Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006191.1 Hibiscus syriacus cultivar Beakdansim tig00014731_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76142

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7558--7615
24
2.4
24
85
0
80
17
15
25
41
1.89
10250--10288
20
2.0
20
90
5
62
79
5
10
5
1.04
14868--14927
10
5.6
10
75
21
59
65
3
1
30
1.19
14888--14929
19
2.1
20
82
8
59
71
0
0
28
0.86
14999--15137
33
4.1
32
75
14
127
41
13
6
38
1.70
14998--15139
35
4.1
35
76
12
109
40
14
6
38
1.71
15117--15245
36
3.6
36
82
7
129
41
12
4
41
1.63
15149--15273
36
3.6
34
79
14
96
43
8
2
45
1.48
21119--21151
13
2.5
14
90
9
52
75
0
0
24
0.80
24974--25215
109
2.2
109
80
11
255
22
15
14
47
1.82
27032--27086
3
17.7
3
77
7
56
40
0
0
60
0.97
28727--28759
9
3.8
9
84
8
50
45
0
0
54
0.99
31804--31891
7
12.4
7
71
19
58
15
13
12
57
1.65
31827--31894
34
2.0
35
83
13
88
19
13
11
55
1.67
36992--37227
75
3.2
75
88
2
334
31
10
22
35
1.88
38499--38562
22
2.9
22
85
0
83
35
15
14
34
1.88
39267--39374
45
2.4
45
84
3
144
25
24
21
29
1.99
39208--39493
121
2.4
119
90
1
410
24
22
20
33
1.97
39381--39575
45
4.3
45
88
0
264
24
22
18
33
1.97
39261--40865
211
7.5
211
85
6
1571
23
22
19
34
1.97
39598--39749
45
3.4
45
97
0
286
21
23
20
34
1.97
39638--39868
119
1.9
119
95
1
419
22
22
19
34
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39683--39823
74
1.9
74
94
2
248
23
21
19
34
1.96
39757--39960
45
4.5
45
92
2
311
25
22
20
32
1.98
39973--40171
45
4.4
45
91
3
301
23
22
20
33
1.97
40179--40922
45
16.6
45
94
0
1294
23
23
18
34
1.96
40103--40245
76
1.9
74
89
2
223
23
21
20
33
1.97
40258--40331
25
3.2
25
64
28
72
24
24
14
36
1.93
41081--41139
3
19.7
3
75
6
57
37
0
1
61
1.07
42781--42814
9
3.9
9
84
7
52
44
0
0
55
0.99
44564--44596
17
1.9
17
93
0
57
27
0
0
72
0.85
45298--45331
17
2.0
17
88
11
52
61
0
5
32
1.20
46083--46390
40
7.6
41
73
4
239
31
17
16
34
1.93
46090--46388
81
3.7
82
78
6
205
31
18
17
33
1.93
50491--50547
21
2.7
21
86
0
78
22
7
22
47
1.75
54087--54176
43
2.1
43
95
2
164
42
20
10
27
1.84
55668--55742
28
2.6
28
83
8
96
40
5
0
54
1.23
55791--55860
27
2.5
28
83
6
88
42
7
0
50
1.30
55791--55868
29
2.8
29
82
5
106
39
7
0
52
1.30
55913--55977
30
2.2
30
91
0
103
41
9
1
47
1.45
55973--56055
31
2.7
31
86
1
105
33
6
1
59
1.30
56127--56255
57
2.2
57
83
8
161
54
0
8
37
1.31
56125--56255
29
4.5
29
79
11
135
54
0
9
36
1.33
57196--57240
23
2.0
23
81
0
54
42
2
8
46
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57327--57369
3
14.7
3
85
4
61
34
4
0
60
1.17
57330--57369
15
2.7
15
96
3
73
35
5
0
60
1.19
57764--57850
4
21.8
4
83
0
75
0
57
1
41
1.06
57765--57838
8
8.8
8
82
11
85
0
62
0
37
0.96
57764--57838
16
4.9
16
82
12
104
0
61
0
38
0.96
57773--57835
24
2.6
24
94
0
108
0
63
0
36
0.95
64547--64604
2
29.0
2
100
0
116
50
0
0
50
1.00
65741--65776
17
2.1
17
89
0
54
8
8
5
77
1.11
70078--70116
18
2.3
16
86
8
51
79
2
5
12
1.00
70119--70185
22
3.0
22
82
4
73
67
2
28
1
1.14
75668--75737
4
16.5
4
78
21
72
70
0
0
30
0.88
75672--75752
29
2.7
29
88
5
108
66
1
1
30
1.07
75765--75791
13
2.1
13
100
0
54
40
7
7
44
1.60
75838--75864
14
1.9
14
100
0
54
37
14
11
37
1.82
75764--75930
38
4.6
36
79
11
182
39
10
6
43
1.66
75764--75960
36
5.4
36
75
15
172
40
10
6
43
1.63

Tables:   1

The End!