAAGAAACCCTTGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* * * *
182566 AACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACATACGCATCATGCTCGAAAGACTTA
66 AACATCCTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCAAAAGACTTA
** * * *
182631 CTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTTAAATCTCATTTG
131 AGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCAAAGACTTAGTTTCTAAAATCTCATTTG
* *
182696 AAAGCATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGTCTTAAGCATCATGCTCGAAAGACT
196 AAAGCATCCTGCACTGAAGGTCTTATGGATGACCCGAAAGTCTTAAGCATCATGCTCGAAAGACT
182761 TACTGATGGCCCGGAGGACTTACAAATAAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATT
261 TACTGATGGCCCGGAGGACTTACAAATAAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATT
*
182826 TGAAAATATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCG
326 TGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCG
*
182891 AAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTATAGATGGCCTGAA
391 AAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTATAGATGGCCCGAA
* *
182956 GGACTTACAAATCAAGAAACCCTCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCA
456 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCA
* *
183021 CTGAGGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCTGATGGCTTAGTTTCTA
521 CTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCC-GAAGGCTTAGTTTCTA
*
183086 AAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGACCCGAAGGACTTACAAATTAA
585 AAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAA
* * * * *
183151 GAAACCCCCGAAGGCTTAGTTTCTTAAAATTTTATTTGAAAACATCATGCACGGAAGATCTTATG
650 GAAACACACGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCATACACGGAAGATCTTATG
* *
183216 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
183281 AACATCCTACACTGAAGGTCTTATGGTTGGCCCGAAGGACTTACGCATCATGCTCAAAAGACTTA
66 AACATCCTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCAAAAGACTTA
* *
183346 AGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGACTTTGTTTCTAAAATCTCATTTG
131 AGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCAAAGACTTAGTTTCTAAAATCTCATTTG
** *
183411 AAAGCATCCTGTGCTGAAGGTCTTATGGATGACCCGAAAGTCTTACGCATCATGCTCGAAAGACT
196 AAAGCATCCTGCACTGAAGGTCTTATGGATGACCCGAAAGTCTTAAGCATCATGCTCGAAAGACT
* * *
183476 TACTGATGGCCTGGAGGACTTACAAATAAAGAAACTCTCGAATGCTTAGTTTCTAAAATCTCATT
261 TACTGATGGCCCGGAGGACTTACAAATAAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATT
183541 TGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCG
326 TGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCG
* * *
183606 AAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAGGGTCTTATGGATGGCCCGAA
391 AAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTATAGATGGCCCGAA
* *
183671 GGACTTACAAGTCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACGTCCTGCA
456 GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCA
* *
183736 CTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCGAAGGTTTAGTTTCTTA
521 CTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTAA
* *
183801 AATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATTGATGGCCCGAAGGACTTACAAATCAAG
586 AATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAG
* *
183866 AAACACACGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCATACACTGAAGGTCTTATG
651 AAACACACGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCATACACGGAAGATCTTATG
*
183929 GATGGTCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
183994 AACATCCTTCACTGAAGGTCTTATAGATGGCCCGAAGGACTTAC
66 AACATCCTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
184038 AAATCAAGAA
Statistics
Matches: 767, Mismatches: 55, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
713 137 0.18
714 98 0.13
715 532 0.69
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (713 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
AACATCCTACACTGAAGGTCTTATGGATGGCCCGAAGGACTTACGCATCATGCTCAAAAGACTTA
AGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCAAAGACTTAGTTTCTAAAATCTCATTTG
AAAGCATCCTGCACTGAAGGTCTTATGGATGACCCGAAAGTCTTAAGCATCATGCTCGAAAGACT
TACTGATGGCCCGGAGGACTTACAAATAAAGAAACCCCCGAATGCTTAGTTTCTAAAATCTCATT
TGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCG
AAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCATGCACTGAAGGTCTTATAGATGGCCCGAA
GGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCA
CTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTAA
AATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGACCCGAAGGACTTACAAATCAAG
AAACACACGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCATACACGGAAGATCTTATG
Found at i:183456 original size:132 final size:131
Alignment explanation
Indices: 183205--183588 Score: 543
Period size: 132 Copynumber: 2.9 Consensus size: 131
183195 TCATGCACGG
* *
183205 AAGATCTTATGGATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAA
1 AAGA-CTTAAGGATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAA-GCTTAGTTTCTAAAA
* * * *
183270 TCTCATTTAAAAACATCCTACACTGAAGGTCTTATGGTTGGCCCGAAGGACTTACGCATCATGCT
64 TCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAAGACTTACGCATCATGCT
183335 CAA
129 CAA
* *
183338 AAGACTTAAGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGACTTTGTTTCTAAAAT
1 AAGACTTAAGGATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAG-CTTAGTTTCTAAAAT
* ** * *
183403 CTCATTTGAAAGCATCCTGTGCTGAAGGTCTTATGGATGACCCGAAAGTCTTACGCATCATGCTC
65 CTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAAGACTTACGCATCATGCTC
*
183468 GA
130 AA
** * * * *
183470 AAGACTTACTGATGGCCTGGAGGACTTACAAATAAAGAAACTCTCGAATGCTTAGTTTCTAAAAT
1 AAGACTTAAGGATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAA-GCTTAGTTTCTAAAAT
*
183535 CTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAC
65 CTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAAGACTTAC
183589 AAATCAAGAA
Statistics
Matches: 221, Mismatches: 28, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
131 1 0.00
132 215 0.97
133 5 0.02
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.26
Consensus pattern (131 bp):
AAGACTTAAGGATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGCTTAGTTTCTAAAATC
TCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAAGACTTACGCATCATGCTCA
A
Found at i:183748 original size:625 final size:631
Alignment explanation
Indices: 182855--184433 Score: 2054
Period size: 625 Copynumber: 2.5 Consensus size: 631
182845 AGGTCTTATG
* *
182855 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
182920 AACATCATGCACTGAAGGTCTTATAGATGGCCTGAAGGACTTACAAATCAAGAAACCCTCGAAGG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCTGAAGGACTTACAAATCAAGAAACCCCCGAAGG
182985 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAGGGTCTTATGGATGGCCCGAAGGAC
131 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAGGGTCTTATGGATGGCCCGAAGGAC
* *
183050 TTACAAATCAAGAAACCCCTGATGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGA
196 TTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGA
* *
183115 AGGTCTTATGGATGACCCGAAGGACTTACAAATTAAGAAACCCCCGAAGGCTTAGTTTCTTAAAA
261 AGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTT-AAA
* *
183180 TTTTATTTGAAAACATCATGCACGGAAGATCTTATGGATGGCCCGAAGGACTTACAAATAAAGAA
324 TCTCATTTGAAAACATCATGCACGGAAGATCTTATGGATGGCCCGAAGGACTTACAAATAAAGAA
* * * *
183245 ACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATCCTACACTGAAGGTCTTATGGTTG
389 ACACACGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATCATACACTGAAGGTCTTATGGATG
** * * * *
183310 GCCCGAAGGACTTACGCATCATG-CTC-AA-AAG-ACTT-AA-GGA-TG-GC-C-C-GAAGGACT
454 GCCCGAAGGACTTACAAATCAAGACCCGAAGAAGTACTTAAACGCATTGACCTCACTGAAGGACT
* * **
183364 TACAAAT-C-AA-G-AAACCCCCGAAGACTTTGTTTCTAAAATCTCATTTGAAAGCATCCTGTGC
519 TACAAATCCGAAGGAAAACCCCCGAAGACTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCAC
* **
183425 TGAAGGTCTTATGGATGACCCGAAAGTCTTACGCATCATGCTCGAAAGACTTACT
584 TG-A------ATGGATGACCCGAAAGACTTACAAATCATGCTCGAAAGACTTACT
* * * * *
183480 GATGGCCTGGAGGACTTACAAATAAAGAAACTCTCGAATGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
*
183545 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCTGAAGGACTTACAAATCAAGAAACCCCCGAAGG
183610 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAGGGTCTTATGGATGGCCCGAAGGAC
131 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAGGGTCTTATGGATGGCCCGAAGGAC
* *
183675 TTACAAGTCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACGTCCTGCACTGA
196 TTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGA
*
183740 AGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCGAAGGTTTAGTTTCTTAAATC
261 AGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTTAAATC
* * * * *
183805 TCATTTGAAAACATCCTGCACTGAAGGTCTTATTGATGGCCCGAAGGACTTACAAATCAAGAAAC
326 TCATTTGAAAACATCATGCACGGAAGATCTTATGGATGGCCCGAAGGACTTACAAATAAAGAAAC
* *
183870 ACACGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCATACACTGAAGGTCTTATGGATGGT
391 ACACGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATCATACACTGAAGGTCTTATGGATGGC
* * *
183935 CCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATC
456 CCGAAGGACTTACAAATCAAG--A--CCCGAA-G--AAG-TACTTAAA-CGCA-TTG-----A-C
* * * *
184000 CTTCACTGAAGGTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGT
505 C-TCACTGAAGGACTTACAAAT---CCGAAGG------------A-AAACCCCCGAAGACTTAGT
* * * *
184065 TTCTTAAATCTCATTTGAAAACATGCTGCACTGAATGGATGGCCCGAAGGACTTACAAATCATGC
553 TTCTAAAATCTCATTTGAAAACATCCTGCACTGAATGGATGACCCGAAAGACTTACAAATCATGC
184130 TCGAAAGACTTACT
618 TCGAAAGACTTACT
184144 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
* * *
184209 AACATCCTGCACTGAAGGTCTTATGGATGACCTGAAGGACTTACAAATTAAGAAACCCCGGAAGG
66 AACATCCTGCACTGAAGGTCTTATGGATGGCCTGAAGGACTTACAAATCAAGAAACCCCCGAAGG
* * * * *
184274 CTTAGTTTCTTAAAATTTTATTTGAAAACATCATGCACGGAAGGTCTTATGGATGGCCCGAAGGA
131 CTTAGTTTCTT-AAATCTCATTTGAAAACATCCTGCACTGAGGGTCTTATGGATGGCCCGAAGGA
* * * *
184339 CTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATCCTACACTG
195 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTG
*
184404 AAGGTCTTATGGTTGGCCCGAAGGACTTAC
260 AAGGTCTTATGGATGGCCCGAAGGACTTAC
184434 GCATCATGCT
Statistics
Matches: 829, Mismatches: 76, Indels: 58
0.86 0.08 0.06
Matches are distributed among these distances:
623 140 0.17
624 19 0.02
625 283 0.34
628 2 0.00
629 2 0.00
633 2 0.00
635 3 0.00
636 2 0.00
638 1 0.00
640 2 0.00
647 1 0.00
649 1 0.00
650 1 0.00
651 12 0.01
655 1 0.00
656 2 0.00
657 1 0.00
664 172 0.21
665 136 0.16
670 1 0.00
671 45 0.05
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (631 bp):
GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
AACATCCTGCACTGAAGGTCTTATGGATGGCCTGAAGGACTTACAAATCAAGAAACCCCCGAAGG
CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAGGGTCTTATGGATGGCCCGAAGGAC
TTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGA
AGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTTAAATC
TCATTTGAAAACATCATGCACGGAAGATCTTATGGATGGCCCGAAGGACTTACAAATAAAGAAAC
ACACGAAGGCTTAGTTTCTTAAATCTCATTTAAAAACATCATACACTGAAGGTCTTATGGATGGC
CCGAAGGACTTACAAATCAAGACCCGAAGAAGTACTTAAACGCATTGACCTCACTGAAGGACTTA
CAAATCCGAAGGAAAACCCCCGAAGACTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTG
AATGGATGACCCGAAAGACTTACAAATCATGCTCGAAAGACTTACT
Found at i:184009 original size:269 final size:269
Alignment explanation
Indices: 183480--184126 Score: 1047
Period size: 269 Copynumber: 2.4 Consensus size: 269
183470 AAGACTTACT
* * * * * *
183480 GATGGCCTGGAGGACTTACAAATAAAGAAACTCTCGAATGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAAC-CCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
* *
183545 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGG
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACACACGAAGG
* * *
183610 CTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAGGGTCTTATGGATGGCCCGAAGGAC
130 CTTAGTTTCTTAAATCTCATTTGAAAACATCATACACTGAAGGTCTTATGGATGGCCCGAAGGAC
* *
183675 TTACAAGTCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACGTCCTGCACTGA
195 TTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGA
*
183740 AGGTCTTATG
260 AGGTCTTATA
*
183750 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCGAAGGTTTAGTTTCTTAAATCTCATTTGAAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
*
183815 ACATCCTGCACTGAAGGTCTTATTGATGGCCCGAAGGACTTACAAATCAAGAAACACACGAAGGC
66 ACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACACACGAAGGC
*
183880 TTAGTTTCTTAAATCTCATTTGAAAACATCATACACTGAAGGTCTTATGGATGGTCCGAAGGACT
131 TTAGTTTCTTAAATCTCATTTGAAAACATCATACACTGAAGGTCTTATGGATGGCCCGAAGGACT
* *
183945 TACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTTCACTGAA
196 TACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAA
184010 GGTCTTATA
261 GGTCTTATA
184019 GATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
1 GATGGCCCGAAGGACTTACAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAA
*
184084 AACATGCTGCACTG-A------ATGGATGGCCCGAAGGACTTACAAATCA
65 AACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCA
184127 TGCTCGAAAG
Statistics
Matches: 354, Mismatches: 22, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
263 27 0.08
269 253 0.71
270 74 0.21
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (269 bp):
GATGGCCCGAAGGACTTACAAATCAAGAAACCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAA
ACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACACACGAAGGC
TTAGTTTCTTAAATCTCATTTGAAAACATCATACACTGAAGGTCTTATGGATGGCCCGAAGGACT
TACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAA
GGTCTTATA
Found at i:184326 original size:91 final size:91
Alignment explanation
Indices: 184144--184433 Score: 449
Period size: 90 Copynumber: 3.2 Consensus size: 91
184134 AAGACTTACT
* *
184144 GATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTC-TAAAATCTCATTTGA
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
184208 AAACATCCTGCACTGAAGGTCTTATG
66 AAACATCCTGCACTGAAGGTCTTATG
* * * * * *
184234 GATGACCTGAAGGACTTACAAATTAAGAAACCCCGGAAGGCTTAGTTTCTTAAAATTTTATTTGA
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
* *
184299 AAACATCATGCACGGAAGGTCTTATG
66 AAACATCCTGCACTGAAGGTCTTATG
*
184325 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTAA
1 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
*
184389 AAACATCCTACACTGAAGGTCTTATG
66 AAACATCCTGCACTGAAGGTCTTATG
*
184415 GTTGGCCCGAAGGACTTAC
1 GATGGCCCGAAGGACTTAC
184434 GCATCATGCT
Statistics
Matches: 179, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
90 95 0.53
91 84 0.47
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (91 bp):
GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAAATCTCATTTGA
AAACATCCTGCACTGAAGGTCTTATG
Found at i:184507 original size:305 final size:299
Alignment explanation
Indices: 183881--184545 Score: 940
Period size: 305 Copynumber: 2.2 Consensus size: 299
183871 CACGAAGGCT
* * * *
183881 TAGTTTCTTAAATCTCATTTGAAAACATCATACACTGAAGGTCTTATGGATGGTCCGAAGGACTT
1 TAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGAT-GACCGAAGGACTT
* * *
183946 ACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTTCACTGAAG
65 ACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCATGCACGGAAG
*
184011 GTCTTATAGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCT
130 GTCTTATAGATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCT
* * *
184076 CATTTGAAAACATGCTGCACTGAATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTT
195 CATTTAAAAACATCCTACACTGAATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTT
* * *
184141 ACTGATGGCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGG
260 AATGATGGCCCGGAGGACTTAAAAATAAAGAAACCCCC--A-G
184184 CTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGACCTGAAGGAC
1 --TAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGACC-GAAGGAC
* * * *
184249 TTACAAATTAAGAAACCCCGGAAGGCTTAGTTTCTTAAAATTTTATTTGAAAACATCATGCACGG
63 TTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT-AAATCTCATTTGAAAACATCATGCACGG
*
184314 AAGGTCTTATGGATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAA
127 AAGGTCTTATAGATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAA
* **
184379 TCTCATTTAAAAACATCCTACACTGAAGGTCTTATGGTTGGCCCGAAGGACTTACGCATCATGCT
192 TCTCATTTAAAAACATCCTACACTG-A------ATGGATGGCCCGAAGGACTTACAAATCATGCT
* *
184444 CGAAAGACTTAATGATGGCCGGGAGGACTTAAAAATAAAGAAACCTCC-G
250 CGAAAGACTTAATGATGGCCCGGAGGACTTAAAAATAAAGAAACCCCCAG
* *
184493 -A-TTTCTAAAATCTCATTTGAAAGCATCCTGCGCTGAAGGTCTTATGGATGACC
1 TAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGACC
184546 CGAAAGTCTT
Statistics
Matches: 325, Mismatches: 26, Indels: 18
0.88 0.07 0.05
Matches are distributed among these distances:
304 3 0.01
305 139 0.43
306 109 0.34
307 1 0.00
309 1 0.00
313 72 0.22
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (299 bp):
TAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGACCGAAGGACTTA
CAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCATGCACGGAAGG
TCTTATAGATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTC
ATTTAAAAACATCCTACACTGAATGGATGGCCCGAAGGACTTACAAATCATGCTCGAAAGACTTA
ATGATGGCCCGGAGGACTTAAAAATAAAGAAACCCCCAG
Found at i:184557 original size:124 final size:127
Alignment explanation
Indices: 184325--184669 Score: 408
Period size: 124 Copynumber: 2.7 Consensus size: 127
184315 AGGTCTTATG
* * * *
184325 GATGGCCCGAAGGACTTACAAATAAAGAAACCCCCGAAGGCTTAGTTTCTTAAATCTCATTTAAA
1 GATGGCCCGGAGGACTTAAAAATAAAGAAACCCCC--A-G--TAGTTTCTAAAATCTCATTTGAA
* * * * *
184390 AACATCCTACACTGAAGGTCTTATGGTTGGCCCGAAGGACTTACGCATCATGCTCGAAAGACTTA
61 AACATCCTGCACTGAAGGTCTTATGGATGACCCGAAAGACTTACGCATCATGCTCGAAACACTTA
184455 AT
126 AT
* * *
184457 GATGGCCGGGAGGACTTAAAAATAAAGAAACCTCC-G-A-TTTCTAAAATCTCATTTGAAAGCAT
1 GATGGCCCGGAGGACTTAAAAATAAAGAAACCCCCAGTAGTTTCTAAAATCTCATTTGAAAACAT
* * *
184519 CCTGCGCTGAAGGTCTTATGGATGACCCGAAAGTCTTACGCATCATGCTCGAAACACTTACT
66 CCTGCACTGAAGGTCTTATGGATGACCCGAAAGACTTACGCATCATGCTCGAAACACTTAAT
* * *
184581 GATGTCCCGGAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAA
1 GATGGCCCGGAGGACTTAAAAATAAAGAAACCCCC--A-G--TAGTTTCTAAAATCTCATTTGAA
*
184646 AACGTCCTGCACTGAAGGTCTTAT
61 AACATCCTGCACTGAAGGTCTTAT
184670 AAATCAAGAA
Statistics
Matches: 182, Mismatches: 23, Indels: 16
0.82 0.10 0.07
Matches are distributed among these distances:
124 106 0.58
125 1 0.01
128 2 0.01
131 1 0.01
132 72 0.40
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.25
Consensus pattern (127 bp):
GATGGCCCGGAGGACTTAAAAATAAAGAAACCCCCAGTAGTTTCTAAAATCTCATTTGAAAACAT
CCTGCACTGAAGGTCTTATGGATGACCCGAAAGACTTACGCATCATGCTCGAAACACTTAAT
Found at i:184712 original size:69 final size:70
Alignment explanation
Indices: 184595--184738 Score: 254
Period size: 69 Copynumber: 2.1 Consensus size: 70
184585 TCCCGGAGGA
* *
184595 CTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACGTCCTGCACTG
1 CTTATAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTG
184660 AAGGT
66 AAGGT
*
184665 CTTATAAATCAAGAAA-CCCCGAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTG
1 CTTATAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTG
184729 AAGGT
66 AAGGT
184734 CTTAT
1 CTTAT
184739 GGATGACCCG
Statistics
Matches: 71, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
69 56 0.79
70 15 0.21
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (70 bp):
CTTATAAATCAAGAAACCCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTG
AAGGT
Found at i:184856 original size:39 final size:39
Alignment explanation
Indices: 184795--185152 Score: 522
Period size: 39 Copynumber: 9.2 Consensus size: 39
184785 TTTCTTATAT
* ** *
184795 AATCTTTTGTTTCAAGAAAAACTATCTCAAGAGAGACAA
1 AATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGACAA
*
184834 AATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGATAA
1 AATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGACAA
*
184873 AATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGATAA
1 AATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGACAA
* *
184912 AATCTTTTGTTT-GAAGGGAAACTATCTAAAGAGAGACAA
1 AATCTTTTGTTTCG-AGGGAAACTATCTCAAGCGAGACAA
*
184951 AATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGATAA
1 AATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGACAA
* * *
184990 AATCTTTTGTTTCAATGGAAACTATCTCAAGAGAGACAA
1 AATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGACAA
* *
185029 AATCTTTTGTTTCGAAGGAAACTATCTCAAGCGAGATAA
1 AATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGACAA
* * *
185068 AATCTTTTATTTCAAGGGAAACTATCTCAAGCGAGA-TA
1 AATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGACAA
* *
185106 AATCTTTTGTTTCAAGGGAAACTATCTCAAGTGAGACAA
1 AATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGACAA
185145 AATCTTTT
1 AATCTTTT
185153 CAAGGGCATG
Statistics
Matches: 290, Mismatches: 26, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
38 36 0.12
39 253 0.87
40 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (39 bp):
AATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGACAA
Found at i:185001 original size:117 final size:117
Alignment explanation
Indices: 184795--185152 Score: 576
Period size: 117 Copynumber: 3.1 Consensus size: 117
184785 TTTCTTATAT
* **
184795 AATCTTTTGTTTCAAGAAAAACTATCTCAAGAGAGACAAAATCTTTTGTTTCGAGGGAAACTATC
1 AATCTTTTGTTTGAAGGGAAACTATCTCAAGAGAGACAAAATCTTTTGTTTCGAGGGAAACTATC
* * *
184860 TCAAGCGAGATAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGCGAGATAA
66 TCAAGCGAGATAAAATCTTTTGTTTCAAGGGAAACTATCTCAAGAGAGACAA
*
184912 AATCTTTTGTTTGAAGGGAAACTATCTAAAGAGAGACAAAATCTTTTGTTTCGAGGGAAACTATC
1 AATCTTTTGTTTGAAGGGAAACTATCTCAAGAGAGACAAAATCTTTTGTTTCGAGGGAAACTATC
*
184977 TCAAGCGAGATAAAATCTTTTGTTTCAATGGAAACTATCTCAAGAGAGACAA
66 TCAAGCGAGATAAAATCTTTTGTTTCAAGGGAAACTATCTCAAGAGAGACAA
* * * *
185029 AATCTTTTGTTTCGAA-GGAAACTATCTCAAGCGAGATAAAATCTTTTATTTCAAGGGAAACTAT
1 AATCTTTTGTTT-GAAGGGAAACTATCTCAAGAGAGACAAAATCTTTTGTTTCGAGGGAAACTAT
*
185093 CTCAAGCGAGAT-AAATCTTTTGTTTCAAGGGAAACTATCTCAAGTGAGACAA
65 CTCAAGCGAGATAAAATCTTTTGTTTCAAGGGAAACTATCTCAAGAGAGACAA
185145 AATCTTTT
1 AATCTTTT
185153 CAAGGGCATG
Statistics
Matches: 225, Mismatches: 15, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
116 46 0.20
117 176 0.78
118 3 0.01
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (117 bp):
AATCTTTTGTTTGAAGGGAAACTATCTCAAGAGAGACAAAATCTTTTGTTTCGAGGGAAACTATC
TCAAGCGAGATAAAATCTTTTGTTTCAAGGGAAACTATCTCAAGAGAGACAA
Found at i:185424 original size:34 final size:34
Alignment explanation
Indices: 185318--185431 Score: 174
Period size: 34 Copynumber: 3.4 Consensus size: 34
185308 TTTGTTTCCT
* *
185318 GTGAGACGAAATTTGTTTTGATAAATTGTCTCAA
1 GTGAGACAAAATTTGTTTTGATAAATTATCTCAA
* *
185352 GCGAGACGAAATTTGTTTTGATAAATTATCTCAA
1 GTGAGACAAAATTTGTTTTGATAAATTATCTCAA
* *
185386 GTGAGACAAAATTTGTTTTGATAAAATATCTCAT
1 GTGAGACAAAATTTGTTTTGATAAATTATCTCAA
185420 GTGAGACAAAAT
1 GTGAGACAAAAT
185432 ATATTTTTTA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
34 74 1.00
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (34 bp):
GTGAGACAAAATTTGTTTTGATAAATTATCTCAA
Found at i:185573 original size:32 final size:32
Alignment explanation
Indices: 185537--185605 Score: 102
Period size: 32 Copynumber: 2.2 Consensus size: 32
185527 AGGATGTTGA
* *
185537 ATGCCCCAATATTCGATATTGAATCTCCGAAG
1 ATGCCCCAAAATTCGATATTGAATCTCCAAAG
* *
185569 ATGCCCCAAAATTTGATGTTGAATCTCCAAAG
1 ATGCCCCAAAATTCGATATTGAATCTCCAAAG
185601 ATGCC
1 ATGCC
185606 ATTTATTGCT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.28
Consensus pattern (32 bp):
ATGCCCCAAAATTCGATATTGAATCTCCAAAG
Found at i:186635 original size:11 final size:10
Alignment explanation
Indices: 186619--186668 Score: 61
Period size: 11 Copynumber: 5.1 Consensus size: 10
186609 TTATTGTCCC
186619 TTTTCTTTGAT
1 TTTTCTTTG-T
186630 TTTTCTTTGCT
1 TTTTCTTTG-T
186641 TTTTCTTT-T
1 TTTTCTTTGT
186650 TTTTCTTT-T
1 TTTTCTTTGT
186659 TTTT-TTTGT
1 TTTTCTTTGT
186668 T
1 T
186669 CTGATTGGAT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
8 3 0.08
9 16 0.43
11 18 0.49
ACGTcount: A:0.02, C:0.10, G:0.06, T:0.82
Consensus pattern (10 bp):
TTTTCTTTGT
Found at i:186659 original size:15 final size:14
Alignment explanation
Indices: 186619--186670 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 14
186609 TTATTGTCCC
*
186619 TTTTCTTTGATTTTTC
1 TTTTCTTT--TTTTTT
*
186635 TTTGCTTTTTCTTTT
1 TTTTCTTTTT-TTTT
186650 TTTTCTTTTTTTTT
1 TTTTCTTTTTTTTT
186664 TTGTTCT
1 TT-TTCT
186671 GATTGGATCT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
14 8 0.26
15 16 0.52
16 7 0.23
ACGTcount: A:0.02, C:0.12, G:0.06, T:0.81
Consensus pattern (14 bp):
TTTTCTTTTTTTTT
Found at i:186850 original size:2 final size:2
Alignment explanation
Indices: 186843--186878 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
186833 ACAACAAGGG
*
186843 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
186879 GGATAAATGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:193806 original size:3 final size:3
Alignment explanation
Indices: 193785--193823 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
193775 CGTCCGAGTT
193785 TTA TT- TTA -TA TTA -TA TTA TTA TTA TTA -TA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
193824 AATTTCTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
2 8 0.25
3 24 0.75
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:193809 original size:11 final size:11
Alignment explanation
Indices: 193785--193824 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
193775 CGTCCGAGTT
193785 TTATT-TTATA
1 TTATTATTATA
193795 TTA-TA-T-TA
1 TTATTATTATA
193803 TTATTATTATA
1 TTATTATTATA
193814 TTATTATTATA
1 TTATTATTATA
193825 ATTTCTAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
8 5 0.19
9 4 0.15
10 4 0.15
11 13 0.50
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATTATTATA
Found at i:193812 original size:14 final size:14
Alignment explanation
Indices: 193793--193823 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
193783 TTTTATTTTA
193793 TATTATATTATTAT
1 TATTATATTATTAT
193807 TATTATATTATTAT
1 TATTATATTATTAT
193821 TAT
1 TAT
193824 AATTTCTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TATTATATTATTAT
Found at i:195121 original size:21 final size:21
Alignment explanation
Indices: 195097--195136 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
195087 GTAATTTTAA
*
195097 TATTTGATA-TTATTATAAAAT
1 TATTT-ATACTTATAATAAAAT
195118 TATTTATACTTATAATAAA
1 TATTTATACTTATAATAAA
195137 TAATATATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (21 bp):
TATTTATACTTATAATAAAAT
Found at i:198759 original size:17 final size:18
Alignment explanation
Indices: 198723--198760 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
198713 TGGTGCTAAA
*
198723 GAATGAAAAAGAGATGAG
1 GAATGAAAAAGAGATAAG
*
198741 GAATGAAAAAGTGA-AAG
1 GAATGAAAAAGAGATAAG
198758 GAA
1 GAA
198761 AGGTAATTCG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.58, C:0.00, G:0.32, T:0.11
Consensus pattern (18 bp):
GAATGAAAAAGAGATAAG
Found at i:201027 original size:42 final size:42
Alignment explanation
Indices: 200966--201107 Score: 239
Period size: 42 Copynumber: 3.4 Consensus size: 42
200956 TAAGAAAATT
* * *
200966 TGGGGCATTTTGAAAGCCCATTTTAGCCAAAAATAATTCATG
1 TGGGGCATTTTGAAGGCCCATTTCAGACAAAAATAATTCATG
201008 TGGGGCATTTTGAAGGCCCATTTCAGACAAAAATAATTCATG
1 TGGGGCATTTTGAAGGCCCATTTCAGACAAAAATAATTCATG
*
201050 TGGGGCATTTTGAAGGCCCATTTCAGACAAAAATGATTCATG
1 TGGGGCATTTTGAAGGCCCATTTCAGACAAAAATAATTCATG
*
201092 CGGGGCATTTTGAAGG
1 TGGGGCATTTTGAAGG
201108 TTCACATCAA
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 95 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (42 bp):
TGGGGCATTTTGAAGGCCCATTTCAGACAAAAATAATTCATG
Found at i:208865 original size:3 final size:3
Alignment explanation
Indices: 208844--208882 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
208834 CGTCCGAGTT
208844 TTA TT- TTA -TA TTA -TA TTA TTA TTA TTA -TA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
208883 AATTTCTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
2 8 0.25
3 24 0.75
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:208868 original size:11 final size:11
Alignment explanation
Indices: 208844--208883 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
208834 CGTCCGAGTT
208844 TTATT-TTATA
1 TTATTATTATA
208854 TTA-TA-T-TA
1 TTATTATTATA
208862 TTATTATTATA
1 TTATTATTATA
208873 TTATTATTATA
1 TTATTATTATA
208884 ATTTCTAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
8 5 0.19
9 4 0.15
10 4 0.15
11 13 0.50
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATTATTATA
Done.