Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006189.1 Hibiscus syriacus cultivar Beakdansim tig00014728_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 980383
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
File 6 of 7
Found at i:764185 original size:29 final size:29
Alignment explanation
Indices: 764140--764204 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
764130 TATATAAAAG
* * * *
764140 TAAATATAATTATTTATTTACATACTAAA
1 TAAATATAAATAGTTATGTACATAATAAA
* *
764169 TAAATATAAATAGTTATGTATATAATATA
1 TAAATATAAATAGTTATGTACATAATAAA
764198 TAAATAT
1 TAAATAT
764205 TTATTTATAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (29 bp):
TAAATATAAATAGTTATGTACATAATAAA
Found at i:764200 original size:23 final size:22
Alignment explanation
Indices: 764168--764216 Score: 71
Period size: 23 Copynumber: 2.2 Consensus size: 22
764158 TACATACTAA
764168 ATAAATATAAATAGTTATGTAT
1 ATAAATATAAATAGTTATGTAT
* *
764190 ATAATATATAAATATTTATTTAT
1 ATAA-ATATAAATAGTTATGTAT
764213 ATAA
1 ATAA
764217 CGGTGTTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 4 0.17
23 20 0.83
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (22 bp):
ATAAATATAAATAGTTATGTAT
Found at i:764584 original size:20 final size:20
Alignment explanation
Indices: 764559--764972 Score: 442
Period size: 20 Copynumber: 20.4 Consensus size: 20
764549 GATTTTTAAG
** *
764559 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGAATCCGTA
**
764579 AATCGCAACGCGAA-CATATA
1 AATCGCAACGCGAATC-CGTA
* *
764599 AATCGCAACGCGATTCTG-A
1 AATCGCAACGCGAATCCGTA
* * *
764618 CTATCGCAACGAGTATCCGTAAA
1 -AATCGCAACGCGAATCCGT--A
*
764641 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATCCGTA
*
764661 AATCGCAACGAC-AATACGTAA
1 AATCGCAACG-CGAATCCGT-A
*
764682 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATCCGTA
*
764702 AATCGCAACGAGAATCCGTA
1 AATCGCAACGCGAATCCGTA
* *
764722 AATCGCAACGCGATTCTGTA
1 AATCGCAACGCGAATCCGTA
*
764742 AATCGCAACGAGAATCCGTA
1 AATCGCAACGCGAATCCGTA
*
764762 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATCCGTA
764782 AATCGCAACGAC-AATCCGTAA
1 AATCGCAACG-CGAATCCGT-A
*
764803 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATCCGTA
*
764823 AATCGCAACGAC-AATACGTA
1 AATCGCAACG-CGAATCCGTA
* *
764843 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGAATCCGTA
* *
764863 AATCGCAACGAGAATACGTAA
1 AATCGCAACGCGAATCCGT-A
*
764884 AATCGCAACGCGAATCTGTA
1 AATCGCAACGCGAATCCGTA
*
764904 AATCGCAACGAGAATCCGTA
1 AATCGCAACGCGAATCCGTA
*
764924 AATCGCAACGAGAATCCGTA
1 AATCGCAACGCGAATCCGTA
* *
764944 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGAATCCGTA
764964 AATCGCAAC
1 AATCGCAAC
764973 ACTGAAATTT
Statistics
Matches: 336, Mismatches: 43, Indels: 30
0.82 0.11 0.07
Matches are distributed among these distances:
19 2 0.01
20 262 0.78
21 54 0.16
22 17 0.05
23 1 0.00
ACGTcount: A:0.38, C:0.26, G:0.19, T:0.18
Consensus pattern (20 bp):
AATCGCAACGCGAATCCGTA
Found at i:764667 original size:123 final size:122
Alignment explanation
Indices: 764559--764972 Score: 505
Period size: 121 Copynumber: 3.4 Consensus size: 122
764549 GATTTTTAAG
* * * *
764559 AATCGCAACGCGAATATGAAAATCGCAACGCGAA-CATATAAATCGCAACGCGATTCTG-ACTAT
1 AATCGCAACGCGAATACGAAAATCGCAACGAGAATC-CATAAATCGCAACGCGATTCTGTA-AAT
*
764622 CGCAACGAGTATCCGTAAAAATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTAA
64 CGCAACGAGAATCCGT-AAAATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTAA
* * * *
764682 AATCGCAACGCGTATCCGTAAATCGCAACGAGAATCCGTAAATCGCAACGCGATTCTGTAAATCG
1 AATCGCAACGCGAATACGAAAATCGCAACGAGAATCCATAAATCGCAACGCGATTCTGTAAATCG
*
764747 CAACGAGAATCCGT-AAATCGCAACGCGTATCCGTAAATCGCAACGACAATCCGTAA
66 CAACGAGAATCCGTAAAATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTAA
* * * * * * * *
764803 AATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTAAATCGCAATGCG-TATCCGTAAATC
1 AATCGCAACGCGAATACGAAAATCGCAACGAGAATCCATAAATCGCAACGCGAT-TCTGTAAATC
* * * * *
764867 GCAACGAGAATACGTAAAATCGCAACGCGAATCTGTAAATCGCAACGAGAATCCGT-A
65 GCAACGAGAATCCGTAAAATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTAA
* * * **
764924 AATCGCAACGAGAATCCGTAAATCGCAACGAGAATCTGTAAATCGCAAC
1 AATCGCAACGCGAATACGAAAATCGCAACGAGAATCCATAAATCGCAAC
764973 ACTGAAATTT
Statistics
Matches: 263, Mismatches: 24, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
120 1 0.00
121 157 0.60
122 37 0.14
123 66 0.25
124 2 0.01
ACGTcount: A:0.38, C:0.26, G:0.19, T:0.18
Consensus pattern (122 bp):
AATCGCAACGCGAATACGAAAATCGCAACGAGAATCCATAAATCGCAACGCGATTCTGTAAATCG
CAACGAGAATCCGTAAAATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTAA
Found at i:764763 original size:81 final size:81
Alignment explanation
Indices: 764559--764972 Score: 525
Period size: 81 Copynumber: 5.1 Consensus size: 81
764549 GATTTTTAAG
* * * * * ** * *
764559 AATCGCAACGCGAATATGAAAATCGCAACGCGAACATATAAATCGCAACGCG-ATTC-TGACTAT
1 AATCGCAACGCGATTCTGTAAATCGCAACGAGAATACGTAAATCGCAACGCGTATCCGT-A-AAT
*
764622 CGCAACGAGTATCCGTAAA
64 CGCAACGAGAATCCGT-AA
* *
764641 AATCGCAACGCG-TATCCGTAAATCGCAACGACAATACGTAAAATCGCAACGCGTATCCGTAAAT
1 AATCGCAACGCGAT-TCTGTAAATCGCAACGAGAATACGT-AAATCGCAACGCGTATCCGTAAAT
764705 CGCAACGAGAATCCGT-A
64 CGCAACGAGAATCCGTAA
*
764722 AATCGCAACGCGATTCTGTAAATCGCAACGAGAATCCGTAAATCGCAACGCGTATCCGTAAATCG
1 AATCGCAACGCGATTCTGTAAATCGCAACGAGAATACGTAAATCGCAACGCGTATCCGTAAATCG
*
764787 CAACGACAATCCGTAA
66 CAACGAGAATCCGTAA
* * *
764803 AATCGCAACGCG-TATCCGTAAATCGCAACGACAATACGTAAATCGCAATGCGTATCCGTAAATC
1 AATCGCAACGCGAT-TCTGTAAATCGCAACGAGAATACGTAAATCGCAACGCGTATCCGTAAATC
*
764867 GCAACGAGAATACGTAA
65 GCAACGAGAATCCGTAA
* * * *
764884 AATCGCAACGCGAATCTGTAAATCGCAACGAGAATCCGTAAATCGCAACGAGAATCCGTAAATCG
1 AATCGCAACGCGATTCTGTAAATCGCAACGAGAATACGTAAATCGCAACGCGTATCCGTAAATCG
*
764949 CAACGAGAATCTGT-A
66 CAACGAGAATCCGTAA
764964 AATCGCAAC
1 AATCGCAAC
764973 ACTGAAATTT
Statistics
Matches: 293, Mismatches: 31, Indels: 18
0.86 0.09 0.05
Matches are distributed among these distances:
80 50 0.17
81 178 0.61
82 30 0.10
83 30 0.10
84 4 0.01
85 1 0.00
ACGTcount: A:0.38, C:0.26, G:0.19, T:0.18
Consensus pattern (81 bp):
AATCGCAACGCGATTCTGTAAATCGCAACGAGAATACGTAAATCGCAACGCGTATCCGTAAATCG
CAACGAGAATCCGTAA
Found at i:765095 original size:22 final size:21
Alignment explanation
Indices: 765070--765120 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 21
765060 CTCTCTCCGG
765070 CGACATCCGTTCCTATATCCAA
1 CGACATCC-TTCCTATATCCAA
765092 CGACA----TCCTATATCCAA
1 CGACATCCTTCCTATATCCAA
765109 CGACATCCTTCC
1 CGACATCCTTCC
765121 CCATCCGGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 9
0.74 0.00 0.26
Matches are distributed among these distances:
17 17 0.68
21 3 0.12
22 5 0.20
ACGTcount: A:0.27, C:0.39, G:0.08, T:0.25
Consensus pattern (21 bp):
CGACATCCTTCCTATATCCAA
Found at i:765102 original size:17 final size:17
Alignment explanation
Indices: 765080--765117 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
765070 CGACATCCGT
765080 TCCTATATCCAACGACA
1 TCCTATATCCAACGACA
765097 TCCTATATCCAACGACA
1 TCCTATATCCAACGACA
765114 TCCT
1 TCCT
765118 TCCCCATCCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.32, C:0.37, G:0.05, T:0.26
Consensus pattern (17 bp):
TCCTATATCCAACGACA
Found at i:765645 original size:12 final size:12
Alignment explanation
Indices: 765624--765657 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
765614 ACCACATTTC
*
765624 CAATACCAAACA
1 CAATATCAAACA
765636 CAATATCAAACA
1 CAATATCAAACA
*
765648 CAATCTCAAA
1 CAATATCAAA
765658 ACCTACAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (12 bp):
CAATATCAAACA
Found at i:765834 original size:24 final size:24
Alignment explanation
Indices: 765783--765836 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
765773 GTATTCGAAA
* *
765783 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACCCAGAC
* *
765807 TTTGATATTGGTCAATACTCAGAT
1 TTTGATATTGGTCAATACCCAGAC
765831 TTTGAT
1 TTTGAT
765837 GATGTTTCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.41
Consensus pattern (24 bp):
TTTGATATTGGTCAATACCCAGAC
Found at i:768324 original size:19 final size:18
Alignment explanation
Indices: 768300--768502 Score: 114
Period size: 19 Copynumber: 11.7 Consensus size: 18
768290 AAAAATGACT
768300 ATCGCAATGCGAAAGGAAA
1 ATCGCAATGCGAAA-GAAA
768319 ATCGCAA--CG--AGAAA
1 ATCGCAATGCGAAAGAAA
*
768333 ATCGCAACGCGAATATGAAA
1 ATCGCAATGCGAA-A-GAAA
* ***
768353 ATCGCAACGCGGAAATGGCT
1 ATCGCAATGC-GAAA-GAAA
*
768373 ATCGCAATGCGAAATAAAA
1 ATCGCAATGCGAAA-GAAA
*
768392 ATCGCAA--CG--AGAGA
1 ATCGCAATGCGAAAGAAA
*
768406 ATCGCAATGCGAAATGAAC
1 ATCGCAATGCGAAA-GAAA
768425 ATCGCAA--CG-AA-AAA
1 ATCGCAATGCGAAAGAAA
768439 ATCGCAATGCGAAAAGAAA
1 ATCGCAATGCG-AAAGAAA
*
768458 ATCGCAA--CGACAG--A
1 ATCGCAATGCGAAAGAAA
*
768472 ATCGCAATGCGAAAATAAA
1 ATCGCAATGCG-AAAGAAA
*
768491 ATCGCAACGCGA
1 ATCGCAATGCGA
768503 GAAATTAGTT
Statistics
Matches: 145, Mismatches: 17, Indels: 45
0.70 0.08 0.22
Matches are distributed among these distances:
14 37 0.26
15 2 0.01
16 13 0.09
17 10 0.07
18 4 0.03
19 50 0.34
20 26 0.18
21 3 0.02
ACGTcount: A:0.46, C:0.21, G:0.22, T:0.12
Consensus pattern (18 bp):
ATCGCAATGCGAAAGAAA
Found at i:768334 original size:14 final size:14
Alignment explanation
Indices: 768315--768341 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
768305 AATGCGAAAG
768315 GAAAATCGCAACGA
1 GAAAATCGCAACGA
768329 GAAAATCGCAACG
1 GAAAATCGCAACG
768342 CGAATATGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.22, G:0.22, T:0.07
Consensus pattern (14 bp):
GAAAATCGCAACGA
Found at i:768345 original size:33 final size:33
Alignment explanation
Indices: 768300--768499 Score: 231
Period size: 33 Copynumber: 5.8 Consensus size: 33
768290 AAAAATGACT
*
768300 ATCGCAATGCGAAAGGAAAATCGCAACGAGAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAAA
* *
768333 ATCGCAACGCGAATATGAAAATCGCAACGCGGAAA
1 ATCGCAATGCGAA-ATGAAAATCGCAACG-AGAAA
* *
768368 TGGCTATCGCAATGCGAAATAAAAATCGCAACGAGAGA
1 -----ATCGCAATGCGAAATGAAAATCGCAACGAGAAA
* *
768406 ATCGCAATGCGAAATGAACATCGCAACGAAAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAAA
* * *
768439 ATCGCAATGCGAAAAGAAAATCGCAACGACAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAAA
768472 ATCGCAATGCGAAAAT-AAAATCGCAACG
1 ATCGCAATGCG-AAATGAAAATCGCAACG
768500 CGAGAAATTA
Statistics
Matches: 143, Mismatches: 16, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
33 93 0.65
34 17 0.12
35 4 0.03
38 3 0.02
39 14 0.10
40 12 0.08
ACGTcount: A:0.46, C:0.20, G:0.21, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAAA
Found at i:768444 original size:14 final size:14
Alignment explanation
Indices: 768388--768478 Score: 56
Period size: 14 Copynumber: 5.8 Consensus size: 14
768378 AATGCGAAAT
768388 AAAAATCGCAACGA
1 AAAAATCGCAACGA
* *
768402 GAGAATCGCAATGCGA
1 AAAAATCGCAA--CGA
768418 AATGAACATCGCAACGA
1 AA--AA-ATCGCAACGA
768435 AAAAATCGCAATGCGAAA
1 AAAAATCGCAA--CG--A
768453 AGAAAATCGCAACGA
1 A-AAAATCGCAACGA
* *
768468 CAGAATCGCAA
1 AAAAATCGCAA
768479 TGCGAAAATA
Statistics
Matches: 61, Mismatches: 6, Indels: 20
0.70 0.07 0.23
Matches are distributed among these distances:
14 25 0.41
15 3 0.05
16 6 0.10
17 7 0.11
18 3 0.05
19 17 0.28
ACGTcount: A:0.49, C:0.21, G:0.20, T:0.10
Consensus pattern (14 bp):
AAAAATCGCAACGA
Found at i:768531 original size:19 final size:19
Alignment explanation
Indices: 768507--768577 Score: 71
Period size: 19 Copynumber: 4.0 Consensus size: 19
768497 ACGCGAGAAA
* *
768507 TTAGTTTTGCGTTGCGATT
1 TTAGTTTCGCATTGCGATT
768526 TTAGTTTCGCATTGCGATT
1 TTAGTTTCGCATTGCGATT
768545 TT-G--TCG--TTGCGATT
1 TTAGTTTCGCATTGCGATT
**
768559 TTCTTTTCGCATTGCGATT
1 TTAGTTTCGCATTGCGATT
768578 CTCTCGTTGC
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
14 10 0.23
16 3 0.07
17 3 0.07
18 1 0.02
19 27 0.61
ACGTcount: A:0.11, C:0.15, G:0.23, T:0.51
Consensus pattern (19 bp):
TTAGTTTCGCATTGCGATT
Found at i:768553 original size:33 final size:33
Alignment explanation
Indices: 768511--768594 Score: 125
Period size: 33 Copynumber: 2.6 Consensus size: 33
768501 GAGAAATTAG
768511 TTTTG-CGTTGCGATTTTAGTTTCGCATTGCGA
1 TTTTGTCGTTGCGATTTTAGTTTCGCATTGCGA
**
768543 TTTTGTCGTTGCGATTTTCTTTTCGCATTGCGA
1 TTTTGTCGTTGCGATTTTAGTTTCGCATTGCGA
* *
768576 TTCTCTCGTTGCGATTTTA
1 TTTTGTCGTTGCGATTTTA
768595 AAAACACTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
32 5 0.11
33 41 0.89
ACGTcount: A:0.11, C:0.18, G:0.21, T:0.50
Consensus pattern (33 bp):
TTTTGTCGTTGCGATTTTAGTTTCGCATTGCGA
Found at i:771057 original size:19 final size:19
Alignment explanation
Indices: 771018--771128 Score: 98
Period size: 19 Copynumber: 6.3 Consensus size: 19
771008 GCAATGAGAG
*
771018 AATCGCAACGCGAATATGAA
1 AATCGCAATGCGAA-ATGAA
771038 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
771057 AATCGCAA--CGACA-G--
1 AATCGCAATGCGAAATGAA
*
771071 AATCGCCATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
771090 AATCGCAA--CGACA-G--
1 AATCGCAATGCGAAATGAA
*
771104 AATCGCAATGCGAAAAGAA
1 AATCGCAATGCGAAATGAA
771123 AATCGC
1 AATCGC
771129 TTCTCTCGTT
Statistics
Matches: 74, Mismatches: 7, Indels: 21
0.73 0.07 0.21
Matches are distributed among these distances:
14 15 0.20
16 10 0.14
17 10 0.14
19 26 0.35
20 13 0.18
ACGTcount: A:0.45, C:0.22, G:0.21, T:0.13
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:771082 original size:33 final size:33
Alignment explanation
Indices: 771038--771128 Score: 164
Period size: 33 Copynumber: 2.8 Consensus size: 33
771028 CGAATATGAA
771038 AATCGCAATGCGAAATGAAAATCGCAACGACAG
1 AATCGCAATGCGAAATGAAAATCGCAACGACAG
*
771071 AATCGCCATGCGAAATGAAAATCGCAACGACAG
1 AATCGCAATGCGAAATGAAAATCGCAACGACAG
*
771104 AATCGCAATGCGAAAAGAAAATCGC
1 AATCGCAATGCGAAATGAAAATCGC
771129 TTCTCTCGTT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.45, C:0.22, G:0.21, T:0.12
Consensus pattern (33 bp):
AATCGCAATGCGAAATGAAAATCGCAACGACAG
Found at i:771195 original size:20 final size:19
Alignment explanation
Indices: 771135--771235 Score: 86
Period size: 19 Copynumber: 5.5 Consensus size: 19
771125 TCGCTTCTCT
771135 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
* ***
771154 CATTGCGATAGCCATTTCCG
1 CGTTGCGATTTTCATTT-CG
771174 CGTTGCGATTTTCATATTCG
1 CGTTGCGATTTTCAT-TTCG
*
771194 CGTTGCGA--TT-A--TCT
1 CGTTGCGATTTTCATTTCG
*
771208 CGTTGCGATTTTCCTTTCG
1 CGTTGCGATTTTCATTTCG
*
771227 CATTGCGAT
1 CGTTGCGAT
771236 AGTCATTTTT
Statistics
Matches: 63, Mismatches: 12, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
14 10 0.16
16 2 0.03
17 1 0.02
18 2 0.03
19 23 0.37
20 23 0.37
21 2 0.03
ACGTcount: A:0.14, C:0.24, G:0.21, T:0.42
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:771967 original size:14 final size:14
Alignment explanation
Indices: 771948--771984 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
771938 CATCAATTAA
*
771948 ACAAATCAACTTTT
1 ACAAATCAACTGTT
*
771962 ACAAATCATCTGTT
1 ACAAATCAACTGTT
771976 ACAAATCAA
1 ACAAATCAA
771985 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.46, C:0.22, G:0.03, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTGTT
Found at i:772116 original size:12 final size:12
Alignment explanation
Indices: 772099--772129 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
772089 CTGCATAAAC
772099 CAAACATTTGCT
1 CAAACATTTGCT
772111 CAAACATTTGCT
1 CAAACATTTGCT
772123 CAAACAT
1 CAAACAT
772130 CAAATTATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.39, C:0.26, G:0.06, T:0.29
Consensus pattern (12 bp):
CAAACATTTGCT
Found at i:773402 original size:42 final size:42
Alignment explanation
Indices: 773356--773435 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 42
773346 CGATGACAGT
* * *
773356 GGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGG
1 GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGATAGG
* * *
773398 GGCCTCTTCAACGATAGGAGTGGACTCTTGAGGGATGA
1 GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGA
773436 CAGGCGAGTC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 32 1.00
ACGTcount: A:0.23, C:0.17, G:0.39, T:0.21
Consensus pattern (42 bp):
GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGATAGG
Found at i:775373 original size:52 final size:52
Alignment explanation
Indices: 775311--775413 Score: 197
Period size: 52 Copynumber: 2.0 Consensus size: 52
775301 TCTTTTGGTT
775311 GAAATGAAAATCGCAACGAGAGAATCGCAACGCGAAAAGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGCGAAAAGAAAATCGCAATGC
*
775363 GAAATGAAAATCGCAACGAGAGAATCGCAACGCGAAATGAAAATCGCAATG
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGCGAAAAGAAAATCGCAATG
775414 AGAGAATCGC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (52 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGCGAAAAGAAAATCGCAATGC
Found at i:775442 original size:19 final size:19
Alignment explanation
Indices: 775333--775449 Score: 119
Period size: 19 Copynumber: 6.7 Consensus size: 19
775323 GCAACGAGAG
* *
775333 AATCGCAACGCGAAAAGAA
1 AATCGCAATGCGAAATGAA
775352 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
775371 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
*
775385 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
775404 AATCGCAAT--G--A-GAG
1 AATCGCAATGCGAAATGAA
775418 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
775437 AATCGCAATGCGA
1 AATCGCAATGCGA
775450 TTTTGGTTTC
Statistics
Matches: 81, Mismatches: 7, Indels: 20
0.75 0.06 0.19
Matches are distributed among these distances:
14 21 0.26
15 2 0.02
16 3 0.04
17 3 0.04
18 2 0.02
19 50 0.62
ACGTcount: A:0.46, C:0.19, G:0.23, T:0.12
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:775445 original size:33 final size:33
Alignment explanation
Indices: 775352--775446 Score: 172
Period size: 33 Copynumber: 2.9 Consensus size: 33
775342 GCGAAAAGAA
*
775352 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
1 AATCGCAATGCGAAATGAAAATCGCAATGAGAG
*
775385 AATCGCAACGCGAAATGAAAATCGCAATGAGAG
1 AATCGCAATGCGAAATGAAAATCGCAATGAGAG
775418 AATCGCAATGCGAAATGAAAATCGCAATG
1 AATCGCAATGCGAAATGAAAATCGCAATG
775447 CGATTTTGGT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.45, C:0.18, G:0.23, T:0.14
Consensus pattern (33 bp):
AATCGCAATGCGAAATGAAAATCGCAATGAGAG
Found at i:775480 original size:14 final size:14
Alignment explanation
Indices: 775461--775550 Score: 72
Period size: 14 Copynumber: 5.7 Consensus size: 14
775451 TTTGGTTTCG
775461 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
775475 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
775494 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
775508 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
775527 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
775541 CGTTGCGATT
1 CGTTGCGATT
775551 TTCATTTCGC
Statistics
Matches: 62, Mismatches: 4, Indels: 20
0.72 0.05 0.23
Matches are distributed among these distances:
14 30 0.48
16 6 0.10
17 6 0.10
19 20 0.32
ACGTcount: A:0.09, C:0.24, G:0.22, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:775493 original size:33 final size:33
Alignment explanation
Indices: 775445--775569 Score: 232
Period size: 33 Copynumber: 3.8 Consensus size: 33
775435 AAAATCGCAA
**
775445 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
775478 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
775511 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
775544 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTCATTTCGCGTTGCGATT
775570 TTAAGTTTAG
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 90 1.00
ACGTcount: A:0.09, C:0.22, G:0.23, T:0.46
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:775499 original size:19 final size:19
Alignment explanation
Indices: 775475--775571 Score: 106
Period size: 19 Copynumber: 5.6 Consensus size: 19
775465 GCGATTCTCT
775475 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
775494 CGTTGCGA--TTC---TCT
1 CGTTGCGATTTTCATTTCG
775508 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
775527 CGTTGCGA--TTC---TCT
1 CGTTGCGATTTTCATTTCG
775541 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
775560 CGTTGCGATTTT
1 CGTTGCGATTTT
775572 AAGTTTAGAA
Statistics
Matches: 64, Mismatches: 4, Indels: 20
0.73 0.05 0.23
Matches are distributed among these distances:
14 20 0.31
16 6 0.09
17 6 0.09
19 32 0.50
ACGTcount: A:0.09, C:0.23, G:0.22, T:0.46
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:776291 original size:81 final size:81
Alignment explanation
Indices: 776143--776558 Score: 484
Period size: 81 Copynumber: 5.1 Consensus size: 81
776133 TTAAAAATCG
* * *
776143 CGTTGCAATTTACGGATTA-TCGTTGCGATTTACGGATTCTCGTTGCGATTTACAGATTCGCGTT
1 CGTTGCGATTTACGGA-TACGCGTTGCGATTTACGGATTCTCGTTGCGATTTACAGATACGCGTT
*
776207 GCGATTTTACGTATTCT
65 GCGATTTTACGGATTCT
* * * * * *
776224 CGTTGCGATTTACGGATACGCATTGCGATTTACGTATTGTCGTTGCGATTTACGGATACACGATG
1 CGTTGCGATTTACGGATACGCGTTGCGATTTACGGATTCTCGTTGCGATTTACAGATACGCGTTG
*
776289 CGATTTTACGGATTGT
66 CGATTTTACGGATTCT
*
776305 CGTTGCGATTTACGGATACGCGTTACGATTTACGGATTCTCGTTGCGATTTACAGA-ATCGCGTT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTACGGATTCTCGTTGCGATTTACAGATA-CGCGTT
776369 GCGA-TTTACGGATTCT
65 GCGATTTTACGGATTCT
* * *
776385 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTGTCGTTGCGATTTACGGATACGCGTT
1 CGTTGCGATTTACGGATACGCGTTGCGA-TTTACGGATTCTCGTTGCGATTTACAGATACGCGTT
*
776450 GCGATTTTTACGGATACT
65 GCGA-TTTTACGGATTCT
* * * * * ** *
776468 CGTTGCGATTTTTACGGATACTCGTTGCGATAGT-CAGAATCGCGTTGCGATTTATTG-TTCGCG
1 CGTTGCGA--TTTACGGATACGCGTTGCGAT-TTACGGATTCTCGTTGCGATTTACAGATACGCG
** *
776531 TTGCGATTTT-CATATTCG
63 TTGCGATTTTACGGATTCT
776549 CGTTGCGATT
1 CGTTGCGATT
776559 CTTAAAAATC
Statistics
Matches: 288, Mismatches: 38, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
79 2 0.01
80 41 0.14
81 173 0.60
82 5 0.02
83 30 0.10
84 17 0.06
85 20 0.07
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.38
Consensus pattern (81 bp):
CGTTGCGATTTACGGATACGCGTTGCGATTTACGGATTCTCGTTGCGATTTACAGATACGCGTTG
CGATTTTACGGATTCT
Found at i:776357 original size:121 final size:122
Alignment explanation
Indices: 776143--776498 Score: 495
Period size: 121 Copynumber: 2.9 Consensus size: 122
776133 TTAAAAATCG
* * * * *
776143 CGTTGCAATTTACGGATTA-TCGTTGCGA-TTTACGGATTCTCGTTGCGATTTACAGATTCGCGT
1 CGTTGCGATTTACGGA-TACACGTTGCGATTTTACGGATTGTCGTTGCGATTTACGGATACGCGT
* * * *
776206 TGCGATTTTACGTATTCTCGTTGCGATTTACGGATACGCATTGCGATTTACGTATTGT
65 TGCGATTTTACGGATTCTCGTTGCGATTTACGGATACGCGTTGCGATTTACGGATTCT
*
776264 CGTTGCGATTTACGGATACACGATGCGATTTTACGGATTGTCGTTGCGATTTACGGATACGCGTT
1 CGTTGCGATTTACGGATACACGTTGCGATTTTACGGATTGTCGTTGCGATTTACGGATACGCGTT
* *
776329 ACGA-TTTACGGATTCTCGTTGCGATTTACAGA-ATCGCGTTGCGATTTACGGATTCT
66 GCGATTTTACGGATTCTCGTTGCGATTTACGGATA-CGCGTTGCGATTTACGGATTCT
* *
776385 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTGTCGTTGCGATTTACGGATACGCGTT
1 CGTTGCGATTTACGGATACACGTTGCGATTTTACGGATTGTCGTTGCGATTTACGGATACGCGTT
* *
776450 GCGATTTTTACGGATACTCGTTGCGATTTTTACGGATACTCGTTGCGAT
66 GCGA-TTTTACGGATTCTCGTTGCGA--TTTACGGATACGCGTTGCGAT
776499 AGTCAGAATC
Statistics
Matches: 208, Mismatches: 19, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
120 3 0.01
121 132 0.63
122 36 0.17
123 19 0.09
125 17 0.08
126 1 0.00
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.37
Consensus pattern (122 bp):
CGTTGCGATTTACGGATACACGTTGCGATTTTACGGATTGTCGTTGCGATTTACGGATACGCGTT
GCGATTTTACGGATTCTCGTTGCGATTTACGGATACGCGTTGCGATTTACGGATTCT
Found at i:776550 original size:20 final size:20
Alignment explanation
Indices: 776140--776558 Score: 398
Period size: 20 Copynumber: 20.6 Consensus size: 20
776130 GCTTTAAAAA
*
776140 TCGCGTTGCAATTTACGGAT
1 TCGCGTTGCGATTTACGGAT
**
776160 TATCGTTGCGATTTACGGAT
1 TCGCGTTGCGATTTACGGAT
* *
776180 TCTCGTTGCGATTTACAGAT
1 TCGCGTTGCGATTTACGGAT
*
776200 TCGCGTTGCGATTTTACGTAT
1 TCGCGTTGCGA-TTTACGGAT
*
776221 TCTCGTTGCGATTTACGGAT
1 TCGCGTTGCGATTTACGGAT
* * *
776241 ACGCATTGCGATTTACGTAT
1 TCGCGTTGCGATTTACGGAT
776261 T-GTCGTTGCGATTTACGGAT
1 TCG-CGTTGCGATTTACGGAT
* * *
776281 ACACGATGCGATTTTACGGAT
1 TCGCGTTGCGA-TTTACGGAT
776302 T-GTCGTTGCGATTTACGGAT
1 TCG-CGTTGCGATTTACGGAT
* *
776322 ACGCGTTACGATTTACGGAT
1 TCGCGTTGCGATTTACGGAT
* * *
776342 TCTCGTTGCGATTTACAGAA
1 TCGCGTTGCGATTTACGGAT
776362 TCGCGTTGCGATTTACGGAT
1 TCGCGTTGCGATTTACGGAT
*
776382 TCTCGTTGCGATTTACGGAT
1 TCGCGTTGCGATTTACGGAT
* *
776402 ACGCGTTGCGATTTTACGTAT
1 TCGCGTTGCGA-TTTACGGAT
776423 T-GTCGTTGCGATTTACGGAT
1 TCG-CGTTGCGATTTACGGAT
*
776443 ACGCGTTGCGATTTTTACGGAT
1 TCGCGTTGCGA--TTTACGGAT
* *
776465 ACTCGTTGCGATTTTTACGGAT
1 TCGCGTTGCGA--TTTACGGAT
* * * * *
776487 ACTCGTTGCGATAGT-CAGAA
1 TCGCGTTGCGAT-TTACGGAT
**
776507 TCGCGTTGCGATTTATTG-T
1 TCGCGTTGCGATTTACGGAT
* **
776526 TCGCGTTGCGATTTTCATAT
1 TCGCGTTGCGATTTACGGAT
776546 TCGCGTTGCGATT
1 TCGCGTTGCGATT
776559 CTTAAAAATC
Statistics
Matches: 331, Mismatches: 54, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
19 16 0.05
20 222 0.67
21 52 0.16
22 41 0.12
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.38
Consensus pattern (20 bp):
TCGCGTTGCGATTTACGGAT
Found at i:776597 original size:145 final size:143
Alignment explanation
Indices: 776313--776602 Score: 320
Period size: 145 Copynumber: 2.0 Consensus size: 143
776303 GTCGTTGCGA
* *
776313 TTTACGGATACGCGTTACGATTTACGGATTCTCGTTGCGATTTACAGAATCGCGTTGCGATTTAC
1 TTTACGGATACGCGTTACGATTTACGGATACTCGTTGCGATGTACAGAATCGCGTTGCGATTTAC
* * *** * **
776378 GGATTCTCGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTGTCGTTGCGATTTACGGAT
66 GGATTCGCGTTGCGATTTACAGATACGCGTTGCGATTTTAAAAATCGTCAATGCGATTTACGGAT
*
776443 ACGCGTTGCGATT
131 ACGCATTGCGATT
* *
776456 TTTACGGATACTCGTTGCGATTTTTACGGATACTCGTTGCGATAGT-CAGAATCGCGTTGCGATT
1 TTTACGGATACGCGTTACGA--TTTACGGATACTCGTTGCGAT-GTACAGAATCGCGTTGCGATT
** * * *
776520 TATTG-TTCGCGTTGCGATTTTCATATTCGCGTTGCGATTCTTAAAAATCG-CAATGCGAATTTG
63 TACGGATTCGCGTTGCGATTTACAGATACGCGTTGCGATT-TTAAAAATCGTCAATGCG-A-TT-
776583 TAC-GAT-CGCATTGCGATT
124 TACGGATACGCATTGCGATT
776601 TT
1 TT
776603 CCAGAACCGC
Statistics
Matches: 122, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
143 18 0.15
144 34 0.28
145 61 0.50
146 6 0.05
147 3 0.02
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (143 bp):
TTTACGGATACGCGTTACGATTTACGGATACTCGTTGCGATGTACAGAATCGCGTTGCGATTTAC
GGATTCGCGTTGCGATTTACAGATACGCGTTGCGATTTTAAAAATCGTCAATGCGATTTACGGAT
ACGCATTGCGATT
Found at i:779503 original size:16 final size:16
Alignment explanation
Indices: 779482--779517 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
779472 TATGTTTGGC
779482 TTGAAAGTTGACAAAG
1 TTGAAAGTTGACAAAG
*
779498 TTGAAAGTTGGCAAAG
1 TTGAAAGTTGACAAAG
779514 TTGA
1 TTGA
779518 CATCTTTGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.39, C:0.06, G:0.28, T:0.28
Consensus pattern (16 bp):
TTGAAAGTTGACAAAG
Found at i:779573 original size:40 final size:39
Alignment explanation
Indices: 779518--779606 Score: 108
Period size: 40 Copynumber: 2.3 Consensus size: 39
779508 GCAAAGTTGA
* *
779518 CATCTTTGGTTGGTGGCTAACTTGTACACATTGGA-AAATT
1 CATCTTTGGTAGGTGGCCAACTTGTACACA-T-GATAAATT
* * *
779558 CATCTTTGGTAGGTGGCCAACTTTTGCACATGATAATTT
1 CATCTTTGGTAGGTGGCCAACTTGTACACATGATAAATT
779597 CATCTTTGGT
1 CATCTTTGGT
779607 CCCTAAAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
38 2 0.05
39 15 0.35
40 26 0.60
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.39
Consensus pattern (39 bp):
CATCTTTGGTAGGTGGCCAACTTGTACACATGATAAATT
Found at i:795975 original size:45 final size:46
Alignment explanation
Indices: 795924--796034 Score: 122
Period size: 46 Copynumber: 2.4 Consensus size: 46
795914 AAAAAATAAA
* * *
795924 AAAAGGAAAAAAGGAAAAAAAA-TAAAAA-ATGAAAAAATGAAAAGG
1 AAAAGGAAAAAAAGAAAAAAAAGGAAAAATAT-AAAAAAGGAAAAGG
*
795969 AAAAGGAAAAAAATAAAAAAAAGGAAAAATATAAAAAAGGAAAA--
1 AAAAGGAAAAAAAGAAAAAAAAGGAAAAATATAAAAAAGGAAAAGG
*
796013 AAATGGAAAAGAAAAGAAAAAA
1 AAAAGG-AAA-AAAAGAAAAAA
796035 GAGAAAGAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
44 5 0.09
45 23 0.41
46 26 0.46
47 2 0.04
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.06
Consensus pattern (46 bp):
AAAAGGAAAAAAAGAAAAAAAAGGAAAAATATAAAAAAGGAAAAGG
Found at i:795993 original size:55 final size:54
Alignment explanation
Indices: 795930--796069 Score: 153
Period size: 54 Copynumber: 2.6 Consensus size: 54
795920 TAAAAAAAGG
*
795930 AAAAAAGGAAAAAAAATAAAAAATGAAAAAAT-GAAAAGGAAAAGGAAAAAA-ATAA
1 AAAAAAGGAAAAAAAATAAAAAA-GAAAAAATGGAAAA-GAAAA-GAAAAAAGAGAA
*
795985 AAAAAAGG-AAAAATATAAAAAAGGAAAAAAATGGAAAAGAAAAGAAAAAAGAGAA
1 AAAAAAGGAAAAAAAATAAAAAA-G-AAAAAATGGAAAAGAAAAGAAAAAAGAGAA
* * *
796040 AGAAAAAAGAGAAAGAA-AAAAAAGAAAAAA
1 A-AAAAAGGAAAAAAAATAAAAAAGAAAAAA
796070 AGAGAGAAAA
Statistics
Matches: 73, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
54 27 0.37
55 25 0.34
56 17 0.23
57 4 0.05
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (54 bp):
AAAAAAGGAAAAAAAATAAAAAAGAAAAAATGGAAAAGAAAAGAAAAAAGAGAA
Found at i:796022 original size:16 final size:16
Alignment explanation
Indices: 795930--796086 Score: 88
Period size: 18 Copynumber: 9.3 Consensus size: 16
795920 TAAAAAAAGG
795930 AAAAAAGGAAAAAAAAT
1 AAAAAAGG-AAAAAAAT
* *
795947 AAAAAATGAAAAAATGAA
1 AAAAAAGGAAAAAA--AT
795965 AAGGAAAAGGAAAAAAAT
1 AA--AAAAGGAAAAAAAT
*
795983 AAAAAAAAGGAAAAATAT
1 --AAAAAAGGAAAAAAAT
796001 AAAAAAGGAAAAAAAT
1 AAAAAAGGAAAAAAAT
** *
796017 GGAAAA-GAAAAGAA-
1 AAAAAAGGAAAAAAAT
*
796031 AAAAGA-GAAAGAAAA-
1 AAAAAAGGAAA-AAAAT
* *
796046 AAGAGAAAGAAAAAAAAGA
1 AA-A-AAAGGAAAAAAA-T
*
796065 AAAAAAGAGAGAAAAAT
1 AAAAAAG-GAAAAAAAT
796082 AAAAA
1 AAAAA
796087 GCAGGTCTAA
Statistics
Matches: 109, Mismatches: 18, Indels: 26
0.71 0.12 0.17
Matches are distributed among these distances:
14 7 0.06
15 12 0.11
16 26 0.24
17 22 0.20
18 27 0.25
19 2 0.02
20 13 0.12
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.05
Consensus pattern (16 bp):
AAAAAAGGAAAAAAAT
Found at i:796058 original size:25 final size:23
Alignment explanation
Indices: 796019--796085 Score: 68
Period size: 22 Copynumber: 2.9 Consensus size: 23
796009 AAAAAAATGG
796019 AAAAGA-AAAGAAAAAAGAGAAAGAA
1 AAAAGAGAAAG-AAAAA-A-AAAGAA
796044 AAAAGAGAAAG-AAAAAAAAGAA
1 AAAAGAGAAAGAAAAAAAAAGAA
*
796066 AAAA-AGAGAGAAAAATAAAA
1 AAAAGAGAAAGAAAAA-AAAA
796086 AGCAGGTCTA
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
21 5 0.13
22 14 0.37
23 5 0.13
24 4 0.11
25 6 0.16
26 4 0.11
ACGTcount: A:0.81, C:0.00, G:0.18, T:0.01
Consensus pattern (23 bp):
AAAAGAGAAAGAAAAAAAAAGAA
Found at i:796060 original size:15 final size:13
Alignment explanation
Indices: 796019--796078 Score: 88
Period size: 13 Copynumber: 4.8 Consensus size: 13
796009 AAAAAAATGG
796019 AAAAGA-AAAGAA
1 AAAAGAGAAAGAA
796031 AAAAGAGAAAGAA
1 AAAAGAGAAAGAA
796044 AAAAGAGAAAGAA
1 AAAAGAGAAAGAA
*
796057 AAAAAAGAAA-AA
1 AAAAGAGAAAGAA
*
796069 AAGAGAGAAA
1 AAAAGAGAAA
796079 AATAAAAAGC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
12 16 0.36
13 28 0.64
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (13 bp):
AAAAGAGAAAGAA
Found at i:796068 original size:63 final size:63
Alignment explanation
Indices: 795908--796070 Score: 174
Period size: 63 Copynumber: 2.6 Consensus size: 63
795898 TGAAGAAGAG
* *
795908 AAGAGAAAAAAATAAAAAAAGGAAAAAAGGAAAAAAAATAAAAAATGAAAAAATGAAAAGGAA
1 AAGAGAAAAAAATAAAAAAAGGAAAAAAAGAAAAAAAATAAAAAATGAAAAAATGAAAAGAAA
* * * *
795971 AAG-GAAAAAAATAAAAAAAAGGAAAAATATAAAAAAGGA-AAAAAATG-GAAAA-GAAAAGAAA
1 AAGAGAAAAAAAT-AAAAAAAGGAAAAAAAGAAAAAA-AATAAAAAATGAAAAAATGAAAAG-AA
796032 A
63 A
* *
796033 AAGAGAAAGAAAA-AAGAGAAAGAAAAAAAAGAAAAAAA
1 AAGAGAAA-AAAATAA-AAAAAGGAAAAAAAGAAAAAAA
796071 GAGAGAAAAA
Statistics
Matches: 83, Mismatches: 11, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
61 6 0.07
62 20 0.24
63 52 0.63
64 5 0.06
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.05
Consensus pattern (63 bp):
AAGAGAAAAAAATAAAAAAAGGAAAAAAAGAAAAAAAATAAAAAATGAAAAAATGAAAAGAAA
Found at i:796069 original size:8 final size:8
Alignment explanation
Indices: 795911--796086 Score: 86
Period size: 8 Copynumber: 19.9 Consensus size: 8
795901 AGAAGAGAAG
795911 AGAAAAAA
1 AGAAAAAA
*
795919 ATAAAAAA
1 AGAAAAAA
795927 AGGAAAAAA
1 A-GAAAAAA
*
795936 GGAAAAAA
1 AGAAAAAA
795944 A-ATAAAAA
1 AGA-AAAAA
795952 ATGAAAAAA
1 A-GAAAAAA
*
795961 TGAAAAGGAAA
1 AG-AAA--AAA
795972 AGGAAAAAA
1 A-GAAAAAA
*
795981 ATAAAAAAA
1 A-GAAAAAA
*
795990 AGGAAAAAT
1 A-GAAAAAA
*
795999 ATAAAAAA
1 AGAAAAAA
*
796007 GGAAAAAA
1 AGAAAAAA
796015 ATGGAAAAGAAA
1 A--G-AAA-AAA
796027 AGAAAAAA
1 AGAAAAAA
796035 GAGAAAGAAA
1 -AGAAA-AAA
*
796045 A-AAGAGAA
1 AGAA-AAAA
796053 AGAAAAAAA
1 AG-AAAAAA
796062 AGAAAAAA
1 AGAAAAAA
796070 AGAGAGAAAA
1 AGA-A-AAAA
*
796080 ATAAAAA
1 AGAAAAA
796087 GCAGGTCTAA
Statistics
Matches: 130, Mismatches: 19, Indels: 38
0.70 0.10 0.20
Matches are distributed among these distances:
7 1 0.01
8 53 0.41
9 48 0.37
10 14 0.11
11 9 0.07
12 5 0.04
ACGTcount: A:0.78, C:0.00, G:0.16, T:0.05
Consensus pattern (8 bp):
AGAAAAAA
Found at i:796070 original size:55 final size:55
Alignment explanation
Indices: 795921--796070 Score: 143
Period size: 55 Copynumber: 2.7 Consensus size: 55
795911 AGAAAAAAAT
* *
795921 AAAAA-AAGGAAAAAAG-GAAAAAAAATAAAAAATGAAAAAATGAAAAGGAAAAGGAA
1 AAAAAGAAAGAAAAAAGAGAAAAAAAA-AAAAGA--AAAAAATGAAAAGGAAAAGGAA
*
795977 AAAAA-TAA-AAAAAAG-GAAAAATATAAAAAAGGAAAAAAATGGAAAA-GAAAA-GAA
1 AAAAAGAAAGAAAAAAGAGAAAAA-A-AAAAAA-GAAAAAAAT-GAAAAGGAAAAGGAA
*
796031 AAAAGAGAAAGAAAAAAGAGAAAGAAAAAAAAGAAAAAAA
1 AAAA-AGAAAGAAAAAAGAGAAAAAAAAAAAAGAAAAAAA
796071 GAGAGAAAAA
Statistics
Matches: 81, Mismatches: 5, Indels: 17
0.79 0.05 0.17
Matches are distributed among these distances:
54 7 0.09
55 34 0.42
56 24 0.30
57 11 0.14
58 5 0.06
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.05
Consensus pattern (55 bp):
AAAAAGAAAGAAAAAAGAGAAAAAAAAAAAAGAAAAAAATGAAAAGGAAAAGGAA
Found at i:796080 original size:13 final size:12
Alignment explanation
Indices: 796019--796085 Score: 73
Period size: 13 Copynumber: 5.3 Consensus size: 12
796009 AAAAAAATGG
796019 AAAAGA-AAAGAA
1 AAAAGAGAAA-AA
796031 AAAAGAGAAAGAA
1 AAAAGAGAAA-AA
796044 AAAAGAGAAAGAA
1 AAAAGAGAAA-AA
*
796057 AAAAAAGAAAAA
1 AAAAGAGAAAAA
*
796069 AAGAGAGAAAAA
1 AAAAGAGAAAAA
796081 TAAAA
1 -AAAA
796086 AGCAGGTCTA
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
12 18 0.37
13 31 0.63
ACGTcount: A:0.81, C:0.00, G:0.18, T:0.01
Consensus pattern (12 bp):
AAAAGAGAAAAA
Found at i:796085 original size:23 final size:22
Alignment explanation
Indices: 796038--796080 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
796028 GAAAAAAGAG
796038 AAAGAAAAAAGAGAAAGAAAAA
1 AAAGAAAAAAGAGAAAGAAAAA
*
796060 AAAGAAAAAA-AGAGAGAAAAA
1 AAAGAAAAAAGAGAAAGAAAAA
796081 TAAAAAGCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (22 bp):
AAAGAAAAAAGAGAAAGAAAAA
Found at i:797426 original size:55 final size:55
Alignment explanation
Indices: 797342--797528 Score: 293
Period size: 55 Copynumber: 3.4 Consensus size: 55
797332 GAAGCAAATC
*
797342 AAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGCGAACTCGTTCACAG
1 AAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGCGAACCCGTTCACAG
* * * * **
797397 AAGATTGTTCGAGTTCTATACTCCCTGAAGCGAGAGGGAGAGAACCCATTTTCAG
1 AAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGCGAACCCGTTCACAG
*
797452 AAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGCGAACCCGTTCGCAG
1 AAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGCGAACCCGTTCACAG
*
797507 AAGATTATTCGAGTTCCATACT
1 AAGATTGTTCGAGTTCCATACT
797529 GTTGAAAACA
Statistics
Matches: 118, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 118 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (55 bp):
AAGATTGTTCGAGTTCCATACTCCCTGAAGCAAGAGGGAGCGAACCCGTTCACAG
Found at i:797902 original size:75 final size:75
Alignment explanation
Indices: 797776--797969 Score: 228
Period size: 75 Copynumber: 2.5 Consensus size: 75
797766 TTTAATTAGT
* * *
797776 ATGGTATCGATACCCCCCCATATAGGGTACCGATACCCCTATAAACATTTTGGTTCTAAGAAATA
1 ATGGTAACGATA--CCCCC-TATAGGGTACCGATACCCCTATGAACATTTTGGTTCCAAGAAATA
* *
797841 ACATAATGCTCGG
63 ACAGAATGCTCAG
** * *
797854 ATGGTAACGATACCCCCTATAGGGTACCGATACCCCTATGAGTATTTTGGTTCCGAGAAATAATA
1 ATGGTAACGATACCCCCTATAGGGTACCGATACCCCTATGAACATTTTGGTTCCAAGAAATAACA
797919 GAATGCTCAG
66 GAATGCTCAG
* * * *
797929 ATGGTACCGATACCCCCTCTTA-GGTATCGATACCCCCATGA
1 ATGGTAACGATACCCCCT-ATAGGGTACCGATACCCCTATGA
797970 TATGGTATCG
Statistics
Matches: 102, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
75 84 0.82
76 7 0.07
78 11 0.11
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (75 bp):
ATGGTAACGATACCCCCTATAGGGTACCGATACCCCTATGAACATTTTGGTTCCAAGAAATAACA
GAATGCTCAG
Found at i:797997 original size:21 final size:20
Alignment explanation
Indices: 797931--798006 Score: 82
Period size: 22 Copynumber: 3.6 Consensus size: 20
797921 ATGCTCAGAT
797931 GGTACCGATACCCCCTCT-TA
1 GGTACCGATACCCCCT-TATA
* *
797951 GGTATCGATACCCCCATGATA
1 GGTACCGATACCCCC-TTATA
*
797972 TGGTATCGATACCCCCTTAATA
1 -GGTACCGATACCCCCTT-ATA
797994 GGTACCGATACCC
1 GGTACCGATACCC
798007 TCAGGCATTT
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
20 14 0.29
21 16 0.33
22 18 0.38
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (20 bp):
GGTACCGATACCCCCTTATA
Found at i:803818 original size:23 final size:22
Alignment explanation
Indices: 803764--803892 Score: 124
Period size: 21 Copynumber: 5.9 Consensus size: 22
803754 ATTTTTGTGC
803764 ATAGAGTATCGATA-CCCC-TTA
1 ATAG-GTATCGATACCCCCTTTA
*
803785 TACAGGTATCGATACCCCCTTTGA
1 -ATAGGTATCGATACCCCCTTT-A
*
803809 ATAGGTATCGATA-CCCCTTCA
1 ATAGGTATCGATACCCCCTTTA
* *
803830 ATAGGTATTGATACCCTCTTTGA
1 ATAGGTATCGATACCCCCTTT-A
* *
803853 ATAAGTATCGATACCCTCCCTT-
1 ATAGGTATCGATACCC-CCTTTA
803875 AT-GGTATCGATACCCCCT
1 ATAGGTATCGATACCCCCT
803893 GTCGGGTTTA
Statistics
Matches: 89, Mismatches: 12, Indels: 14
0.77 0.10 0.12
Matches are distributed among these distances:
20 2 0.02
21 34 0.38
22 20 0.22
23 29 0.33
24 4 0.04
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (22 bp):
ATAGGTATCGATACCCCCTTTA
Found at i:803836 original size:44 final size:44
Alignment explanation
Indices: 803764--803892 Score: 154
Period size: 44 Copynumber: 2.9 Consensus size: 44
803754 ATTTTTGTGC
*
803764 ATAGAGTATCGATACCCCTT-ATACAGGTATCGATACCCCCTTTGA
1 ATAG-GTATCGATACCCCTTCA-ATAGGTATCGATACCCCCTTTGA
* *
803809 ATAGGTATCGATACCCCTTCAATAGGTATTGATACCCTCTTTGA
1 ATAGGTATCGATACCCCTTCAATAGGTATCGATACCCCCTTTGA
* * **
803853 ATAAGTATCGATA-CCCTCCCTTATGGTATCGATACCCCCT
1 ATAGGTATCGATACCCCTTCAATA-GGTATCGATACCCCCT
803893 GTCGGGTTTA
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
43 7 0.10
44 61 0.84
45 5 0.07
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (44 bp):
ATAGGTATCGATACCCCTTCAATAGGTATCGATACCCCCTTTGA
Found at i:806622 original size:75 final size:76
Alignment explanation
Indices: 806497--806684 Score: 238
Period size: 75 Copynumber: 2.5 Consensus size: 76
806487 TTTAATTAGT
* * *
806497 ATGGTATCGATACCCCCCATATAGGGTACCGATACCCCTATAAACATTTTGGTTCTAAGAAATAA
1 ATGGTATCGATACCCCTC-TATAGGGTACCGATACCCCTACAAACATTTTGGTTCCAAGAAATAA
*
806562 CATAATGCTCGA
65 CAGAATGCTCGA
* ** *
806574 ATGGTATCGATA-CCCTCTATAGGGTACCGATACCCCTACGAGTATTTTGGTTCCGAGAAATAAC
1 ATGGTATCGATACCCCTCTATAGGGTACCGATACCCCTACAAACATTTTGGTTCCAAGAAATAAC
*
806638 AGAATGCTCGG
66 AGAATGCTCGA
* *
806649 ATGGTACCGATACCCCCTCT-TA-GGTATCGATACCCC
1 ATGGTATCGATA-CCCCTCTATAGGGTACCGATACCCC
806685 CATGATATGG
Statistics
Matches: 98, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
75 74 0.76
76 6 0.06
77 18 0.18
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (76 bp):
ATGGTATCGATACCCCTCTATAGGGTACCGATACCCCTACAAACATTTTGGTTCCAAGAAATAAC
AGAATGCTCGA
Found at i:806717 original size:21 final size:20
Alignment explanation
Indices: 806651--806726 Score: 82
Period size: 22 Copynumber: 3.6 Consensus size: 20
806641 ATGCTCGGAT
806651 GGTACCGATACCCCCTCT-TA
1 GGTACCGATACCCCCT-TATA
* *
806671 GGTATCGATACCCCCATGATA
1 GGTACCGATACCCCC-TTATA
*
806692 TGGTATCGATACCCCCTTAATA
1 -GGTACCGATACCCCCTT-ATA
806714 GGTACCGATACCC
1 GGTACCGATACCC
806727 TCAGGCATTT
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
20 14 0.29
21 16 0.33
22 18 0.38
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (20 bp):
GGTACCGATACCCCCTTATA
Found at i:807494 original size:55 final size:55
Alignment explanation
Indices: 807407--808667 Score: 1325
Period size: 55 Copynumber: 22.8 Consensus size: 55
807397 TAACTCAACA
* * * * * *
807407 TATACACCCTGAAGGGAATAGGGAGCGAACCCGTTGGCAGAAGAATGTTAGAGTTT
1 TATACTCCCTGAAGCG-AGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTC
* * *
807463 TATACTCCCTGAAGCGAGAGGGAACGAACCCGTTCGCAGAAGATTGTTTGAGTTC
1 TATACTCCCTGAAGCGAGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTC
** * * * *
807518 TATACTCCCTGAAAAGAATAGGGAGTGAACCCGTTCGCTGAAGATTGTTCGAGTTC
1 TATACTCCCTGAAGCG-AGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTC
* * *
807574 TATACTCCCTGAAAG-GAATATGGAGCGAACCCGTTGGCAGAAGAATGTTCGAGTTC
1 TATACTCCCTG-AAGCG-AGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTC
* *
807630 TATACTCCCTG-AGCTGAGAGGGAGCGAACCCATTCGCAGAAGATTGTTCGAGTTC
1 TATACTCCCTGAAGC-GAGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTC
** * * *
807685 TATACTCCCTGAAAAGAATAGGGAGCGAACCCGTTGGTAGAATATTGTTCGAGTTC
1 TATACTCCCTGAAGCG-AGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTC
* ** ** * *
807741 TATACTCCCTAAAAAGA-ATAG-GCGAACCCGTTGGCAGAAGAATGTTTGAGTTC
1 TATACTCCCTGAAGCGAGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTC
* * * ** *
807794 TATACTCCCTGTAGCAAGAGGGAGCGAAGCCGTTTTCAGAAGATTATTCGAGTTC
1 TATACTCCCTGAAGCGAGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTC
* * * * *
807849 CATACTCCCTGAAGCAAGAGGGAGAGAACTCGTTGGCAGAAGAATGTTCGAGTTC
1 TATACTCCCTGAAGCGAGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTC
* *
807904 TATACTCCTTGAAGCAAGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTT-
1 TATACTCCCTGAAGCGAGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTC
* * * * *
807958 TCATGCTCCTTGAAGCAAGAGGTAGCGAACCCGTTCGCAGAAGATTGTTCGAGTTC
1 T-ATACTCCCTGAAGCGAGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTC
* ** * * * * *
808014 CATACTCCCTGAAGAAAGAGGGAGTGAACACGTTGGTATAAGATTATTCGAGTTC
1 TATACTCCCTGAAGCGAGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTC
* * * * *
808069 TATACTCCCTAAAAG-AATAGGGAGCGAACCCGTTAGTAGAAGATTGTTCGAGTTAC
1 TATACTCCCT-GAAGCGAGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTT-C
* * * *
808125 -ATACTCCCTGAAGCAAGAGAGAGCGAACCCGTTGGCAGAAGACTATTCGAGTTC
1 TATACTCCCTGAAGCGAGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTC
** * * * * *
808179 TATACTCCCTGAAAAGAATAGGGAGTGAACCCGTTAGTAGAAGATTGTTTGAGTTC
1 TATACTCCCTGAAGCG-AGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTC
* * * * *
808235 CATACTCCCTAAAGCAAGAGGGAGCAAACCCGTTGGCAGAAGAATGTTCGAGTTC
1 TATACTCCCTGAAGCGAGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTC
** * * * *
808290 TATACTCCCTGAAAAGAATAGGGAGCGAACCCGTTCGCAGAATATTATTCGAGTTC
1 TATACTCCCTGAAGCG-AGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTC
** * * * * * *
808346 TATACTCCCTGAAAAGAATAGGGTGTGAACCCGTTGTCAGAAGAATGTTCAAGTTC
1 TATACTCCCTGAAGCG-AGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTC
* *
808402 TATACTCCCTGAAGCGAGAGGGAGCGAACCCGTTCGCAGAAGATTGCTCGAGTTC
1 TATACTCCCTGAAGCGAGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTC
* * * * * *
808457 TATACTCCCTAAAAG-GAATAAGGAGTGAACTCGTTCGCAGAAGATTGTTCGAGTTC
1 TATACTCCCT-GAAGCG-AGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTC
* **
808513 TATACTCCCTGAAGCGAGAGGGAGCGAACCCATTTACAGAAGATTGTTCGAGTTC
1 TATACTCCCTGAAGCGAGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTC
* ** *
808568 TATACTCCCTGAAGCGAGAGGGAGCGAACCCATTTACAGAAGATTGTTCGATTTC
1 TATACTCCCTGAAGCGAGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTC
* **
808623 TATACTCCCTGAAGCG-GTAGGGAGCGAACCTGTTTTCAGAAGATT
1 TATACTCCCTGAAGCGAG-AGGGAGCGAACCCGTTGGCAGAAGATT
808668 TTTCAAGTCT
Statistics
Matches: 1019, Mismatches: 166, Indels: 41
0.83 0.14 0.03
Matches are distributed among these distances:
53 40 0.04
54 12 0.01
55 619 0.61
56 346 0.34
57 2 0.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (55 bp):
TATACTCCCTGAAGCGAGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTTC
Found at i:807652 original size:111 final size:110
Alignment explanation
Indices: 807426--808667 Score: 1361
Period size: 111 Copynumber: 11.2 Consensus size: 110
807416 TGAAGGGAAT
* * * * *
807426 AGGGAGCGAACCCGTTGGCAGAAGAATGTTAGAGTTTTATACTCCCTGAAGCG-AGAGGGAACGA
1 AGGGAGCGAACCCGTTCGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAG-GAAGAGGGAGCGA
* * *
807490 ACCCGTTCGCAGAAGATTGTTTGAGTTCTATACTCCCTGAAAAGAAT
65 ACCCGTTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAAAG-AG
* * * *
807537 AGGGAGTGAACCCGTTCGCTGAAGATTGTTCGAGTTCTATACTCCCTGAAAGGAATATGGAGCGA
1 AGGGAGCGAACCCGTTCGCAGAAGATTGTTCGAGTTCTATACTCCCTG-AAGGAAGAGGGAGCGA
* ***
807602 ACCCGTTGGCAGAAGAATGTTCGAGTTCTATACTCCCTGAGCTGAG
65 ACCCGTTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAAAGAG
* * *
807648 AGGGAGCGAACCCATTCGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAAAGAATAGGGAGCGA
1 AGGGAGCGAACCCGTTCGCAGAAGATTGTTCGAGTTCTATACTCCCTG-AAGGAAGAGGGAGCGA
* * *
807713 ACCCGTTGGTAGAATATTGTTCGAGTTCTATACTCCCTAAAAAGA-
65 ACCCGTTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAAAGAG
** * * * * *
807758 ATAG-GCGAACCCGTTGGCAGAAGAATGTTTGAGTTCTATACTCCCTGTAGCAAGAGGGAGCGAA
1 AGGGAGCGAACCCGTTCGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGGAAGAGGGAGCGAA
* ** * * *
807822 GCCGTTTTCAGAAGATTATTCGAGTTCCATACTCCCTGAAGCA-AG
66 CCCGTTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAA-AAGAG
* * * * * *
807867 AGGGAGAGAACTCGTTGGCAGAAGAATGTTCGAGTTCTATACTCCTTGAAGCAAGAGGGAGCGAA
1 AGGGAGCGAACCCGTTCGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGGAAGAGGGAGCGAA
* * *
807932 CCCGTTGGCAGAAGATTGTTCGAGTT-TCATGCTCCTTGAAGCA-AG
66 CCCGTTGGCAGAAGATTGTTCGAGTTCT-ATACTCCCTGAA-AAGAG
* * * *
807977 AGGTAGCGAACCCGTTCGCAGAAGATTGTTCGAGTTCCATACTCCCTGAAGAAAGAGGGAGTGAA
1 AGGGAGCGAACCCGTTCGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGGAAGAGGGAGCGAA
* * * * *
808042 CACGTTGGTATAAGATTATTCGAGTTCTATACTCCCT-AAAAGAAT
66 CCCGTTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAAAG-AG
* * * *
808087 AGGGAGCGAACCCGTTAGTAGAAGATTGTTCGAGTTAC-ATACTCCCTGAAGCAAGAGAGAGCGA
1 AGGGAGCGAACCCGTTCGCAGAAGATTGTTCGAGTT-CTATACTCCCTGAAGGAAGAGGGAGCGA
* * *
808151 ACCCGTTGGCAGAAGACTATTCGAGTTCTATACTCCCTGAAAAGAAT
65 ACCCGTTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAAAG-AG
* * * * * * * *
808198 AGGGAGTGAACCCGTTAGTAGAAGATTGTTTGAGTTCCATACTCCCTAAAGCAAGAGGGAGCAAA
1 AGGGAGCGAACCCGTTCGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGGAAGAGGGAGCGAA
* *
808263 CCCGTTGGCAGAAGAATGTTCGAGTTCTATACTCCCTGAAAAGAAT
66 CCCGTTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAAAG-AG
* * * * * *
808309 AGGGAGCGAACCCGTTCGCAGAATATTATTCGAGTTCTATACTCCCTGAAAAGAATAGGGTGTGA
1 AGGGAGCGAACCCGTTCGCAGAAGATTGTTCGAGTTCTATACTCCCTG-AAGGAAGAGGGAGCGA
* * * **
808374 ACCCGTTGTCAGAAGAATGTTCAAGTTCTATACTCCCTGAAGCGAG
65 ACCCGTTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAAAGAG
* * * * *
808420 AGGGAGCGAACCCGTTCGCAGAAGATTGCTCGAGTTCTATACTCCCTAAAAGGAATAAGGAGTGA
1 AGGGAGCGAACCCGTTCGCAGAAGATTGTTCGAGTTCTATACTCCCT-GAAGGAAGAGGGAGCGA
* * **
808485 ACTCGTTCGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCGAG
65 ACCCGTTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAAAGAG
* **
808531 AGGGAGCGAACCCATTTACAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCG-AGAGGGAGCGA
1 AGGGAGCGAACCCGTTCGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAG-GAAGAGGGAGCGA
* ** * **
808595 ACCCATTTACAGAAGATTGTTCGATTTCTATACTCCCTGAAGCG-G
65 ACCCGTTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAAAGAG
* **
808640 TAGGGAGCGAACCTGTTTTCAGAAGATT
1 -AGGGAGCGAACCCGTTCGCAGAAGATT
808668 TTTCAAGTCT
Statistics
Matches: 973, Mismatches: 142, Indels: 33
0.85 0.12 0.03
Matches are distributed among these distances:
108 47 0.05
109 45 0.05
110 345 0.35
111 437 0.45
112 99 0.10
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (110 bp):
AGGGAGCGAACCCGTTCGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGGAAGAGGGAGCGAA
CCCGTTGGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAAAGAG
Found at i:807689 original size:167 final size:166
Alignment explanation
Indices: 807407--808667 Score: 1419
Period size: 167 Copynumber: 7.6 Consensus size: 166
807397 TAACTCAACA
* * * * *
807407 TATACACCCTGAAGGGAATAGGGAGCGAACCCGTTGGCAGAAGAATGTTAGAGTTTTATACTCCC
1 TATACTCCCTGAAAGGAAGAGGGAGCGAACCCGTTGGCAGAAGAATGTTCGAGTTCTATACTCCC
* *
807472 TGAAGCGAGAGGGAACGAACCCGTTCGCAGAAGATTGTTTGAGTTCTATACTCCCTGAAAAGAAT
66 TGAAGCGAGAGGGAGCGAACCCGTTCGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAAAGAAT
807537 AGGGAGTGAACCCGTTCGCTGAAGATTGTTCGAGTTC
131 AGGGAGTGAACCCGTT-GCTGAAGATTGTTCGAGTTC
* *
807574 TATACTCCCTGAAAGGAATATGGAGCGAACCCGTTGGCAGAAGAATGTTCGAGTTCTATACTCCC
1 TATACTCCCTGAAAGGAAGAGGGAGCGAACCCGTTGGCAGAAGAATGTTCGAGTTCTATACTCCC
*
807639 TG-AGCTGAGAGGGAGCGAACCCATTCGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAAAGAA
66 TGAAGC-GAGAGGGAGCGAACCCGTTCGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAAAGAA
* * *
807703 TAGGGAGCGAACCCGTTGGTAGAATATTGTTCGAGTTC
130 TAGGGAGTGAACCCGTTGCT-GAAGATTGTTCGAGTTC
* * * *
807741 TATACTCCCTAAAAAGAATA--G-GCGAACCCGTTGGCAGAAGAATGTTTGAGTTCTATACTCCC
1 TATACTCCCTGAAAGGAAGAGGGAGCGAACCCGTTGGCAGAAGAATGTTCGAGTTCTATACTCCC
* * * ** * *
807803 TGTAGCAAGAGGGAGCGAAGCCGTTTTCAGAAGATTATTCGAGTTCCATACTCCCTG--AAGCAA
66 TGAAGCGAGAGGGAGCGAACCCGTTCGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAAAG-AA
* * * * *
807866 GAGGGAGAGAACTCGTTGGCAGAAGAATGTTCGAGTTC
130 TAGGGAGTGAACCCGTT-GCTGAAGATTGTTCGAGTTC
* * * *
807904 TATACTCCTTG-AAGCAAGAGGGAGCGAACCCGTTGGCAGAAGATTGTTCGAGTT-TCATGCTCC
1 TATACTCCCTGAAAGGAAGAGGGAGCGAACCCGTTGGCAGAAGAATGTTCGAGTTCT-ATACTCC
* * * * *
807967 TTGAAGCAAGAGGTAGCGAACCCGTTCGCAGAAGATTGTTCGAGTTCCATACTCCCTGAAGA-AA
65 CTGAAGCGAGAGGGAGCGAACCCGTTCGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAAAGAA
* * * * *
808031 GAGGGAGTGAACACGTTGGTATAAGATTATTCGAGTTC
130 TAGGGAGTGAACCCGTTGCT-GAAGATTGTTCGAGTTC
* * * * *
808069 TATACTCCCT-AAAAGAATAGGGAGCGAACCCGTTAGTAGAAGATTGTTCGAGTTAC-ATACTCC
1 TATACTCCCTGAAAGGAAGAGGGAGCGAACCCGTTGGCAGAAGAATGTTCGAGTT-CTATACTCC
* * * * *
808132 CTGAAGCAAGAGAGAGCGAACCCGTTGGCAGAAGACTATTCGAGTTCTATACTCCCTGAAAAGAA
65 CTGAAGCGAGAGGGAGCGAACCCGTTCGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAAAGAA
*
808197 TAGGGAGTGAACCCGTTAG-TAGAAGATTGTTTGAGTTC
130 TAGGGAGTGAACCCGTT-GCT-GAAGATTGTTCGAGTTC
* * *
808235 CATACTCCCT-AAAGCAAGAGGGAGCAAACCCGTTGGCAGAAGAATGTTCGAGTTCTATACTCCC
1 TATACTCCCTGAAAGGAAGAGGGAGCGAACCCGTTGGCAGAAGAATGTTCGAGTTCTATACTCCC
** * * *
808299 TGAAAAGAATAGGGAGCGAACCCGTTCGCAGAATATTATTCGAGTTCTATACTCCCTGAAAAGAA
66 TGAAGCG-AGAGGGAGCGAACCCGTTCGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAAAGAA
* * * *
808364 TAGGGTGTGAACCCGTTGTCAGAAGAATGTTCAAGTTC
130 TAGGGAGTGAACCCGTTG-CTGAAGATTGTTCGAGTTC
* * *
808402 TATACTCCCTG-AAGCG-AGAGGGAGCGAACCCGTTCGCAGAAGATTGCTCGAGTTCTATACTCC
1 TATACTCCCTGAAAG-GAAGAGGGAGCGAACCCGTTGGCAGAAGAATGTTCGAGTTCTATACTCC
* * * * * **
808465 CTAAAAG-GAATAAGGAGTGAACTCGTTCGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAGCG
65 CT-GAAGCG-AGAGGGAGCGAACCCGTTCGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAAAG
* * * * *
808529 -AGAGGGAGCGAACCCATTTACAGAAGATTGTTCGAGTTC
128 AATAGGGAGTGAACCC-GTTGCTGAAGATTGTTCGAGTTC
* ** * *
808568 TATACTCCCTG-AAGCG-AGAGGGAGCGAACCCATTTACAGAAGATTGTTCGATTTCTATACTCC
1 TATACTCCCTGAAAG-GAAGAGGGAGCGAACCCGTTGGCAGAAGAATGTTCGAGTTCTATACTCC
* **
808631 CTGAAGCG-GTAGGGAGCGAACCTGTTTTCAGAAGATT
65 CTGAAGCGAG-AGGGAGCGAACCCGTTCGCAGAAGATT
808668 TTTCAAGTCT
Statistics
Matches: 940, Mismatches: 127, Indels: 56
0.84 0.11 0.05
Matches are distributed among these distances:
162 8 0.01
163 40 0.04
164 90 0.10
165 253 0.27
166 187 0.20
167 360 0.38
168 2 0.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (166 bp):
TATACTCCCTGAAAGGAAGAGGGAGCGAACCCGTTGGCAGAAGAATGTTCGAGTTCTATACTCCC
TGAAGCGAGAGGGAGCGAACCCGTTCGCAGAAGATTGTTCGAGTTCTATACTCCCTGAAAAGAAT
AGGGAGTGAACCCGTTGCTGAAGATTGTTCGAGTTC
Found at i:808959 original size:6 final size:6
Alignment explanation
Indices: 808948--808981 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
808938 GCTTGTGATC
*
808948 ATGTAT ATGTAT ATGTAT ATGTAT ATATAT ATGT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGT
808982 TAGATTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (6 bp):
ATGTAT
Found at i:810569 original size:28 final size:28
Alignment explanation
Indices: 810472--810569 Score: 88
Period size: 28 Copynumber: 3.5 Consensus size: 28
810462 TGGTTGTATT
810472 ATGTTTACTATTTTTATATTTTAGCCTC
1 ATGTTTACTATTTTTATATTTTAGCCTC
* * *** **** *
810500 TTGTTTACTAATTTGGGAAAAAAGCCTG
1 ATGTTTACTATTTTTATATTTTAGCCTC
*
810528 ATGTTTACTTTTTTTATATTTTAGCCTC
1 ATGTTTACTATTTTTATATTTTAGCCTC
*
810556 ATGTTTAATATTTT
1 ATGTTTACTATTTT
810570 ATGCATGTTT
Statistics
Matches: 47, Mismatches: 23, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.24, C:0.11, G:0.11, T:0.53
Consensus pattern (28 bp):
ATGTTTACTATTTTTATATTTTAGCCTC
Found at i:812131 original size:16 final size:16
Alignment explanation
Indices: 812110--812145 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
812100 TATGTTTGGC
812110 TTGAAAGTTGACAAAG
1 TTGAAAGTTGACAAAG
*
812126 TTGAAAGTTGGCAAAG
1 TTGAAAGTTGACAAAG
812142 TTGA
1 TTGA
812146 CATCTTTGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.39, C:0.06, G:0.28, T:0.28
Consensus pattern (16 bp):
TTGAAAGTTGACAAAG
Found at i:812208 original size:40 final size:39
Alignment explanation
Indices: 812146--812234 Score: 108
Period size: 40 Copynumber: 2.3 Consensus size: 39
812136 GCAAAGTTGA
* *
812146 CATCTTTGGTTGGTGACTAACTTGTACACATTG-GAAAATT
1 CATCTTTGGTAGGTGACCAACTTGTACACA-TGAG-AAATT
* * *
812186 CATCTTTGGTAGGTGGCCAACTTGTGCACATGAGAATTT
1 CATCTTTGGTAGGTGACCAACTTGTACACATGAGAAATT
812225 CATCTTTGGT
1 CATCTTTGGT
812235 CCCTAAAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
39 16 0.37
40 27 0.63
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.37
Consensus pattern (39 bp):
CATCTTTGGTAGGTGACCAACTTGTACACATGAGAAATT
Found at i:814757 original size:74 final size:74
Alignment explanation
Indices: 814667--814808 Score: 212
Period size: 74 Copynumber: 1.9 Consensus size: 74
814657 GGAAGAGCAA
* * * *
814667 TTACCCCTCCCAACTTTGATGGTCTAACTACATTTTAGGTTATTGATAATTATAAAACCATTATA
1 TTACCCCTCCCAACTTTGATGATCTAACTACATTTTAAGTCACTGATAATTATAAAACCATTATA
814732 ATTAAGCTT
66 ATTAAGCTT
* * * *
814741 TTACCCCTCTCAACTTTGATGATCTAATTACATTTTAAGTCACTGATTATTATAAAATCATTATA
1 TTACCCCTCCCAACTTTGATGATCTAACTACATTTTAAGTCACTGATAATTATAAAACCATTATA
814806 ATT
66 ATT
814809 GAGCCCTTGT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
74 60 1.00
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (74 bp):
TTACCCCTCCCAACTTTGATGATCTAACTACATTTTAAGTCACTGATAATTATAAAACCATTATA
ATTAAGCTT
Found at i:817336 original size:26 final size:26
Alignment explanation
Indices: 817307--817356 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
817297 TCTGACGTGA
*
817307 CAGTTTCTAGAAGGTCCAGTCAGCAG
1 CAGTTTCTAGAAGATCCAGTCAGCAG
*
817333 CAGTTTCTAGAAGATCTAGTCAGC
1 CAGTTTCTAGAAGATCCAGTCAGC
817357 GCGCCTTCTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (26 bp):
CAGTTTCTAGAAGATCCAGTCAGCAG
Found at i:819174 original size:74 final size:74
Alignment explanation
Indices: 818997--819175 Score: 204
Period size: 74 Copynumber: 2.4 Consensus size: 74
818987 CAATTACTCC
* * * * *
818997 TCCCAACTTTGATGGTCTAATT-TCATTTTGGGTCATTGATAATTATAAAATCATTATAATTAAG
1 TCCCAAATTTGATGATATAATTAT-ATTTTAGGTCACTGATAATTATAAAATCATTATAATTAAG
*
819061 CATTTACCCT
65 CACTTACCCT
* *
819071 TCCCAAATTTGATGATCTAATTATATTTTAGGTCACTGATAATTATAAAATCATTATAATTGAGC
1 TCCCAAATTTGATGATATAATTATATTTTAGGTCACTGATAATTATAAAATCATTATAATTAAGC
*
819136 CCTTATCCC-
66 ACTTA-CCCT
*
819145 TCCTCAAATTTTGTTG-TATAATTAT-TTTTAG
1 TCC-CAAA-TTTGATGATATAATTATATTTTAG
819176 ATCATTGTAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
74 70 0.76
75 16 0.17
76 6 0.07
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.43
Consensus pattern (74 bp):
TCCCAAATTTGATGATATAATTATATTTTAGGTCACTGATAATTATAAAATCATTATAATTAAGC
ACTTACCCT
Found at i:820880 original size:19 final size:20
Alignment explanation
Indices: 820846--820890 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
820836 CAGCTAACAA
* *
820846 CTAACATCTAACAACCGTTC
1 CTAACAACTAACAACCATTC
820866 CTAACAACT-ACAACCATTC
1 CTAACAACTAACAACCATTC
820885 CTAACA
1 CTAACA
820891 GCTTTATCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.40, C:0.36, G:0.02, T:0.22
Consensus pattern (20 bp):
CTAACAACTAACAACCATTC
Found at i:825558 original size:19 final size:20
Alignment explanation
Indices: 825524--825571 Score: 80
Period size: 19 Copynumber: 2.5 Consensus size: 20
825514 CAACTAACAA
*
825524 CTAACATCTAACAACCGTTC
1 CTAACAGCTAACAACCGTTC
825544 CTAACAGCT-ACAACCGTTC
1 CTAACAGCTAACAACCGTTC
825563 CTAACAGCT
1 CTAACAGCT
825572 TTATCATTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
19 19 0.70
20 8 0.30
ACGTcount: A:0.33, C:0.35, G:0.08, T:0.23
Consensus pattern (20 bp):
CTAACAGCTAACAACCGTTC
Found at i:825586 original size:19 final size:19
Alignment explanation
Indices: 825564--825603 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
825554 CAACCGTTCC
*
825564 TAACAGCTTTATCATTCAA
1 TAACAGCTTCATCATTCAA
825583 TAACAGCTTCATCATTCAA
1 TAACAGCTTCATCATTCAA
825602 TA
1 TA
825604 GTCACCTACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.35
Consensus pattern (19 bp):
TAACAGCTTCATCATTCAA
Found at i:829277 original size:29 final size:27
Alignment explanation
Indices: 829236--829315 Score: 88
Period size: 29 Copynumber: 2.8 Consensus size: 27
829226 ACTTTTTAAA
*
829236 AAAAAACCCTAAATTTTTCTAAAATATT
1 AAAAAACCCTAAATTTTT-TAAAATATC
*
829264 AAAAAACCCATAAAATTTTTAAAATATC
1 AAAAAACCC-TAAATTTTTTAAAATATC
* *
829292 ATAAAACCCCCTAAATTTTATAAA
1 A-AAAA-ACCCTAAATTTTTTAAA
829316 CCCCCAAAAC
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
28 18 0.41
29 23 0.52
30 3 0.07
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (27 bp):
AAAAAACCCTAAATTTTTTAAAATATC
Found at i:829286 original size:28 final size:28
Alignment explanation
Indices: 829236--829300 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
829226 ACTTTTTAAA
* *
829236 AAAAAACCCTAAATTTTTCTAAAATATT
1 AAAAAACCCTAAAATTTTCTAAAATATC
829264 AAAAAACCCATAAAATTTT-TAAAATATC
1 AAAAAACCC-TAAAATTTTCTAAAATATC
*
829292 ATAAAACCC
1 AAAAAACCC
829301 CCTAAATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
28 25 0.76
29 8 0.24
ACGTcount: A:0.54, C:0.17, G:0.00, T:0.29
Consensus pattern (28 bp):
AAAAAACCCTAAAATTTTCTAAAATATC
Found at i:831672 original size:31 final size:31
Alignment explanation
Indices: 831624--831692 Score: 120
Period size: 31 Copynumber: 2.2 Consensus size: 31
831614 TCGTAGATCT
831624 TCAACGAGGCCTCGGAGAATTTGTTTAGTCTA
1 TCAA-GAGGCCTCGGAGAATTTGTTTAGTCTA
*
831656 TCAAGAGGCCTTGGAGAATTTGTTTAGTCTA
1 TCAAGAGGCCTCGGAGAATTTGTTTAGTCTA
831687 TCAAGA
1 TCAAGA
831693 ACCAAGTCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
31 32 0.89
32 4 0.11
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (31 bp):
TCAAGAGGCCTCGGAGAATTTGTTTAGTCTA
Found at i:837864 original size:25 final size:26
Alignment explanation
Indices: 837811--837864 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
837801 AACCTTTCTC
*
837811 TTTTATTTTACTTTTCAAGTTTTTAT
1 TTTTATTTTACTTTTCAAGTTTGTAT
*
837837 TTTTCTTTTA-TTTTCAAGCTTTGT-T
1 TTTTATTTTACTTTTCAAG-TTTGTAT
837862 TTT
1 TTT
837865 AAATATGCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.15, C:0.09, G:0.06, T:0.70
Consensus pattern (26 bp):
TTTTATTTTACTTTTCAAGTTTGTAT
Found at i:838028 original size:18 final size:19
Alignment explanation
Indices: 838005--838041 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
837995 CTGCGCTTAT
838005 TTTTCAAAATCAAA-ATAG
1 TTTTCAAAATCAAAGATAG
838023 TTTTCAAAATCAAAGATAG
1 TTTTCAAAATCAAAGATAG
838042 ACTTTGGTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.49, C:0.11, G:0.08, T:0.32
Consensus pattern (19 bp):
TTTTCAAAATCAAAGATAG
Found at i:843754 original size:25 final size:26
Alignment explanation
Indices: 843691--843754 Score: 69
Period size: 25 Copynumber: 2.5 Consensus size: 26
843681 AGTTTTATTG
*
843691 AAGCTTTCTCTTTTATTTTACTTTTC
1 AAGCTTTCTTTTTTATTTTACTTTTC
* *
843717 AAG-TTTTTATTTTTCTTTTA-TTTTC
1 AAGCTTTCT-TTTTTATTTTACTTTTC
*
843742 AAGCTTTGTTTTT
1 AAGCTTTCTTTTT
843755 AAATATGCTA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
25 16 0.50
26 16 0.50
ACGTcount: A:0.16, C:0.12, G:0.06, T:0.66
Consensus pattern (26 bp):
AAGCTTTCTTTTTTATTTTACTTTTC
Found at i:851266 original size:17 final size:17
Alignment explanation
Indices: 851244--851287 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
851234 AAATAGGTCA
851244 ACATCCTTTTCAAAACC
1 ACATCCTTTTCAAAACC
851261 ACATCCTTTTCAAAACC
1 ACATCCTTTTCAAAACC
* *
851278 GCATCATTTT
1 ACATCCTTTT
851288 TTTTTAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.32, C:0.32, G:0.02, T:0.34
Consensus pattern (17 bp):
ACATCCTTTTCAAAACC
Found at i:856458 original size:36 final size:36
Alignment explanation
Indices: 856418--856534 Score: 99
Period size: 36 Copynumber: 3.1 Consensus size: 36
856408 ACTCAAGATT
*
856418 GTTTTTCTTAAAACAAGATTTGTCTCACTTGAGACA
1 GTTTTTCTTAAAACAAGATTTGTCTCACTTAAGACA
* * * * * **
856454 GTTTTTACTCGAAACAATAAGATTTATTTCACTCAAGATT
1 GTTTTT-CT--TAA-AACAAGATTTGTCTCACTTAAGACA
* * *
856494 GTTTTTCTTAAAACAAGATTTGTCTCGCTTTAGACG
1 GTTTTTCTTAAAACAAGATTTGTCTCACTTAAGACA
856530 GTTTT
1 GTTTT
856535 CACTCGAAAG
Statistics
Matches: 60, Mismatches: 17, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
36 28 0.47
37 4 0.07
39 4 0.07
40 24 0.40
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.42
Consensus pattern (36 bp):
GTTTTTCTTAAAACAAGATTTGTCTCACTTAAGACA
Found at i:856559 original size:76 final size:75
Alignment explanation
Indices: 856338--856575 Score: 284
Period size: 76 Copynumber: 3.1 Consensus size: 75
856328 ATCTCACTAG
* * * * *
856338 AGATTGTTTTTCTTAAAAC-GGACATTGTCTCACTTGAGACTGTGTTACTCGAAAGAAGACATTT
1 AGATTGTTTTTCTTAAAACAAGA-TTTGTCTCACTTGAGACAGTTTTACTCGAAAGAAGGCATTT
*
856402 CATTTGACTCA
65 CATTTCACTCA
* *
856413 AGATTGTTTTTCTTAAAACAAGATTTGTCTCACTTGAGACAGTTTTTACTCGAAACAATAAG-AT
1 AGATTGTTTTTCTTAAAACAAGATTTGTCTCACTTGAGACAG-TTTTACTCGAAA-GA-AGGCAT
856477 TT-ATTTCACTCA
63 TTCATTTCACTCA
* * * *
856489 AGATTGTTTTTCTTAAAACAAGATTTGTCTCGCTTTAGACGGTTTTCACTCGAAAGAAGGCTTTT
1 AGATTGTTTTTCTTAAAACAAGATTTGTCTCACTTGAGACAGTTTT-ACTCGAAAGAAGGCATTT
*
856554 CATTTCGCTCA
65 CATTTCACTCA
*
856565 AGATTATTTTT
1 AGATTGTTTTT
856576 AAAGAAGATT
Statistics
Matches: 140, Mismatches: 16, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
74 2 0.01
75 44 0.31
76 88 0.63
77 5 0.04
78 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.39
Consensus pattern (75 bp):
AGATTGTTTTTCTTAAAACAAGATTTGTCTCACTTGAGACAGTTTTACTCGAAAGAAGGCATTTC
ATTTCACTCA
Found at i:856637 original size:39 final size:39
Alignment explanation
Indices: 856578--857252 Score: 699
Period size: 39 Copynumber: 18.0 Consensus size: 39
856568 TTATTTTTAA
856578 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * *
856617 AAAATATTTTATCTCGCTTGAGACAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
*
856656 AGAAGATTTTA--TCGCTTGAGATAGTTTCTCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* *
856693 AGAAGATTTTATCTCGCTTGAGGTAGTTTCCCTCAAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* *
856732 AGAAGATTTTATCTCGCTTGAGGTAGTTTCCCTCAAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
856771 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
*
856810 AGAATATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
*
856849 AAAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* *
856888 AGAAGATTTTATCTCGCTTGAGATAGTTTCCGTCGAAAT
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
*
856927 AGAAGATTCTATCTCGCTTGAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * *
856966 AGTAGATTTTATCTCGCTTGAGACAGTTTCCCTTGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * * * ** *
857005 A-AA-ATTTTGTCT-GCCTTTAGACATTTTTTCTTGAAAC
1 AGAAGATTTTATCTCG-CTTGAGATAGTTTCCCTCGAAAC
* *
857042 A-AA-A----A-CT---TTGA-AAATGTTTCCCTTGAAAC
1 AGAAGATTTTATCTCGCTTGAGATA-GTTTCCCTCGAAAC
* * * * *
857071 A-AA-ATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * * *
857108 --AAG-TTTTGTCTCCCTTGAGATAGTTTCTCTTGAAA-
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * *
857143 A-AAG-TTTTGTCTCCCTTGAGATAGTTTCCCTTGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * * * * *
857180 --AAG-CTTTGTCTCCCTTGAGACAGTTTCTCTTGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * * *
857216 --AA-ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
857252 A
1 A
857253 CCAATCTTTG
Statistics
Matches: 570, Mismatches: 48, Indels: 38
0.87 0.07 0.06
Matches are distributed among these distances:
28 2 0.00
29 18 0.03
32 2 0.00
34 2 0.00
36 133 0.23
37 83 0.15
38 3 0.01
39 327 0.57
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (39 bp):
AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
Found at i:857122 original size:36 final size:36
Alignment explanation
Indices: 857057--857252 Score: 293
Period size: 36 Copynumber: 5.4 Consensus size: 36
857047 CTTTGAAAAT
*
857057 GTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACA
1 GTTTCCCTTGAAAC-AAGTTTTGTCTCCCTTGAGACA
* *
857094 GTTTCTCTTGAAACAAGTTTTGTCTCCCTTGAGATA
1 GTTTCCCTTGAAACAAGTTTTGTCTCCCTTGAGACA
* * *
857130 GTTTCTCTTGAAAAAAGTTTTGTCTCCCTTGAGATA
1 GTTTCCCTTGAAACAAGTTTTGTCTCCCTTGAGACA
*
857166 GTTTCCCTTGAAACAAGCTTTGTCTCCCTTGAGACA
1 GTTTCCCTTGAAACAAGTTTTGTCTCCCTTGAGACA
* * *
857202 GTTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACA
1 GTTTCCCTTGAAACAAGTTTTGTCTCCCTTGAGACA
857238 GTTTCCCTTGAAACA
1 GTTTCCCTTGAAACA
857253 CCAATCTTTG
Statistics
Matches: 146, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
36 133 0.91
37 13 0.09
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.38
Consensus pattern (36 bp):
GTTTCCCTTGAAACAAGTTTTGTCTCCCTTGAGACA
Found at i:857303 original size:66 final size:66
Alignment explanation
Indices: 856983--857329 Score: 236
Period size: 66 Copynumber: 5.1 Consensus size: 66
856973 TTTATCTCGC
* * ** *
856983 TTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTGC-CTTTAGACATTTTTTCTTGAAACA-AAA
1 TTGAGACAGTTTCCCTTGAAAC-AAATTTTGTCT-CTCTTAAGACAGTTTCCCTTGAAACACCAA
*
857046 ACT
64 TCT
* * * * *
857049 TTGA-AAATGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAAGTT
1 TTGAGACA-GTTTCCCTTGAAAC-AAATTTTGTCTCTCTTAAGACAGTTTCCCTTGAAAC-A--C
***
857113 TTGTCT
61 CAATCT
* * * * *
857119 CCCTTGAGATAGTTTCTCTTGAAA-AAAGTTTTGTCTCCCTTGAGATAGTTTCCCTTGAAACAAG
1 ---TTGAGACAGTTTCCCTTGAAACAAA-TTTTGTCTCTCTTAAGACAGTTTCCCTTGAAAC-A-
***
857183 CTTTGTCT
60 C-CAATCT
* *
857191 CCCTTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACCA
1 ---TTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTAAGACAGTTTCCCTTGAAACACCA
857256 ATCT
63 ATCT
** * * *
857260 TTGAGATC-GTTTCCCTTGAAATGAATTTTTTCTCTCTTAAGACAGTTTCCCTTGAATCATCAAT
1 TTGAGA-CAGTTTCCCTTGAAACAAATTTTGTCTCTCTTAAGACAGTTTCCCTTGAAACACCAAT
857324 CT
65 CT
857326 TTGA
1 TTGA
857330 ATTTGTTTCT
Statistics
Matches: 240, Mismatches: 27, Indels: 28
0.81 0.09 0.09
Matches are distributed among these distances:
65 3 0.01
66 111 0.46
67 2 0.01
69 3 0.01
70 3 0.01
71 4 0.02
72 93 0.39
73 19 0.08
74 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.39
Consensus pattern (66 bp):
TTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTAAGACAGTTTCCCTTGAAACACCAATC
T
Found at i:857373 original size:66 final size:66
Alignment explanation
Indices: 857122--857384 Score: 226
Period size: 66 Copynumber: 3.9 Consensus size: 66
857112 TTTGTCTCCC
* * * * *
857122 TTGAGATAGTTTCTCTTGAAA-AAAGTTTTGTCTCCCTTGAGATAGTTTCCCTTGAAACAAGCTT
1 TTGAGATCGTTTCTCTTGAAACAAA-TTTTATCTCTCTTGAGACAGTTTCCCTTGAAAC-A-C-C
**
857186 TGTCT
62 AATCT
*
857191 CCCTTGAGA-CAGTTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACC
1 ---TTGAGATC-GTTTCTCTTGAAACAAATTTTATCTCTCTTGAGACAGTTTCCCTTGAAACACC
857255 AATCT
62 AATCT
* ** * * * *
857260 TTGAGATCGTTTCCCTTGAAATGAATTTTTTCTCTCTTAAGACAGTTTCCCTTGAATCATCAATC
1 TTGAGATCGTTTCTCTTGAAACAAATTTTATCTCTCTTGAGACAGTTTCCCTTGAAACACCAATC
857325 T
66 T
* * * * * * *
857326 TTGA-ATTTGTTTCTCTCGAAACAAATTTTATCTCACTTGGGATAGTTTCTCTTTAAACA
1 TTGAGA-TCGTTTCTCTTGAAACAAATTTTATCTCTCTTGAGACAGTTTCCCTTGAAACA
857385 AATTTCTTTT
Statistics
Matches: 161, Mismatches: 26, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
65 1 0.01
66 101 0.63
67 1 0.01
69 3 0.02
70 1 0.01
71 1 0.01
72 50 0.31
73 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.40
Consensus pattern (66 bp):
TTGAGATCGTTTCTCTTGAAACAAATTTTATCTCTCTTGAGACAGTTTCCCTTGAAACACCAATC
T
Found at i:857799 original size:91 final size:91
Alignment explanation
Indices: 857641--858550 Score: 1586
Period size: 91 Copynumber: 10.0 Consensus size: 91
857631 GATAAACCAA
** *
857641 TCAACATTTTTAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCGTA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATA
*
857706 ATGAGAATAACTTGTTCAACCTTGGT
66 ATGAGAAGAACTTGTTCAACCTTGGT
*
857732 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAATTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATA
857797 ATGAGAAGAACTTGTTCAACCTTGGT
66 ATGAGAAGAACTTGTTCAACCTTGGT
* * *
857823 TCAAGATTTCCAGTTGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAAAAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATA
857888 ATGAGAAGAACTTGTTCAACCTTGGT
66 ATGAGAAGAACTTGTTCAACCTTGGT
*
857914 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAAAGAGGGAGAAGAAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATA
* *
857979 ATGAGAAGAACTTGTTCAAACTTGGC
66 ATGAGAAGAACTTGTTCAACCTTGGT
858005 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATA
858070 ATGAGAAGAACTTGTTCAACCTTGGT
66 ATGAGAAGAACTTGTTCAACCTTGGT
*
858096 TCAAGATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATA
858161 ATGAGAAGAACTTGTTCAACCTTGGT
66 ATGAGAAGAACTTGTTCAACCTTGGT
*
858187 TCAAGATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATA
858252 ATGAGAAGAACTTGTTCAACCTTGGT
66 ATGAGAAGAACTTGTTCAACCTTGGT
*
858278 TCAGCATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATA
858343 ATGAGAAGAACTTGTTCAACCTTGGT
66 ATGAGAAGAACTTGTTCAACCTTGGT
* * *
858369 TCAAGATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAAAGAGAGAGAAGAAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATA
**
858434 ATGAGAAGAACTTGTTCAACCTTGCA
66 ATGAGAAGAACTTGTTCAACCTTGGT
* * * * *
858460 TAAACATTTCCAGCGGGGAGTTCATAATGAGAATAACTCATCCGACGAGGGAGAAGAAGTTCATA
1 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATA
* *
858525 ATAAGAAGAACTTGTTCAACTTTGGT
66 ATGAGAAGAACTTGTTCAACCTTGGT
858551 GATTCCATCA
Statistics
Matches: 780, Mismatches: 39, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
91 780 1.00
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.25
Consensus pattern (91 bp):
TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATA
ATGAGAAGAACTTGTTCAACCTTGGT
Found at i:858450 original size:20 final size:20
Alignment explanation
Indices: 858387--858451 Score: 55
Period size: 20 Copynumber: 3.3 Consensus size: 20
858377 TCCAGTGGAG
858387 AGTTCATAATGAGAAGAACT
1 AGTTCATAATGAGAAGAACT
* **
858407 CA-TCCA-AA-GAGAGAGAAGA
1 -AGTTCATAATGAGA-AGAACT
858426 AGTTCATAATGAGAAGAACT
1 AGTTCATAATGAGAAGAACT
*
858446 TGTTCA
1 AGTTCA
858452 ACCTTGCATA
Statistics
Matches: 33, Mismatches: 7, Indels: 9
0.67 0.14 0.18
Matches are distributed among these distances:
18 5 0.15
19 9 0.27
20 14 0.42
21 5 0.15
ACGTcount: A:0.45, C:0.12, G:0.22, T:0.22
Consensus pattern (20 bp):
AGTTCATAATGAGAAGAACT
Found at i:866800 original size:23 final size:24
Alignment explanation
Indices: 866770--866814 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
866760 AAAATATAAG
866770 TTCAACAATCTTCCCAT-TTTTGA
1 TTCAACAATCTTCCCATATTTTGA
866793 TTCAACAATCTTCCCATATTTT
1 TTCAACAATCTTCCCATATTTT
866815 ATATAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.27, C:0.27, G:0.02, T:0.44
Consensus pattern (24 bp):
TTCAACAATCTTCCCATATTTTGA
Found at i:875455 original size:59 final size:59
Alignment explanation
Indices: 875392--875526 Score: 252
Period size: 59 Copynumber: 2.3 Consensus size: 59
875382 TGAGGTTTGA
*
875392 GTCACAGAGCTCAAACATTCATCTACAACACACAATACAACATCAATGATGAAGCTCGG
1 GTCACGGAGCTCAAACATTCATCTACAACACACAATACAACATCAATGATGAAGCTCGG
*
875451 GTCACGGAGCTCAAACATTCATCTACAACATACAATACAACATCAATGATGAAGCTCGG
1 GTCACGGAGCTCAAACATTCATCTACAACACACAATACAACATCAATGATGAAGCTCGG
875510 GTCACGGAGCTCAAACA
1 GTCACGGAGCTCAAACA
875527 CTTATCCATA
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 74 1.00
ACGTcount: A:0.39, C:0.27, G:0.16, T:0.19
Consensus pattern (59 bp):
GTCACGGAGCTCAAACATTCATCTACAACACACAATACAACATCAATGATGAAGCTCGG
Found at i:875552 original size:59 final size:59
Alignment explanation
Indices: 875392--875554 Score: 222
Period size: 59 Copynumber: 2.8 Consensus size: 59
875382 TGAGGTTTGA
* * *
875392 GTCACAGAGCTCAAACATTCATCTACAACACACAATACAACATCAATGATGAAGCTCGG
1 GTCACGGAGCTCAAACATTCATCCACAACACACAACACAACATCAATGATGAAGCTCGG
* * *
875451 GTCACGGAGCTCAAACATTCATCTACAACATACAATACAACATCAATGATGAAGCTCGG
1 GTCACGGAGCTCAAACATTCATCCACAACACACAACACAACATCAATGATGAAGCTCGG
* *
875510 GTCACGGAGCTCAAACACTT-ATCCATAACACATAAGCA-AACATCA
1 GTCACGGAGCTCAAACA-TTCATCCACAACACACAA-CACAACATCA
875555 TAGTGTAGTC
Statistics
Matches: 95, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
59 92 0.97
60 3 0.03
ACGTcount: A:0.40, C:0.27, G:0.13, T:0.19
Consensus pattern (59 bp):
GTCACGGAGCTCAAACATTCATCCACAACACACAACACAACATCAATGATGAAGCTCGG
Found at i:891706 original size:13 final size:13
Alignment explanation
Indices: 891688--891735 Score: 78
Period size: 13 Copynumber: 3.7 Consensus size: 13
891678 TGTGTCATAA
*
891688 ATTTATGACGTGC
1 ATTTATGACGCGC
891701 ATTTATGACGCGC
1 ATTTATGACGCGC
891714 ATTTATGACGCGC
1 ATTTATGACGCGC
*
891727 ATGTATGAC
1 ATTTATGAC
891736 TTACATTGCG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (13 bp):
ATTTATGACGCGC
Found at i:891820 original size:85 final size:85
Alignment explanation
Indices: 891714--892021 Score: 494
Period size: 85 Copynumber: 3.6 Consensus size: 85
891704 TATGACGCGC
*
891714 ATTTATGACGCGCATGTATGACTTACATTGCGCGTCATTGAAGCCCCCGTCATAAATTAAGATGA
1 ATTTATGACACGCATGTATGACTTACATTGCGCGTCATTGAAGCCCCCGTCATAAATTAAGATGA
* *
891779 CGCACATTTGAGCGTCATAA
66 CACACATTTGTGCGTCATAA
891799 ATTTATGACACGCATGTATGACTTACATTGCGCGTCATTGAAGCCCCCGTCATAAATTAAGATGA
1 ATTTATGACACGCATGTATGACTTACATTGCGCGTCATTGAAGCCCCCGTCATAAATTAAGATGA
891864 CACACATTTGTGCGTCATAA
66 CACACATTTGTGCGTCATAA
*
891884 ATTTATGACACGCATGTATGACTTACATTGCGCGTCATTGAAGCCCCCGTCATAAATCT--GCTT
1 ATTTATGACACGCATGTATGACTTACATTGCGCGTCATTGAAGCCCCCGTCATAAAT-TAAG-AT
* *
891947 GACATACATTTGTGTGTCATAA
64 GACACACATTTGTGCGTCATAA
* * * *
891969 ATTTATGACACGCATATATGACTTACATTGCGTGTCATTGAAGCACACGTCAT
1 ATTTATGACACGCATGTATGACTTACATTGCGCGTCATTGAAGCCCCCGTCAT
892022 TTAAAAAGAC
Statistics
Matches: 211, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
84 1 0.00
85 209 0.99
86 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (85 bp):
ATTTATGACACGCATGTATGACTTACATTGCGCGTCATTGAAGCCCCCGTCATAAATTAAGATGA
CACACATTTGTGCGTCATAA
Found at i:892076 original size:2 final size:2
Alignment explanation
Indices: 892069--892125 Score: 87
Period size: 2 Copynumber: 28.5 Consensus size: 2
892059 TTTCGGAAAT
* * *
892069 TA TA TA TA TA TA TA TA TA AA TA TA TA TA AA TA TA TC TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
892111 TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA T
892126 TGTAGATTGA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:893632 original size:12 final size:12
Alignment explanation
Indices: 893615--893645 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
893605 ATATATTGAT
893615 AATCAAATGAAA
1 AATCAAATGAAA
893627 AATCAAATGAAA
1 AATCAAATGAAA
*
893639 AAACAAA
1 AATCAAA
893646 CCCGGGATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.71, C:0.10, G:0.06, T:0.13
Consensus pattern (12 bp):
AATCAAATGAAA
Found at i:898167 original size:15 final size:15
Alignment explanation
Indices: 898142--898197 Score: 85
Period size: 15 Copynumber: 3.7 Consensus size: 15
898132 GATGCTTTCT
898142 TTTTCCTTCTTTGACG
1 TTTT-CTTCTTTGACG
898158 TTTTCTTCTTTGACG
1 TTTTCTTCTTTGACG
*
898173 TTTTCTTCTTAGACG
1 TTTTCTTCTTTGACG
*
898188 TTGTCTTCTT
1 TTTTCTTCTT
898198 ACCCCATGAA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.07, C:0.21, G:0.12, T:0.59
Consensus pattern (15 bp):
TTTTCTTCTTTGACG
Found at i:909216 original size:22 final size:20
Alignment explanation
Indices: 909184--909239 Score: 58
Period size: 22 Copynumber: 2.7 Consensus size: 20
909174 CCGGAAGGGG
* *
909184 GTATCGGTACCATAGTATGGTA
1 GTATCGATACCATAGTA-AG-A
*
909206 GTATCGATACCATGGTAAGA
1 GTATCGATACCATAGTAAGA
*
909226 GTATTGATACCATA
1 GTATCGATACCATA
909240 CAACATCGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 13 0.45
21 1 0.03
22 15 0.52
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.30
Consensus pattern (20 bp):
GTATCGATACCATAGTAAGA
Found at i:909235 original size:95 final size:94
Alignment explanation
Indices: 909107--909305 Score: 274
Period size: 95 Copynumber: 2.1 Consensus size: 94
909097 ATACTAACGA
* * * *
909107 GGTAGTATCGATAACATGGTAAGGGTATCGATACC-TGGCAACATCGAATCTAAAATTGGTATCT
1 GGTAGTATCGATAACATGGTAAGAGTATCGATACCAT-ACAACATCGAAGCTAAAATTGGTATCG
* *
909171 ATACCGGAAGGGGGTATCGGTACCATAGTAT
65 ATACCAG-AGGGGGTATCAGTACCATAGTAT
* * *
909202 GGTAGTATCGATACCATGGTAAGAGTATTGATACCATACAACATCGAAGCTAAAATTGGTATGGA
1 GGTAGTATCGATAACATGGTAAGAGTATCGATACCATACAACATCGAAGCTAAAATTGGTATCGA
909267 TACCAGAGGGGGTATCAGTACCATAGTAT
66 TACCAGAGGGGGTATCAGTACCATAGTAT
* *
909296 AGAAGTATCG
1 GGTAGTATCG
909306 GTACTAGGGT
Statistics
Matches: 92, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
94 30 0.33
95 61 0.66
96 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.26, T:0.26
Consensus pattern (94 bp):
GGTAGTATCGATAACATGGTAAGAGTATCGATACCATACAACATCGAAGCTAAAATTGGTATCGA
TACCAGAGGGGGTATCAGTACCATAGTAT
Found at i:909323 original size:94 final size:95
Alignment explanation
Indices: 909110--909329 Score: 266
Period size: 95 Copynumber: 2.3 Consensus size: 95
909100 CTAACGAGGT
* * * * * *
909110 AGTATCGATAACATGGTAAGGGTATCGATACC-TGGCAACATCGAATCTAAAATTGGTATCTATA
1 AGTATCGATACCAGGGTAAGAGTATCGATACCAT-ACAACATCGAAGCTAAAATTGGTATCGATA
* * * *
909174 CCGGAAGGGGGTATCGGTACCATAGTATGGT
65 CCAGAAGGGGGTATCAGTACCATAGTATAGA
* * *
909205 AGTATCGATACCATGGTAAGAGTATTGATACCATACAACATCGAAGCTAAAATTGGTATGGATAC
1 AGTATCGATACCAGGGTAAGAGTATCGATACCATACAACATCGAAGCTAAAATTGGTATCGATAC
909270 CAG-AGGGGGTATCAGTACCATAGTATAGA
66 CAGAAGGGGGTATCAGTACCATAGTATAGA
* *
909299 AGTATCGGTACTAGGGT-AGTAGTATCGATAC
1 AGTATCGATACCAGGGTAAG-AGTATCGATAC
909330 TATTGAGCTT
Statistics
Matches: 108, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
93 2 0.02
94 47 0.44
95 58 0.54
96 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (95 bp):
AGTATCGATACCAGGGTAAGAGTATCGATACCATACAACATCGAAGCTAAAATTGGTATCGATAC
CAGAAGGGGGTATCAGTACCATAGTATAGA
Found at i:909774 original size:45 final size:45
Alignment explanation
Indices: 909705--909919 Score: 385
Period size: 45 Copynumber: 4.8 Consensus size: 45
909695 TGAAAATAAT
* *
909705 AATGCATATGGGTGCATTATCAACAGAAAAGTATGCTATAGTTGA
1 AATGTATATGGGTACATTATCAACAGAAAAGTATGCTATAGTTGA
*
909750 AATGTATATGGGTACATTATCAACAGAAAAGTATCCTATAGTTGA
1 AATGTATATGGGTACATTATCAACAGAAAAGTATGCTATAGTTGA
* *
909795 AATGTATATGGGTACATTATCAAAAGAAAAGTATGATATAGTTGA
1 AATGTATATGGGTACATTATCAACAGAAAAGTATGCTATAGTTGA
909840 AATGTATATGGGTACATTATCAACAGAAAAGTATGCTATAGTTGA
1 AATGTATATGGGTACATTATCAACAGAAAAGTATGCTATAGTTGA
909885 AATGTATATGGGTACATTATCAACAGAAAAGTATG
1 AATGTATATGGGTACATTATCAACAGAAAAGTATG
909920 TCGCTGAAAT
Statistics
Matches: 162, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 162 1.00
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (45 bp):
AATGTATATGGGTACATTATCAACAGAAAAGTATGCTATAGTTGA
Found at i:909970 original size:34 final size:34
Alignment explanation
Indices: 909927--909991 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
909917 ATGTCGCTGA
*
909927 AATGCATATGGGTGCATTATTGGCATAAAAGAAT
1 AATGCATATGAGTGCATTATTGGCATAAAAGAAT
*
909961 AATGCATATGAGTGCATTATTGGCATGAAAG
1 AATGCATATGAGTGCATTATTGGCATAAAAG
909992 TATGTCATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.37, C:0.09, G:0.25, T:0.29
Consensus pattern (34 bp):
AATGCATATGAGTGCATTATTGGCATAAAAGAAT
Found at i:910686 original size:2 final size:2
Alignment explanation
Indices: 910679--910773 Score: 190
Period size: 2 Copynumber: 47.5 Consensus size: 2
910669 TTAAGAGATG
910679 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
910721 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
910763 AT AT AT AT AT A
1 AT AT AT AT AT A
910774 GTACAACAAT
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 93 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:912573 original size:2 final size:2
Alignment explanation
Indices: 912566--912596 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
912556 ATTAGGTTAG
912566 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
912597 GTTGTTCTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:912904 original size:2 final size:2
Alignment explanation
Indices: 912897--912953 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
912887 AAAAAGAAAG
912897 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
912939 AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT A
912954 AATGGTTATG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:914584 original size:22 final size:20
Alignment explanation
Indices: 914552--914607 Score: 58
Period size: 22 Copynumber: 2.7 Consensus size: 20
914542 CCGGAAGGGG
* *
914552 GTATCGGTACCATAGTATGGTA
1 GTATCGATACCATAGTA-AG-A
*
914574 GTATCGATACCATGGTAAGA
1 GTATCGATACCATAGTAAGA
*
914594 GTATCTATACCATA
1 GTATCGATACCATA
914608 CAACATCGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 13 0.45
21 1 0.03
22 15 0.52
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.30
Consensus pattern (20 bp):
GTATCGATACCATAGTAAGA
Found at i:914612 original size:95 final size:94
Alignment explanation
Indices: 914475--914697 Score: 288
Period size: 95 Copynumber: 2.4 Consensus size: 94
914465 ATACCGATGA
* * * * *
914475 GGTAGTATCGATACCATGGTAAGGGTATCGATATCTGGCAACATCGAATCTAAAATTGGTATCGA
1 GGTAGTATCGATACCATGGTAAGAGTATCGATACCTGACAACATCGAAGCTAAAATTGGAATCGA
*
914540 TACCGGAAGGGGGTATCGGTACCATAGTAT
66 TACCAGAA-GGGGTATCGGTACCATAGTAT
*
914570 GGTAGTATCGATACCATGGTAAGAGTATCTATACCAT-ACAACATCGAAGCTAAAATTGGAATCG
1 GGTAGTATCGATACCATGGTAAGAGTATCGATACC-TGACAACATCGAAGCTAAAATTGGAATCG
*
914634 ATACCAGAAGGGGTATCGGTATCATAGTAT
65 ATACCAGAAGGGGTATCGGTACCATAGTAT
* * * * *
914664 AGAAGTATCGGTACTAGGGT-AGTAGTATCGATAC
1 GGTAGTATCGATACCATGGTAAG-AGTATCGATAC
914698 TATTGAGCTT
Statistics
Matches: 112, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
93 2 0.02
94 45 0.40
95 64 0.57
96 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (94 bp):
GGTAGTATCGATACCATGGTAAGAGTATCGATACCTGACAACATCGAAGCTAAAATTGGAATCGA
TACCAGAAGGGGTATCGGTACCATAGTAT
Found at i:915406 original size:45 final size:45
Alignment explanation
Indices: 915106--915395 Score: 481
Period size: 45 Copynumber: 6.4 Consensus size: 45
915096 TGAAAATAAT
* ** *
915106 AATGCATATGGGCGCATTATCAACAGAAAAGTATGCTATAGTTGT
1 AATGTATATGGGTACATTATCAACAGAAAAGTATGCTATAGTTGA
915151 AATGTATATGGGTACATTATCAACAGAAAAGTATGCTATAGTTGA
1 AATGTATATGGGTACATTATCAACAGAAAAGTATGCTATAGTTGA
*
915196 AATGTATATGGGTACATTATCAACATAAAAGTATGCTATAGTTGA
1 AATGTATATGGGTACATTATCAACAGAAAAGTATGCTATAGTTGA
*
915241 AATGTATATGAGTACATTATCAACAGAAAAGTATGCTATAGTTGA
1 AATGTATATGGGTACATTATCAACAGAAAAGTATGCTATAGTTGA
*
915286 AATGTATATGGGTACATTATGAACAGAAAAGTATGCTATAGTTGA
1 AATGTATATGGGTACATTATCAACAGAAAAGTATGCTATAGTTGA
* *
915331 AATGTATATGGGTACATTATCAACAGAAAAGTATGCCATAGCTGA
1 AATGTATATGGGTACATTATCAACAGAAAAGTATGCTATAGTTGA
* *
915376 AATGCATATGGGTGCATTAT
1 AATGTATATGGGTACATTAT
915396 TGGCATAAAA
Statistics
Matches: 231, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 231 1.00
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.31
Consensus pattern (45 bp):
AATGTATATGGGTACATTATCAACAGAAAAGTATGCTATAGTTGA
Found at i:915419 original size:34 final size:34
Alignment explanation
Indices: 915376--915440 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
915366 CCATAGCTGA
*
915376 AATGCATATGGGTGCATTATTGGCATAAAAGAAT
1 AATGCATATGAGTGCATTATTGGCATAAAAGAAT
*
915410 AATGCATATGAGTGCATTATTGGCATGAAAG
1 AATGCATATGAGTGCATTATTGGCATAAAAG
915441 GATGCCATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.37, C:0.09, G:0.25, T:0.29
Consensus pattern (34 bp):
AATGCATATGAGTGCATTATTGGCATAAAAGAAT
Found at i:916136 original size:2 final size:2
Alignment explanation
Indices: 916129--916162 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
916119 TGAAGGGATG
916129 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
916163 GTACAACAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:919764 original size:5 final size:5
Alignment explanation
Indices: 919754--919831 Score: 120
Period size: 5 Copynumber: 15.6 Consensus size: 5
919744 TTCCATTAAA
* * *
919754 TTTAT TTTAT TTTAA TTTAA TTTAT TTTAT TTTAA TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
*
919804 TTTAA TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
919832 TCTCTGAACA
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 67 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTAT
Found at i:919764 original size:20 final size:20
Alignment explanation
Indices: 919752--919827 Score: 134
Period size: 20 Copynumber: 3.8 Consensus size: 20
919742 ATTTCCATTA
919752 AATTTATTTTATTTTAATTT
1 AATTTATTTTATTTTAATTT
919772 AATTTATTTTATTTTAATTT
1 AATTTATTTTATTTTAATTT
*
919792 ATTTTATTTTATTTTAATTT
1 AATTTATTTTATTTTAATTT
*
919812 ATTTTATTTTATTTTA
1 AATTTATTTTATTTTA
919828 TTTTTCTCTG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 55 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (20 bp):
AATTTATTTTATTTTAATTT
Found at i:924339 original size:18 final size:18
Alignment explanation
Indices: 924303--924346 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
924293 CTTTAATTTA
*
924303 TTTATTTAATCATTTTCT
1 TTTATTTAATCATTATCT
924321 TTTATTTAATTC-TTATCT
1 TTTATTTAA-TCATTATCT
924339 TTT-TTTAA
1 TTTATTTAA
924347 AAAAAAACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 5 0.21
18 17 0.71
19 2 0.08
ACGTcount: A:0.23, C:0.09, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTATTTAATCATTATCT
Found at i:924688 original size:126 final size:126
Alignment explanation
Indices: 924463--924714 Score: 495
Period size: 126 Copynumber: 2.0 Consensus size: 126
924453 CCTGAAATTC
924463 TATCTTCCTCTAAAATCAAGAAACCGTTTTACTAAATCACAAAAACCATAGTCCCTGTGGATTGA
1 TATCTTCCTCTAAAATCAAGAAACCGTTTTACTAAATCACAAAAACCATAGTCCCTGTGGATTGA
924528 CTCTGCTTCTCTATACTACCTTTTCCTTTCTATTTATTAAGAAGTCGGGAATTATTTTAAT
66 CTCTGCTTCTCTATACTACCTTTTCCTTTCTATTTATTAAGAAGTCGGGAATTATTTTAAT
924589 TATCTTCCTCTAAAATCAAGAAACCGTTTTACTAAATCACAAAAACCATAGTCCCTGTGGATTGA
1 TATCTTCCTCTAAAATCAAGAAACCGTTTTACTAAATCACAAAAACCATAGTCCCTGTGGATTGA
*
924654 CTCTGCTTCTCTATACTACTTTTTCCTTTCTATTTATTAAGAAGTCGGGAATTATTTTAAT
66 CTCTGCTTCTCTATACTACCTTTTCCTTTCTATTTATTAAGAAGTCGGGAATTATTTTAAT
924715 AGAAAAACTA
Statistics
Matches: 125, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
126 125 1.00
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.38
Consensus pattern (126 bp):
TATCTTCCTCTAAAATCAAGAAACCGTTTTACTAAATCACAAAAACCATAGTCCCTGTGGATTGA
CTCTGCTTCTCTATACTACCTTTTCCTTTCTATTTATTAAGAAGTCGGGAATTATTTTAAT
Found at i:927098 original size:12 final size:12
Alignment explanation
Indices: 927081--927144 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
927071 AATAAGCTCG
*
927081 TTTATCGACTCA
1 TTTATCAACTCA
927093 TTTATCAACTCA
1 TTTATCAACTCA
*
927105 TTTAT-AAGCTCG
1 TTTATCAA-CTCA
* *
927117 TTTA-CTGATTCA
1 TTTATC-AACTCA
*
927129 TTTATAAACTCA
1 TTTATCAACTCA
927141 TTTA
1 TTTA
927145 CTGGGTTCTC
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
11 2 0.05
12 37 0.93
13 1 0.03
ACGTcount: A:0.30, C:0.19, G:0.06, T:0.45
Consensus pattern (12 bp):
TTTATCAACTCA
Found at i:927119 original size:36 final size:36
Alignment explanation
Indices: 927072--927144 Score: 112
Period size: 36 Copynumber: 2.0 Consensus size: 36
927062 ATGTTCATGA
*
927072 ATAAGCTCGTTTA-TCGACTCATTTATCAACTCATTT
1 ATAAGCTCGTTTACT-GACTCATTTATAAACTCATTT
*
927108 ATAAGCTCGTTTACTGATTCATTTATAAACTCATTT
1 ATAAGCTCGTTTACTGACTCATTTATAAACTCATTT
927144 A
1 A
927145 CTGGGTTCTC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
36 33 0.97
37 1 0.03
ACGTcount: A:0.30, C:0.19, G:0.08, T:0.42
Consensus pattern (36 bp):
ATAAGCTCGTTTACTGACTCATTTATAAACTCATTT
Found at i:927129 original size:24 final size:24
Alignment explanation
Indices: 927102--927147 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
927092 ATTTATCAAC
* *
927102 TCATTTATAAGCTCGTTTACTGAT
1 TCATTTATAAACTCATTTACTGAT
927126 TCATTTATAAACTCATTTACTG
1 TCATTTATAAACTCATTTACTG
927148 GGTTCTCCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.28, C:0.17, G:0.09, T:0.46
Consensus pattern (24 bp):
TCATTTATAAACTCATTTACTGAT
Found at i:930905 original size:13 final size:13
Alignment explanation
Indices: 930889--930913 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
930879 AGAAAAAGAG
930889 CAACAAAAAATAA
1 CAACAAAAAATAA
930902 CAACAAAAAATA
1 CAACAAAAAATA
930914 GTGCGTGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.16, G:0.00, T:0.08
Consensus pattern (13 bp):
CAACAAAAAATAA
Found at i:936581 original size:3 final size:3
Alignment explanation
Indices: 936575--936623 Score: 64
Period size: 3 Copynumber: 16.0 Consensus size: 3
936565 AAAAAATATG
*
936575 TAA TAA TAAA TAA TAA TAAA TAA TAA -AA CAA TAA TAA TAA TAA TAA
1 TAA TAA T-AA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA
936621 TAA
1 TAA
936624 ATAACGATAA
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
2 2 0.05
3 34 0.81
4 6 0.14
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:936588 original size:10 final size:10
Alignment explanation
Indices: 936575--936627 Score: 81
Period size: 10 Copynumber: 5.3 Consensus size: 10
936565 AAAAAATATG
936575 TAATAATAAA
1 TAATAATAAA
936585 TAATAATAAA
1 TAATAATAAA
*
936595 TAATAAAACAA
1 TAATAATA-AA
936606 TAATAAT-AA
1 TAATAATAAA
936615 TAATAATAAA
1 TAATAATAAA
936625 TAA
1 TAA
936628 CGATAAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
9 9 0.23
10 22 0.56
11 8 0.21
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (10 bp):
TAATAATAAA
Found at i:936847 original size:43 final size:43
Alignment explanation
Indices: 936800--937115 Score: 152
Period size: 43 Copynumber: 7.4 Consensus size: 43
936790 CTCATACGCA
*
936800 ATGAAGAGGTCTGGTCATCTAAGGGTGACACAGCTCATACGTG
1 ATGAAGAGGTCTGGTCATCTAAGGGTGACACAGCTCCTACGTG
* * * * *
936843 ATGAAGAGATCTGG---TCT-GGGGATGACACGGTTCCTACATG
1 ATGAAGAGGTCTGGTCATCTAAGGG-TGACACAGCTCCTACGTG
* * * * *
936883 ATGAGGACGG-CTGGCCATCTAAAGGTGATAACACGTTCCTACGTG
1 ATGAAGA-GGTCTGGTCATCTAAGGGTGA-CACA-GCTCCTACGTG
* * * * *
936928 ATGAGGACGG-CTGGTTATCTATGGTTGACACGGCTCCTACGTG
1 ATGAAGA-GGTCTGGTCATCTAAGGGTGACACAGCTCCTACGTG
* * * * *
936971 ATGAAGAGATCTGG---TCT-GGGGATGACACGGTTCCTACATG
1 ATGAAGAGGTCTGGTCATCTAAGGG-TGACACAGCTCCTACGTG
* * * * *
937011 ATGAGGACGG-CTGGCCATCTAAAGGTGATAACACGGTTCCTACGTG
1 ATGAAGA-GGTCTGGTCATCT-AAGG-G-TGACACAGCTCCTACGTG
* * * * *
937057 ATGAGGACGG-CTGGTTATCTATGGTTGACACGGCTCCTACGTG
1 ATGAAGA-GGTCTGGTCATCTAAGGGTGACACAGCTCCTACGTG
* *
937100 ATGAGGAGATCTGGTC
1 ATGAAGAGGTCTGGTC
937116 TGGGGAATGA
Statistics
Matches: 215, Mismatches: 40, Indels: 36
0.74 0.14 0.12
Matches are distributed among these distances:
39 5 0.02
40 56 0.26
41 2 0.01
42 2 0.01
43 70 0.33
44 6 0.03
45 38 0.18
46 36 0.17
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.25
Consensus pattern (43 bp):
ATGAAGAGGTCTGGTCATCTAAGGGTGACACAGCTCCTACGTG
Found at i:937038 original size:128 final size:129
Alignment explanation
Indices: 936810--937166 Score: 574
Period size: 128 Copynumber: 2.8 Consensus size: 129
936800 ATGAAGAGGT
* * * * *
936810 CTGGTCATCTAAGGGTGACACAGCTCATACGTGATGAAGAGATCTGGTCTGGGGATGACACGGTT
1 CTGGTTATCTATGGTTGACACGGCTCCTACGTGATGAAGAGATCTGGTCTGGGGATGACACGGTT
936875 CCTACATGATGAGGACGGCTGGCCATCTAAAGGTGATAACAC-GTTCCTACGTGATGAGGACGG
66 CCTACATGATGAGGACGGCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGG
936938 CTGGTTATCTATGGTTGACACGGCTCCTACGTGATGAAGAGATCTGGTCTGGGGATGACACGGTT
1 CTGGTTATCTATGGTTGACACGGCTCCTACGTGATGAAGAGATCTGGTCTGGGGATGACACGGTT
937003 CCTACATGATGAGGACGGCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGG
66 CCTACATGATGAGGACGGCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGG
*
937067 CTGGTTATCTATGGTTGACACGGCTCCTACGTGATGAGGAGATCTGGTCTGGGGAATGACAACGG
1 CTGGTTATCTATGGTTGACACGGCTCCTACGTGATGAAGAGATCTGGTCTGGGG-ATGAC-ACGG
* * * * *
937132 CTCATACGTGATGAGGA-GATCTGGTCATCTAAAGG
64 TTCCTACATGATGAGGACG-GCTGGCCATCTAAAGG
937167 AGTTATGGTT
Statistics
Matches: 214, Mismatches: 11, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
128 102 0.48
129 74 0.35
130 6 0.03
131 32 0.15
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (129 bp):
CTGGTTATCTATGGTTGACACGGCTCCTACGTGATGAAGAGATCTGGTCTGGGGATGACACGGTT
CCTACATGATGAGGACGGCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGG
Found at i:937062 original size:46 final size:45
Alignment explanation
Indices: 936863--937106 Score: 249
Period size: 43 Copynumber: 5.6 Consensus size: 45
936853 CTGGTCTGGG
*
936863 GATGACACGGTTCCTACATGATGAGGACGGCTGGCCATCTAAAGGT
1 GATGACACGGTTCCTACGTGATGAGGACGGCTGGCCATCT-AAGGT
* ** *
936909 GATAACAC-GTTCCTACGTGATGAGGACGGCTGGTTATCTATGGT
1 GATGACACGGTTCCTACGTGATGAGGACGGCTGGCCATCTAAGGT
* * * *
936953 --TGACACGGCTCCTACGTGATGAAGA-GATCTGG---TCT--GGG
1 GATGACACGGTTCCTACGTGATGAGGACG-GCTGGCCATCTAAGGT
*
936991 GATGACACGGTTCCTACATGATGAGGACGGCTGGCCATCTAAAGGT
1 GATGACACGGTTCCTACGTGATGAGGACGGCTGGCCATCT-AAGGT
* ** *
937037 GATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTATGGT
1 GATGACACGGTTCCTACGTGATGAGGACGGCTGGCCATCTAAGGT
*
937082 --TGACACGGCTCCTACGTGATGAGGA
1 GATGACACGGTTCCTACGTGATGAGGA
937107 GATCTGGTCT
Statistics
Matches: 165, Mismatches: 22, Indels: 25
0.78 0.10 0.12
Matches are distributed among these distances:
38 2 0.01
40 29 0.18
41 1 0.01
42 6 0.04
43 46 0.28
44 4 0.02
45 32 0.19
46 45 0.27
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (45 bp):
GATGACACGGTTCCTACGTGATGAGGACGGCTGGCCATCTAAGGT
Found at i:937329 original size:62 final size:62
Alignment explanation
Indices: 937244--937360 Score: 159
Period size: 62 Copynumber: 1.9 Consensus size: 62
937234 TTTCAAAAGC
*
937244 AACTGTCTCAAAAGAGACAAAATTTTGTTTCAAA-GGAAATGA-CTC-AAGATTGTTTAAAGGAA
1 AACTGTCTCAAAAGAGACAAAA-TTCGTTT-AAAGGGAAATGATCTCAAAGA-TGTTTAAAGGAA
* *
937306 AACTGTCTCGAATGAGACAAAATTCGTTTAAAGGGAAATGATCTCAAAGATGTTT
1 AACTGTCTCAAAAGAGACAAAATTCGTTTAAAGGGAAATGATCTCAAAGATGTTT
937361 GTTTTGTTTC
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
60 3 0.06
61 14 0.29
62 28 0.57
63 4 0.08
ACGTcount: A:0.41, C:0.12, G:0.19, T:0.28
Consensus pattern (62 bp):
AACTGTCTCAAAAGAGACAAAATTCGTTTAAAGGGAAATGATCTCAAAGATGTTTAAAGGAA
Found at i:937587 original size:28 final size:28
Alignment explanation
Indices: 937547--937619 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
937537 TTAAGAGAGA
*
937547 CAAA-ATTTGTTCCCAAAGAAACAAACT
1 CAAAGATTTTTTCCCAAAGAAACAAACT
* *
937574 CAAAGATTTTTTCCAAAAGAAACAATCT
1 CAAAGATTTTTTCCCAAAGAAACAAACT
* *
937602 CAAAGATTCTTTCACAAA
1 CAAAGATTTTTTCCCAAA
937620 ATTGTCTAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 4 0.10
28 35 0.90
ACGTcount: A:0.47, C:0.21, G:0.07, T:0.26
Consensus pattern (28 bp):
CAAAGATTTTTTCCCAAAGAAACAAACT
Found at i:937657 original size:53 final size:55
Alignment explanation
Indices: 937600--937705 Score: 144
Period size: 55 Copynumber: 2.0 Consensus size: 55
937590 AAGAAACAAT
** *
937600 CTCAAAGATTCT-TTCA-CAAAATTGTCTAAAGAGAGACAAAACTTTGTTTCAGA
1 CTCAAAGATTCTCTAAAGCAAAACTGTCTAAAGAGAGACAAAACTTTGTTTCAGA
* * *
937653 CTCAAAGATTGTCTAAAGGAAAACTGTCTCAAGAGAGACAAAACTTTGTTTCA
1 CTCAAAGATTCTCTAAAGCAAAACTGTCTAAAGAGAGACAAAACTTTGTTTCA
937706 AAATAAATAG
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
53 11 0.24
54 2 0.04
55 32 0.71
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (55 bp):
CTCAAAGATTCTCTAAAGCAAAACTGTCTAAAGAGAGACAAAACTTTGTTTCAGA
Found at i:937730 original size:26 final size:25
Alignment explanation
Indices: 937701--937822 Score: 100
Period size: 28 Copynumber: 4.5 Consensus size: 25
937691 CAAAACTTTG
* *
937701 TTTCAAAATAAATAGACTCAAAGATT
1 TTTCAAAAGAAACA-ACTCAAAGATT
937727 TTTCAAAAGAAACAACTCAAAGATAT
1 TTTCAAAAGAAACAACTCAAAGAT-T
* *
937753 CTATTCAAAAGGAACAAACTCCAAGATTT
1 -T-TTCAAAAGAAAC-AACTCAAAGA-TT
* *
937782 TATTTAAAAGGAACTAACTCAAAGATTT
1 T-TTCAAAAGAAAC-AACTCAAAGA-TT
*
937810 TTTCAAGAGAAAC
1 TTTCAAAAGAAAC
937823 TGTCTCAAGA
Statistics
Matches: 81, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
25 10 0.12
26 13 0.16
27 10 0.12
28 37 0.46
29 10 0.12
30 1 0.01
ACGTcount: A:0.48, C:0.15, G:0.10, T:0.27
Consensus pattern (25 bp):
TTTCAAAAGAAACAACTCAAAGATT
Found at i:937768 original size:28 final size:27
Alignment explanation
Indices: 937716--937815 Score: 114
Period size: 28 Copynumber: 3.7 Consensus size: 27
937706 AAATAAATAG
*
937716 ACTCAAAGATTT-TTCAAAAGAAAC-A
1 ACTCAAAGATTTATTCAAAAGGAACAA
937741 ACTCAAAGATATCTATTCAAAAGGAACAA
1 ACTCAAAGAT-T-TATTCAAAAGGAACAA
* * *
937770 ACTCCAAGATTTTATTTAAAAGGAACTA
1 ACTCAAAGA-TTTATTCAAAAGGAACAA
*
937798 ACTCAAAGATTTTTTCAA
1 ACTCAAAGATTTATTCAA
937816 GAGAAACTGT
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
25 10 0.16
26 1 0.02
27 8 0.13
28 33 0.52
29 10 0.16
30 1 0.02
ACGTcount: A:0.47, C:0.16, G:0.09, T:0.28
Consensus pattern (27 bp):
ACTCAAAGATTTATTCAAAAGGAACAA
Found at i:938190 original size:35 final size:35
Alignment explanation
Indices: 938098--938192 Score: 93
Period size: 35 Copynumber: 2.7 Consensus size: 35
938088 TAAGATATAG
* ***
938098 TCTCAAATGAGACAACATTTGTTTTTAGAGAAATTG
1 TCTCAAGTGAGACAAC-TTTGTTTTTAGAGAAACAA
* * *
938134 TATCAAGCGAGACAAAGTTTGTTTTT-GAGAAACAA
1 TCTCAAGTGAGAC-AACTTTGTTTTTAGAGAAACAA
938169 TCTCAAGTGAGATCAACTTTGTTT
1 TCTCAAGTGAGA-CAACTTTGTTT
938193 AATGTGAAAC
Statistics
Matches: 47, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
35 25 0.53
36 20 0.43
37 2 0.04
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.35
Consensus pattern (35 bp):
TCTCAAGTGAGACAACTTTGTTTTTAGAGAAACAA
Found at i:938359 original size:105 final size:105
Alignment explanation
Indices: 938164--938352 Score: 265
Period size: 105 Copynumber: 1.8 Consensus size: 105
938154 GTTTTTGAGA
* * *
938164 AACAATCTCAAGTGAGATCAACTTTGTTTAATGTGAAACAAATTCGAAATTTGGATCTCCAAGGG
1 AACAATCTCAAGTGAGATCAACTTTGTTTAATGTGAAACAAATTCAAAATTTGGATCTCAAAGGA
938229 AAAAGGTCTCAAGCGAGACAAAATTTATTTTGAAAGAAAC
66 AAAAGGTCTCAAGCGAGACAAAATTTATTTTGAAAGAAAC
* * * **
938269 AACAATCT-AAGGTGAGATTAATTTTGTTTTAA-GTGAATCAAATTCAAAATTTTTATCTCAAAG
1 AACAATCTCAA-GTGAGATCAACTTTG-TTTAATGTGAAACAAATTCAAAATTTGGATCTCAAAG
*
938332 GAAAAATGTCTCAAGCGAGAC
64 GAAAAAGGTCTCAAGCGAGAC
938353 GCAATTTGTT
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
104 2 0.03
105 66 0.90
106 5 0.07
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.29
Consensus pattern (105 bp):
AACAATCTCAAGTGAGATCAACTTTGTTTAATGTGAAACAAATTCAAAATTTGGATCTCAAAGGA
AAAAGGTCTCAAGCGAGACAAAATTTATTTTGAAAGAAAC
Found at i:946474 original size:3 final size:3
Alignment explanation
Indices: 946468--946528 Score: 74
Period size: 3 Copynumber: 21.0 Consensus size: 3
946458 AAAAAATATG
* *
946468 TAA TAA TAAA TAA TAA TAA -AA TAA TAA -GA TAA CAA TAA TAA TAA
1 TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
946512 TAA TAA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA
946529 CGATAAAAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
2 5 0.10
3 42 0.84
4 3 0.06
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.28
Consensus pattern (3 bp):
TAA
Done.