Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006192.1 Hibiscus syriacus cultivar Beakdansim tig00014732_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 476961
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 3
Found at i:372162 original size:56 final size:55
Alignment explanation
Indices: 371996--372345 Score: 237
Period size: 53 Copynumber: 6.6 Consensus size: 55
371986 GTTTTTTAGG
* * * * *
371996 AACTAAGTCCGATTTTCGGAAGTTTCTTGATCATTTTTAAATGATCTTTTAAAGA
1 AACTAAGACTGATTTTCAGAAGTTTCTTGATGATTTTTAAATGAGCTTTTAAAGA
* * * * * *
372051 AACTATGCCTGATTTTTAGAACTTTCTTGACGATTTTCAAATGAGCTTTTAAAGA
1 AACTAAGACTGATTTTCAGAAGTTTCTTGATGATTTTTAAATGAGCTTTTAAAGA
* *
372106 AACTAAGACTGATTTTCAGAAGTTTTTTTGATGATTTTTAAATGAGCTTTCAAAGA
1 AACTAAGACTGATTTTCAGAAG-TTTCTTGATGATTTTTAAATGAGCTTTTAAAGA
* * * *
372162 AATTAAGTA-TGATTTTCA-TAGATTTCTTGA-CA-----AAATGA--ATTTAAAGA
1 AACTAAG-ACTGATTTTCAGAAG-TTTCTTGATGATTTTTAAATGAGCTTTTAAAGA
* * * ** * * *
372209 AGCTAA-ACCTAATTTTTAGGTGTTTCTTGATG-TTTTCAAATGA-ATTTGAAAGA
1 AACTAAGA-CTGATTTTCAGAAGTTTCTTGATGATTTTTAAATGAGCTTTTAAAGA
* * * * * * *
372262 AACTAAGTCTAATTTTTAGGAGTTTCTTGATG-TTTTCAAATGA-ATTTGAAAGA
1 AACTAAGACTGATTTTCAGAAGTTTCTTGATGATTTTTAAATGAGCTTTTAAAGA
* *
372315 AGCTAAGACTGGTTTTCA-AATGTTTCTTGAT
1 AACTAAGACTGATTTTCAGAA-GTTTCTTGAT
372346 AGTTTCAAAT
Statistics
Matches: 238, Mismatches: 43, Indels: 30
0.77 0.14 0.10
Matches are distributed among these distances:
45 1 0.00
47 26 0.11
48 1 0.00
49 6 0.03
52 7 0.03
53 79 0.33
54 1 0.00
55 72 0.30
56 44 0.18
57 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.41
Consensus pattern (55 bp):
AACTAAGACTGATTTTCAGAAGTTTCTTGATGATTTTTAAATGAGCTTTTAAAGA
Found at i:372274 original size:53 final size:53
Alignment explanation
Indices: 372194--372400 Score: 258
Period size: 53 Copynumber: 3.9 Consensus size: 53
372184 TTTCTTGACA
372194 AAATGAATTT-AAAGAAGCTAAACCTAATTTTTAGGTGTTTCTTGATGTTTTC
1 AAATGAATTTGAAAGAAGCTAAACCTAATTTTTAGGTGTTTCTTGATGTTTTC
* ** *
372246 AAATGAATTTGAAAGAAACTAAGTCTAATTTTTAGGAGTTTCTTGATGTTTTC
1 AAATGAATTTGAAAGAAGCTAAACCTAATTTTTAGGTGTTTCTTGATGTTTTC
** * **
372299 AAATGAATTTGAAAGAAGCTAAGA-CTGGTTTTCAAATGTTTCTTGATAG-TTTC
1 AAATGAATTTGAAAGAAGCTAA-ACCTAATTTTTAGGTGTTTCTTGAT-GTTTTC
* * *
372352 AAATGAATTTTTATAGAAGCTAAACCTAATTTTTAGGGGTTTCTTGATG
1 AAATGAA-TTTGAAAGAAGCTAAACCTAATTTTTAGGTGTTTCTTGATG
372401 AGTAAGTCCT
Statistics
Matches: 130, Mismatches: 20, Indels: 9
0.82 0.13 0.06
Matches are distributed among these distances:
52 10 0.08
53 89 0.68
54 31 0.24
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.41
Consensus pattern (53 bp):
AAATGAATTTGAAAGAAGCTAAACCTAATTTTTAGGTGTTTCTTGATGTTTTC
Found at i:372831 original size:36 final size:36
Alignment explanation
Indices: 372718--372833 Score: 108
Period size: 36 Copynumber: 3.2 Consensus size: 36
372708 TTTTTTCTTA
*
372718 AAACAAACTTCGTCTTGCTTGAGACAGTTTCACTCG
1 AAACAAACTTCGTCTCGCTTGAGACAGTTTCACTCG
* ** ** ** * **
372754 AAACAAAATTTTATCTCAATTGAGATTG-TTCTTCTTA
1 AAAC-AAACTTCGTCTCGCTTGAGACAGTTTC-ACTCG
372791 AAACAAACTTCGTCTCGCTTGAGACAGTTTCACTCG
1 AAACAAACTTCGTCTCGCTTGAGACAGTTTCACTCG
372827 AAACAAA
1 AAACAAA
372834 AATATATCTC
Statistics
Matches: 56, Mismatches: 21, Indels: 6
0.67 0.25 0.07
Matches are distributed among these distances:
36 32 0.57
37 24 0.43
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.32
Consensus pattern (36 bp):
AAACAAACTTCGTCTCGCTTGAGACAGTTTCACTCG
Found at i:372851 original size:37 final size:36
Alignment explanation
Indices: 372735--372851 Score: 94
Period size: 37 Copynumber: 3.2 Consensus size: 36
372725 CTTCGTCTTG
*
372735 CTTGAGACAGTTTCACTCGAAACAAAATTTTATCTCA
1 CTTGAGACAGTTTCACTCGAAACAAAA-ATTATCTCA
* ** * ** * * *
372772 ATTGAGATTG-TTCTTCTTAAAAC-AAACTTCGTCTCG
1 CTTGAGACAGTTTC-ACTCGAAACAAAAATT-ATCTCA
372808 CTTGAGACAGTTTCACTCGAAACAAAAATATATCTCA
1 CTTGAGACAGTTTCACTCGAAACAAAAAT-TATCTCA
372845 CTTGAGA
1 CTTGAGA
372852 TGGTTTTTCT
Statistics
Matches: 57, Mismatches: 18, Indels: 10
0.67 0.21 0.12
Matches are distributed among these distances:
35 2 0.04
36 23 0.40
37 31 0.54
38 1 0.02
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (36 bp):
CTTGAGACAGTTTCACTCGAAACAAAAATTATCTCA
Found at i:372956 original size:34 final size:34
Alignment explanation
Indices: 372845--372958 Score: 93
Period size: 34 Copynumber: 3.2 Consensus size: 34
372835 ATATATCTCA
*
372845 CTTGAGATGGTTTTTCTTAAAACCAACTTCGTCTTG
1 CTTGAGAT--TTTTTCTTAAAACCAACTTTGTCTTG
** * * * * * **
372881 CTTGAGACAATTTTCCCTTGAAACAAAATGTATCTCA
1 CTTGAG---ATTTTTTCTTAAAACCAACTTTGTCTTG
372918 CTTGAGATTTTTTCTTAAAACCAACTTTGTCTTG
1 CTTGAGATTTTTTCTTAAAACCAACTTTGTCTTG
372952 CTTGAGA
1 CTTGAGA
372959 CAGTTTTCCC
Statistics
Matches: 56, Mismatches: 19, Indels: 8
0.67 0.23 0.10
Matches are distributed among these distances:
34 26 0.46
36 6 0.11
37 22 0.39
39 2 0.04
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.39
Consensus pattern (34 bp):
CTTGAGATTTTTTCTTAAAACCAACTTTGTCTTG
Found at i:373002 original size:144 final size:146
Alignment explanation
Indices: 372651--373063 Score: 543
Period size: 144 Copynumber: 2.8 Consensus size: 146
372641 CTTGAGGGAT
* * * *
372651 CTTCATCTCACTTGAGACAGTTTT-ACTTAAAACAAAATTTTATCTCACTC-ATGATTGTTTTTT
1 CTTCGTCTCGCTTGAGACAGTTTTCACTTGAAACAAAA-TTTATCTCACTCGA-GATAG-TTTTT
* * * *
372714 CTTAAAACAAACTTCGTCTTGCTTGAGAC-AGTTTCACTCGAAACAAAATTTTATCTCAATTGAG
63 CTTAAAACCAACTTCGTCTTGCTTGAGACAATTTTCCCTCGAAACAAAA-TTTATCTCACTTGAG
372778 ATTGTTCTTCTTAAAACAAA
127 ATTGTTCTTCTTAAAACAAA
* * * *
372798 CTTCGTCTCGCTTGAGACAG-TTTCACTCGAAACAAAAATATATCTCACTTGAGATGGTTTTTCT
1 CTTCGTCTCGCTTGAGACAGTTTTCACTTGAAAC-AAAATTTATCTCACTCGAGATAGTTTTTCT
* *
372862 TAAAACCAACTTCGTCTTGCTTGAGACAATTTTCCCTTGAAACAAAATGTATCTCACTTGAGATT
65 TAAAACCAACTTCGTCTTGCTTGAGACAATTTTCCCTCGAAACAAAATTTATCTCACTTGAGATT
*
372927 -TT-TTCTTAAAACCAA
130 GTTCTTCTTAAAACAAA
* * * *
372942 CTTTGTCTTGCTTGAGACAGTTTTCCCTTGAAACAAAATTTATCTAACTCGAGATAGTTTTTCTT
1 CTTCGTCTCGCTTGAGACAGTTTTCACTTGAAACAAAATTTATCTCACTCGAGATAGTTTTTCTT
*
373007 AAAACCAACTTCGT-TTCGCTTGAGACAATTTTCCCTCGAATCAAAATTTATCTCACT
66 AAAACCAACTTCGTCTT-GCTTGAGACAATTTTCCCTCGAAACAAAATTTATCTCACT
373064 CAAGAGAGTT
Statistics
Matches: 235, Mismatches: 25, Indels: 15
0.85 0.09 0.05
Matches are distributed among these distances:
143 2 0.01
144 108 0.46
145 13 0.06
146 52 0.22
147 55 0.23
148 5 0.02
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.38
Consensus pattern (146 bp):
CTTCGTCTCGCTTGAGACAGTTTTCACTTGAAACAAAATTTATCTCACTCGAGATAGTTTTTCTT
AAAACCAACTTCGTCTTGCTTGAGACAATTTTCCCTCGAAACAAAATTTATCTCACTTGAGATTG
TTCTTCTTAAAACAAA
Found at i:373074 original size:73 final size:73
Alignment explanation
Indices: 372680--373084 Score: 446
Period size: 73 Copynumber: 5.5 Consensus size: 73
372670 GTTTTACTTA
** *
372680 AAACAAAATTTTATCTCACTC-ATGATTGTTTTTTCTTAAAACAAACTTCGTCTTGCTTGAGAC-
1 AAACAAAA-TTTATCTCACTCGA-GAGAG-TTTTTCTTAAAACCAACTTCGTCTTGCTTGAGACA
* *
372743 AGTTTCACTCG
63 ATTTTCCCTCG
* * ** * * * *
372754 AAACAAAATTTTATCTCAATTGAGATTGTTCTTCTTAAAACAAACTTCGTCTCGCTTGAGAC-AG
1 AAACAAAA-TTTATCTCACTCGAGAGAGTTTTTCTTAAAACCAACTTCGTCTTGCTTGAGACAAT
*
372818 TTTCACTCG
65 TTTCCCTCG
* *
372827 AAACAAAAATATATCTCACTTGAGATG-GTTTTTCTTAAAACCAACTTCGTCTTGCTTGAGACAA
1 AAAC-AAAATTTATCTCACTCGAGA-GAGTTTTTCTTAAAACCAACTTCGTCTTGCTTGAGACAA
*
372891 TTTTCCCTTG
64 TTTTCCCTCG
* * * * *
372901 AAACAAAATGTATCTCACT--TGAGATTTTTTCTTAAAACCAACTTTGTCTTGCTTGAGACAGTT
1 AAACAAAATTTATCTCACTCGAGAGAGTTTTTCTTAAAACCAACTTCGTCTTGCTTGAGACAATT
*
372964 TTCCCTTG
66 TTCCCTCG
* *
372972 AAACAAAATTTATCTAACTCGAGATAGTTTTTCTTAAAACCAACTTCGT-TTCGCTTGAGACAAT
1 AAACAAAATTTATCTCACTCGAGAGAGTTTTTCTTAAAACCAACTTCGTCTT-GCTTGAGACAAT
373036 TTTCCCTCG
65 TTTCCCTCG
* * *
373045 AATCAAAATTTATCTCACTCAAGAGAGTTTCTCTTAAAAC
1 AAACAAAATTTATCTCACTCGAGAGAGTTTTTCTTAAAAC
373085 AAGTTTGTTA
Statistics
Matches: 292, Mismatches: 31, Indels: 17
0.86 0.09 0.05
Matches are distributed among these distances:
70 1 0.00
71 63 0.22
72 2 0.01
73 185 0.63
74 40 0.14
75 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (73 bp):
AAACAAAATTTATCTCACTCGAGAGAGTTTTTCTTAAAACCAACTTCGTCTTGCTTGAGACAATT
TTCCCTCG
Found at i:373601 original size:141 final size:139
Alignment explanation
Indices: 373348--373655 Score: 420
Period size: 141 Copynumber: 2.2 Consensus size: 139
373338 CCAGTGGATG
* * *
373348 GTTCATAATGAGAAGAACTTGTTTAACCTTAGCTTGGTTCATCACATATGGAGTTGAATCAGCAA
1 GTTCATAATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAA
* *
373413 CATCTCACTCAATGGATCAACATTTCTAGTGGAGAGTTCATAATGAGAAAAAATCATCCGAGAGA
66 CACCTCACTCAATGGATCAACATTTCTAGTGGAGAGTTCATAATGAGAAAAAATCATCC-AAAGA
* *
373478 GGGAGAAGAA
130 AGAAGAAGAA
* * * *
373488 GTTCATAATGAGAAGATCTTGTTCGACCTATCGCTCGATTCATCTCATATGGAGTTGAATCAGCA
1 GTTCATAATGAGAAGAACTTGTTCAACCT-TAGCTCGATTCATCACATATGGAGTTGAATCAGCA
* * * * *
373553 ACACCTCACTCGA-GCTATCAACATTTCTTGTGGAGAGTTCATAATGAGAAGAACTCATCCAAAG
65 ACACCTCACTCAATG-GATCAACATTTCTAGTGGAGAGTTCATAATGAGAAAAAATCATCCAAAG
373617 AAGAAGAAGAA
129 AAGAAGAAGAA
* *
373628 ATTCATAATGAGAAAAACTTGTTCAACC
1 GTTCATAATGAGAAGAACTTGTTCAACC
373656 ATTGTTCCAA
Statistics
Matches: 146, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
140 63 0.43
141 83 0.57
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (139 bp):
GTTCATAATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAGCAA
CACCTCACTCAATGGATCAACATTTCTAGTGGAGAGTTCATAATGAGAAAAAATCATCCAAAGAA
GAAGAAGAA
Found at i:388330 original size:14 final size:13
Alignment explanation
Indices: 388300--388357 Score: 64
Period size: 13 Copynumber: 4.3 Consensus size: 13
388290 AGAAGAGATG
388300 AAAAAATGAAA-A
1 AAAAAATGAAAGA
388312 GAAAAAATGAAATGA
1 -AAAAAATGAAA-GA
*
388327 AAAATGATGAAAGA
1 AAAA-AATGAAAGA
*
388341 AAAAAAGGAAAGA
1 AAAAAATGAAAGA
388354 AAAA
1 AAAA
388358 TTAAAAATGA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
13 22 0.56
14 10 0.26
15 7 0.18
ACGTcount: A:0.74, C:0.00, G:0.17, T:0.09
Consensus pattern (13 bp):
AAAAAATGAAAGA
Found at i:388384 original size:41 final size:41
Alignment explanation
Indices: 388297--388442 Score: 119
Period size: 40 Copynumber: 3.7 Consensus size: 41
388287 TGAAGAAGAG
* * *
388297 ATGAAAAAATGAAAAGAAAAAATGAAATGAAAAATGATGAA
1 ATGAAAAAAAGAAAAGAAAAAATAAAATGAAAAATGATAAA
* *
388338 A-GAAAAAAAGGAAAGAAAAATTAAAAATGAAAAATGA-AAA
1 ATGAAAAAAAGAAAAGAAAAAAT-AAAATGAAAAATGATAAA
* **
388378 ATG-AAAAATGAAAA-ATGAAA-AAAATGAAAAAGTGA-AAA
1 ATGAAAAAAAGAAAAGAAAAAATAAAATGAAAAA-TGATAAA
*
388416 A-GAAGAAAGAGAAAA-AATAAAATAAAA
1 ATGAA-AAAAAGAAAAGAA-AAAATAAAA
388443 GGGGGTTCAA
Statistics
Matches: 84, Mismatches: 14, Indels: 14
0.75 0.12 0.12
Matches are distributed among these distances:
37 12 0.14
38 8 0.10
39 12 0.14
40 33 0.39
41 19 0.23
ACGTcount: A:0.73, C:0.00, G:0.16, T:0.12
Consensus pattern (41 bp):
ATGAAAAAAAGAAAAGAAAAAATAAAATGAAAAATGATAAA
Found at i:388417 original size:8 final size:7
Alignment explanation
Indices: 388301--388416 Score: 95
Period size: 7 Copynumber: 16.7 Consensus size: 7
388291 GAAGAGATGA
388301 AAAAATG
1 AAAAATG
388308 -AAAA-G
1 AAAAATG
388313 AAAAAATG
1 -AAAAATG
388321 --AAATG
1 AAAAATG
388326 AAAAATG
1 AAAAATG
*
388333 ATGAAA-G
1 A-AAAATG
388340 AAAAA--
1 AAAAATG
388345 AAGGAAA-G
1 AA--AAATG
*
388353 AAAAATT
1 AAAAATG
388360 AAAAATG
1 AAAAATG
388367 AAAAATG
1 AAAAATG
388374 AAAAATG
1 AAAAATG
388381 AAAAATG
1 AAAAATG
388388 AAAAATG
1 AAAAATG
388395 AAAAAAATG
1 --AAAAATG
388404 AAAAAGTG
1 AAAAA-TG
388412 AAAAA
1 AAAAA
388417 GAAGAAAGAG
Statistics
Matches: 92, Mismatches: 4, Indels: 25
0.76 0.03 0.21
Matches are distributed among these distances:
5 8 0.09
6 10 0.11
7 54 0.59
8 13 0.14
9 7 0.08
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (7 bp):
AAAAATG
Found at i:389858 original size:55 final size:54
Alignment explanation
Indices: 389789--390209 Score: 367
Period size: 55 Copynumber: 7.7 Consensus size: 54
389779 TTTATGAAGA
* **
389789 TCGAGTTCTATACTCTCTGATGGAATAGGGAG-AGGACCCGTTTATTGAAGATTGT
1 TCGAGTTCTATACTCCCTGAACGAATAGGGAGCA-GACCCGTTT-TTGAAGATTGT
* * * *
389844 TCGAGTTCTATACTCTCTGAAAGAATAGAGAGCGGACCCGTTTTATGAAGATTGT
1 TCGAGTTCTATACTCCCTGAACGAATAGGGAGCAGACCCGTTTT-TGAAGATTGT
** * * *
389899 TCGAGTTCTATACTCTTTGAAGGAATAGGGAGCAGACACATTTGTTGAAGA---T
1 TCGAGTTCTATACTCCCTGAACGAATAGGGAGCAGACCCGTTT-TTGAAGATTGT
* * * * *
389951 T-GAGTCCTATACTCTCTGAACGAACAGGGAGCAAACCCATTTTATGAAGAATT-T
1 TCGAGTTCTATACTCCCTGAACGAATAGGGAGCAGACCCGTTTT-TGAAG-ATTGT
* * **
390005 TTGAGTTCTATACTCCCTGAATGAATAGGGAGC-GAACCTATTTTATGAAGATTGT
1 TCGAGTTCTATACTCCCTGAACGAATAGGGAGCAG-ACCCGTTTT-TGAAGATTGT
* * * * *
390060 TTGAG-TCTTATACTCCCTGAACGAATAGGGAGCGGACCCGTTTGCTAAAGTTTGT
1 TCGAGTTC-TATACTCCCTGAACGAATAGGGAGCAGACCCGTTT-TTGAAGATTGT
* ** *
390115 TCTAG-TCTCATACTCCCTGAACGAATAGGGAGCAGACATGTTTGCTGAAGATTGT
1 TCGAGTTCT-ATACTCCCTGAACGAATAGGGAGCAGACCCGTTT-TTGAAGATTGT
* *
390170 TTGAG-TCTTATACTCCCTGAAGGAATAGGGAGCAGACCCG
1 TCGAGTTC-TATACTCCCTGAACGAATAGGGAGCAGACCCG
390210 CCATTTGAAG
Statistics
Matches: 311, Mismatches: 40, Indels: 30
0.82 0.10 0.08
Matches are distributed among these distances:
50 1 0.00
51 40 0.13
52 3 0.01
54 9 0.03
55 255 0.82
56 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (54 bp):
TCGAGTTCTATACTCCCTGAACGAATAGGGAGCAGACCCGTTTTTGAAGATTGT
Found at i:389930 original size:110 final size:110
Alignment explanation
Indices: 389789--390209 Score: 432
Period size: 110 Copynumber: 3.9 Consensus size: 110
389779 TTTATGAAGA
* * * * * *
389789 TCGAGTTCTATACTCTCTGATGGAATAGGGAG-AGGACCCGTTTATTGAAGATTGTTCGAGT-TC
1 TCGAGTTCTATACTCCCTGAAGGAATAGGGAGCA-GACACATTTGTTGAAGATTGTTTGAGTCT-
* * * *
389852 TATACTCTCTGAAAGAATAGAGAGCGGACCCGTTTTATGAAGATTGT
64 TATACTCCCTGAACGAATAGGGAGCAGACCCGTTTTATGAAGATTGT
** *
389899 TCGAGTTCTATACTCTTTGAAGGAATAGGGAGCAGACACATTTGTTGAAGA----TTGAGTCCTA
1 TCGAGTTCTATACTCCCTGAAGGAATAGGGAGCAGACACATTTGTTGAAGATTGTTTGAGTCTTA
* * * *
389960 TACTCTCTGAACGAACAGGGAGCAAACCCATTTTATGAAGAATT-T
66 TACTCCCTGAACGAATAGGGAGCAGACCCGTTTTATGAAG-ATTGT
* *
390005 TTGAGTTCTATACTCCCTGAATGAATAGGGAGC-GA-ACCTATTT-TATGAAGATTGTTTGAGTC
1 TCGAGTTCTATACTCCCTGAAGGAATAGGGAGCAGACA-C-ATTTGT-TGAAGATTGTTTGAGTC
* ** * *
390067 TTATACTCCCTGAACGAATAGGGAGCGGACCCGTTTGCTAAAGTTTGT
63 TTATACTCCCTGAACGAATAGGGAGCAGACCCGTTTTATGAAGATTGT
* * ** *
390115 TCTAG-TCTCATACTCCCTGAACGAATAGGGAGCAGACATGTTTGCTGAAGATTGTTTGAGTCTT
1 TCGAGTTCT-ATACTCCCTGAAGGAATAGGGAGCAGACACATTTGTTGAAGATTGTTTGAGTCTT
*
390179 ATACTCCCTGAAGGAATAGGGAGCAGACCCG
65 ATACTCCCTGAACGAATAGGGAGCAGACCCG
390210 CCATTTGAAG
Statistics
Matches: 261, Mismatches: 35, Indels: 30
0.80 0.11 0.09
Matches are distributed among these distances:
104 1 0.00
105 4 0.02
106 81 0.31
107 3 0.01
109 5 0.02
110 163 0.62
111 3 0.01
112 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (110 bp):
TCGAGTTCTATACTCCCTGAAGGAATAGGGAGCAGACACATTTGTTGAAGATTGTTTGAGTCTTA
TACTCCCTGAACGAATAGGGAGCAGACCCGTTTTATGAAGATTGT
Found at i:390054 original size:161 final size:160
Alignment explanation
Indices: 389783--390202 Score: 431
Period size: 161 Copynumber: 2.6 Consensus size: 160
389773 ACTCATTTTA
* ** * *
389783 TGAAGATCGAGTTCTATACTCTCTGATGGAATAGGGAG-AGGACCC-GTTTATTGAAGATTGTTC
1 TGAAGATTGAG-TCTATACTCTCTGAACGAATAGGGAGCA-GACCCATTTTA-TGAAGATTGTTT
* * * *
389846 GAGTTCTATACTCTCTGAAAGAATAGAGAGCGGACCCGTTTTATGAAGATTGTTCGAGT-TCTAT
63 GAGTTCTATACTCCCTGAAAGAATAGGGAGCGAACCCATTTTATGAAGATTGTTCGAGTCT-TAT
** * *
389910 ACTCTTTGAAGGAATAGGGAGCAGACACATTTGT
127 ACTCCCTGAACGAATAGGGAGCAGACACATTTGC
* *
389944 TGAAGATTGAGTCCTATACTCTCTGAACGAACAGGGAGCAAACCCATTTTATGAAGAATT-TTTG
1 TGAAGATTGAGT-CTATACTCTCTGAACGAATAGGGAGCAGACCCATTTTATGAAG-ATTGTTTG
* * *
390008 AGTTCTATACTCCCTGAATGAATAGGGAGCGAACCTATTTTATGAAGATTGTTTGAGTCTTATAC
64 AGTTCTATACTCCCTGAAAGAATAGGGAGCGAACCCATTTTATGAAGATTGTTCGAGTCTTATAC
* * *
390073 TCCCTGAACGAATAGGGAGCGGACCCGTTTGC
129 TCCCTGAACGAATAGGGAGCAGACACATTTGC
* * * *
390105 TAAAGTTTGTTCTAGTCTCATACTCCCTGAACGAATAGGGAGCAGA--CATGTTTGCTGAAGATT
1 TGAAGATTG----AGTCT-ATACTCTCTGAACGAATAGGGAGCAGACCCAT-TTT-ATGAAGATT
*
390168 GTTTGAG-TCTTATACTCCCTGAAGGAATAGGGAGC
59 GTTTGAGTTC-TATACTCCCTGAAAGAATAGGGAGC
390203 AGACCCGCCA
Statistics
Matches: 217, Mismatches: 28, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
160 1 0.00
161 132 0.61
162 9 0.04
163 3 0.01
164 10 0.05
165 62 0.29
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (160 bp):
TGAAGATTGAGTCTATACTCTCTGAACGAATAGGGAGCAGACCCATTTTATGAAGATTGTTTGAG
TTCTATACTCCCTGAAAGAATAGGGAGCGAACCCATTTTATGAAGATTGTTCGAGTCTTATACTC
CCTGAACGAATAGGGAGCAGACACATTTGC
Found at i:390565 original size:174 final size:176
Alignment explanation
Indices: 390275--390624 Score: 686
Period size: 174 Copynumber: 2.0 Consensus size: 176
390265 ATCTTTTGAA
390275 GTTCTCAGGACCGGACAAACTCGATCATCTTTTGATCTTTGCTCTATTCTCGTTACACAACAATG
1 GTTCTCAGGACCGGACAAACTCGATCATCTTTTGATCTTTGCTCTATTCTCGTTACACAACAATG
390340 AGCAAACAGGGGCAACTGTAGATACTCGATTTGTCCAGGGTTATGTCGGAGCAGACCTG-AGCAA
66 AGCAAACAGGGGCAACTGTAGATACTCGATTTGTCCAGGGTTATGTCGGAGCAGACCTGAAGCAA
390404 TGGCAACCTAACATAAAGGCCCAACTGAAGCCCAAC-ACCCAGCAG
131 TGGCAACCTAACATAAAGGCCCAACTGAAGCCCAACAACCCAGCAG
390449 GTTCTCAGGACCGGACAAACTCGATCATCTTTTGATCTTTGCTCTATTCTCGTTACACAACAATG
1 GTTCTCAGGACCGGACAAACTCGATCATCTTTTGATCTTTGCTCTATTCTCGTTACACAACAATG
390514 AGCAAACAGGGGCAACTGTAGATACTCGATTTGTCCAGGGTTATGTCGGAGCAGACCTGAAGCAA
66 AGCAAACAGGGGCAACTGTAGATACTCGATTTGTCCAGGGTTATGTCGGAGCAGACCTGAAGCAA
390579 TGGCAACCTAACATAAAGGCCCAACTGAAGCCCAACAACCCAGCAG
131 TGGCAACCTAACATAAAGGCCCAACTGAAGCCCAACAACCCAGCAG
390625 AGTAGCTTCC
Statistics
Matches: 174, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
174 124 0.71
175 41 0.24
176 9 0.05
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.22
Consensus pattern (176 bp):
GTTCTCAGGACCGGACAAACTCGATCATCTTTTGATCTTTGCTCTATTCTCGTTACACAACAATG
AGCAAACAGGGGCAACTGTAGATACTCGATTTGTCCAGGGTTATGTCGGAGCAGACCTGAAGCAA
TGGCAACCTAACATAAAGGCCCAACTGAAGCCCAACAACCCAGCAG
Found at i:390765 original size:21 final size:21
Alignment explanation
Indices: 390739--390783 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
390729 GGTTTTATTT
* *
390739 GGGAATTAACTACTAGAAAGA
1 GGGAATTAACCACCAGAAAGA
390760 GGGAATTAACCACCAGAAAGA
1 GGGAATTAACCACCAGAAAGA
390781 GGG
1 GGG
390784 GGAGTTTACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.13, G:0.29, T:0.13
Consensus pattern (21 bp):
GGGAATTAACCACCAGAAAGA
Found at i:394428 original size:20 final size:21
Alignment explanation
Indices: 394405--394443 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
394395 AAATATAATT
*
394405 AAATATATT-AAATTATAAAA
1 AAATATATTCAAATGATAAAA
*
394425 AAATTTATTCAAATGATAA
1 AAATATATTCAAATGATAA
394444 CATTTATCAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (21 bp):
AAATATATTCAAATGATAAAA
Found at i:396582 original size:20 final size:20
Alignment explanation
Indices: 396557--396597 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
396547 ATAAAAAATT
396557 ATATTTA-TAATATTATAAAA
1 ATATTTATTAAT-TTATAAAA
396577 ATATTTATTTAATTTATAAAA
1 ATATTTA-TTAATTTATAAAA
396598 TCGAATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.37
21 8 0.42
22 4 0.21
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTTATTAATTTATAAAA
Found at i:396598 original size:20 final size:24
Alignment explanation
Indices: 396544--396598 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
396534 AAATGAAATA
*
396544 ATTATAAAAAATTATATTTATAAT
1 ATTATAAAATATTATATTTATAAT
396568 ATTATAAAAATATT-TA-TT-TAAT
1 ATTAT-AAAATATTATATTTATAAT
396590 -TTATAAAAT
1 ATTATAAAAT
396599 CGAATTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
20 5 0.17
21 4 0.14
22 4 0.14
23 2 0.07
24 7 0.24
25 7 0.24
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (24 bp):
ATTATAAAATATTATATTTATAAT
Found at i:397163 original size:25 final size:25
Alignment explanation
Indices: 397107--397169 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 25
397097 AGATAAATAT
* *
397107 TATTTTTTTAA-TATAGTTTTAAAA
1 TATTTTTTTAATTATAATGTTAAAA
* *
397131 TCTATTTTTAATTATAATGTTAAAA
1 TATTTTTTTAATTATAATGTTAAAA
*
397156 TATTTTTTTTATTA
1 TATTTTTTTAATTA
397170 ATATGAGGTA
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
24 9 0.29
25 22 0.71
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (25 bp):
TATTTTTTTAATTATAATGTTAAAA
Found at i:400804 original size:25 final size:27
Alignment explanation
Indices: 400755--400806 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
400745 GCATTTTGTT
*
400755 AATATAAATTATATATTTTATTTAATA
1 AATATAAATAATATATTTTATTTAATA
400782 AATATAAATAATAT-TTTTA-TTAATA
1 AATATAAATAATATATTTTATTTAATA
400807 TTATTTAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 6 0.25
26 5 0.21
27 13 0.54
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (27 bp):
AATATAAATAATATATTTTATTTAATA
Found at i:404719 original size:5 final size:5
Alignment explanation
Indices: 404711--404740 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
404701 AAAATAAAAG
404711 AAATT AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT AAATT
404741 TAAAAATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:404723 original size:15 final size:15
Alignment explanation
Indices: 404705--404738 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
404695 AAAATAAAAA
404705 TAAAAGAAATTAAAT
1 TAAAAGAAATTAAAT
**
404720 TAAATTAAATTAAAT
1 TAAAAGAAATTAAAT
404735 TAAA
1 TAAA
404739 TTTAAAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (15 bp):
TAAAAGAAATTAAAT
Found at i:418581 original size:5 final size:5
Alignment explanation
Indices: 418566--418643 Score: 81
Period size: 5 Copynumber: 16.0 Consensus size: 5
418556 AAACAATTAC
* * *
418566 TAAAA TAAAAA TAAAA -GAAA TAAAA TAAAA TAAAA TAAAC TAAAC TAAAA
1 TAAAA T-AAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
* *
418616 TAAAC TAAAA TAAAA -AAAA -AAGA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
418644 ATCCTAAAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
4 10 0.16
5 47 0.76
6 5 0.08
ACGTcount: A:0.77, C:0.04, G:0.03, T:0.17
Consensus pattern (5 bp):
TAAAA
Found at i:418778 original size:16 final size:17
Alignment explanation
Indices: 418752--418795 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
418742 TTAGCTAAAT
* *
418752 TTAAAAAAAATACAAAA
1 TTAAAAGAAATAAAAAA
418769 -TAAAAGAAATAAAAAA
1 TTAAAAGAAATAAAAAA
418785 TTAAAAAGAAA
1 TT-AAAAGAAA
418796 ATCAGATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 14 0.61
17 1 0.04
18 8 0.35
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (17 bp):
TTAAAAGAAATAAAAAA
Found at i:418920 original size:11 final size:11
Alignment explanation
Indices: 418904--418929 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
418894 TTTAAGAGAA
418904 AAAATGAAATT
1 AAAATGAAATT
418915 AAAATGAAATT
1 AAAATGAAATT
418926 AAAA
1 AAAA
418930 GAACCAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (11 bp):
AAAATGAAATT
Found at i:422238 original size:187 final size:186
Alignment explanation
Indices: 422014--422380 Score: 725
Period size: 187 Copynumber: 2.0 Consensus size: 186
422004 TCGAGCAATC
422014 GAATAATCGGACATCTTATGTGAAAACTCGACTCAAATTGCTCCCTAATTAAAAACTAAATTGTC
1 GAATAATCGGACATCTTATGTGAAAACTCGACTCAAATTGCTCCCTAATTAAAAACTAAATTGTC
422079 TTCCTAATTTCAAAGCCCGATTCTAATGTTAACCTAATCTAAAAACTAAGTGTAAAGATTTAAAC
66 TTCCTAATTTCAAAGCCCGATTCTAATGTTAACCTAATCTAAAAACTAAGTGTAAAGATTTAAA-
422144 TATGAAATAATAAATTATTTTAAACAACCTACTTAAGATTAAAATAAAAAAAAAAAA
130 TATGAAATAATAAATTATTTTAAACAACCTACTTAAGATTAAAATAAAAAAAAAAAA
422201 GAATAATCGGACATCTTATGTGAAAACTCGACTCAAATTGCTCCCTAATTAAAAACTAAATTGTC
1 GAATAATCGGACATCTTATGTGAAAACTCGACTCAAATTGCTCCCTAATTAAAAACTAAATTGTC
422266 TTCCTAATTTCAAAGCCCGATTCTAATGTTAACCTAATCTAAAAACTAAGTGTAAAGATTTAAAT
66 TTCCTAATTTCAAAGCCCGATTCTAATGTTAACCTAATCTAAAAACTAAGTGTAAAGATTTAAAT
422331 ATGAAATAATAAATTATTTTAAACAACCTACTTAAGATTAAAATAAAAAA
131 ATGAAATAATAAATTATTTTAAACAACCTACTTAAGATTAAAATAAAAAA
422381 CATAAAAAAA
Statistics
Matches: 180, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
186 51 0.28
187 129 0.72
ACGTcount: A:0.45, C:0.16, G:0.09, T:0.31
Consensus pattern (186 bp):
GAATAATCGGACATCTTATGTGAAAACTCGACTCAAATTGCTCCCTAATTAAAAACTAAATTGTC
TTCCTAATTTCAAAGCCCGATTCTAATGTTAACCTAATCTAAAAACTAAGTGTAAAGATTTAAAT
ATGAAATAATAAATTATTTTAAACAACCTACTTAAGATTAAAATAAAAAAAAAAAA
Found at i:424723 original size:36 final size:36
Alignment explanation
Indices: 424631--424885 Score: 141
Period size: 36 Copynumber: 6.8 Consensus size: 36
424621 CGAGATGATA
** * * *
424631 TTTGTTTTAAGAAAAACAATCTTGAGTGAAATGAAATT
1 TTTGTTTTAAGAAAAACAATCTCAAGCGAAA-CAAA-G
** *
424669 TCTTGTTTCGAGTAAAAACTATCTCAAGCGAAACAAAG
1 T-TTGTTTTAAG-AAAAACAATCTCAAGCGAAACAAAG
* * * * *
424707 ATTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTT
1 TTTGTTTTAAGAAAAACAATCTCAAGCGAAACAAA--G
** * ** * *
424745 TTTGTTTGGAGTGAAAACTGTCTCAAGCAAAACGAAG
1 TTTGTTTTAAG-AAAAACAATCTCAAGCGAAACAAAG
* * * *
424782 TTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAA
1 TTTGTTTTAAGAAAAACAATCTCAAGCGAAACAAAG
* * ** * *
424818 TTTATATTTCAAGTGAAAACTGTCTTAAGCGAAACGAAG
1 TTTGT-TTT-AAG-AAAAACAATCTCAAGCGAAACAAAG
*
424857 TTTGTTTTAAGAAAAACAACCTCAAGCGA
1 TTTGTTTTAAGAAAAACAATCTCAAGCGA
424886 GATAAAATTT
Statistics
Matches: 154, Mismatches: 55, Indels: 18
0.68 0.24 0.08
Matches are distributed among these distances:
36 53 0.34
37 23 0.15
38 15 0.10
39 47 0.31
40 16 0.10
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.31
Consensus pattern (36 bp):
TTTGTTTTAAGAAAAACAATCTCAAGCGAAACAAAG
Found at i:424787 original size:75 final size:75
Alignment explanation
Indices: 424614--424907 Score: 383
Period size: 75 Copynumber: 3.9 Consensus size: 75
424604 AGGAATACTT
* * ** * * *
424614 TCTCAAGCGAGATGATA-TTTGTTTTAAGAAAAACAATCTTGAGTGAAATGAAATTTCTTGTTTC
1 TCTCAAGCGAAACGA-AGTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAATTT-ATGTTTC
* *
424678 GAGTAAAAACTA
64 GAGTGAAAACTG
* * * * *
424690 TCTCAAGCGAAACAAAGATTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTTTTGTTTGGA
1 TCTCAAGCGAAACGAAGTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAATTTATGTTTCGA
424755 GTGAAAACTG
66 GTGAAAACTG
* * *
424765 TCTCAAGCAAAACGAAGTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAATTTATATTTCAA
1 TCTCAAGCGAAACGAAGTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAATTTATGTTTCGA
424830 GTGAAAACTG
66 GTGAAAACTG
* * *
424840 TCTTAAGCGAAACGAAGTTTGTTTTAAGAAAAACAACCTCAAGCGAGATAAAATTTATGTTTCGA
1 TCTCAAGCGAAACGAAGTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAATTTATGTTTCGA
424905 GTG
66 GTG
424908 GAATTATCTC
Statistics
Matches: 191, Mismatches: 26, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
75 146 0.76
76 45 0.24
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (75 bp):
TCTCAAGCGAAACGAAGTTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAAATTTATGTTTCGA
GTGAAAACTG
Found at i:424919 original size:38 final size:38
Alignment explanation
Indices: 424877--424967 Score: 130
Period size: 38 Copynumber: 2.4 Consensus size: 38
424867 GAAAAACAAC
* *
424877 CTCAAGCGAGATAAAA-TTTATGTTTCGAGTGGAATTAT
1 CTCAAGCGAGATAAAAGTTT-TGCTTCGAGTGAAATTAT
**
424915 CTCAAATGAGATAAAAGTTTTGCTTCGAGTGAAATTAT
1 CTCAAGCGAGATAAAAGTTTTGCTTCGAGTGAAATTAT
424953 CTCAAGCGAGATAAA
1 CTCAAGCGAGATAAA
424968 TATTGTTTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
38 43 0.93
39 3 0.07
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (38 bp):
CTCAAGCGAGATAAAAGTTTTGCTTCGAGTGAAATTAT
Found at i:425913 original size:89 final size:89
Alignment explanation
Indices: 425787--426242 Score: 637
Period size: 89 Copynumber: 5.1 Consensus size: 89
425777 AATATCTTAT
* *
425787 CAATATACATACCACTTAATCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTAAAT
1 CAATATACTTACCA-TTATTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTAAAT
*
425852 CCCTAAGCTCGTAAGCTTATTTTAT
65 CCCTAAGCTCGTAAGCTTATTTTAC
*
425877 CAATATACTTACCATTATTCCATAAGCTCGTGAGCTTATTTTACCAATATACTTACCATTAAATC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTAAATC
* *
425942 CCTAAGCTTGTAAGCTTATTTTAT
66 CCTAAGCTCGTAAGCTTATTTTAC
* *
425966 TAATATACTTACCATTATTCCATAAGCTCGTGAGCTTATTTTACCAATATACTTACCATTAAATC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTAAATC
* * *
426031 CCTAAGTTGGTAATCTTATTTTAC
66 CCTAAGCTCGTAAGCTTATTTTAC
* * * * *
426055 CCATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTAACCAATATACTTACTA-TAATTT
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTAAATC
*
426119 CATAAGCTCGTAAGCTTATTTTAC
66 CCTAAGCTCGTAAGCTTATTTTAC
* * * ** * * * * *
426143 CAACATACTTACTATAATTTTATAAGCTCATAAGCTTATTTTACCAACATACTTACTA-TAATTT
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTAAATC
*
426207 CATAAGCTCGTAAGCTTATTTTAC
66 CCTAAGCTCGTAAGCTTATTTTAC
426231 CAATATACTTAC
1 CAATATACTTAC
426243 TATAATTTGC
Statistics
Matches: 336, Mismatches: 30, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
88 114 0.34
89 209 0.62
90 13 0.04
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.39
Consensus pattern (89 bp):
CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTAAATC
CCTAAGCTCGTAAGCTTATTTTAC
Found at i:425918 original size:44 final size:44
Alignment explanation
Indices: 425787--426242 Score: 588
Period size: 44 Copynumber: 10.3 Consensus size: 44
425777 AATATCTTAT
* *
425787 CAATATACATACCACTTAATCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCA-TTATTCCATAAGCTCGTAAGCTTATTTTAC
* * *
425832 CAATATACTTACCATTAAATCCCTAAGCTCGTAAGCTTATTTTAT
1 CAATATACTTACCATT-ATTCCATAAGCTCGTAAGCTTATTTTAC
*
425877 CAATATACTTACCATTATTCCATAAGCTCGTGAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
* * * *
425921 CAATATACTTACCATTAAATCCCTAAGCTTGTAAGCTTATTTTAT
1 CAATATACTTACCATT-ATTCCATAAGCTCGTAAGCTTATTTTAC
* *
425966 TAATATACTTACCATTATTCCATAAGCTCGTGAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
* * * * *
426010 CAATATACTTACCATTAAATCCCTAAGTTGGTAATCTTATTTTAC
1 CAATATACTTACCATT-ATTCCATAAGCTCGTAAGCTTATTTTAC
* *
426055 CCATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTAAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
* * *
426099 CAATATACTTACTATAATTTCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
* * * ** *
426143 CAACATACTTACTATAATTTTATAAGCTCATAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
* * * *
426187 CAACATACTTACTATAATTTCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
426231 CAATATACTTAC
1 CAATATACTTAC
426243 TATAATTTGC
Statistics
Matches: 365, Mismatches: 43, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
44 235 0.64
45 130 0.36
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.39
Consensus pattern (44 bp):
CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
Found at i:426477 original size:60 final size:59
Alignment explanation
Indices: 426401--426554 Score: 181
Period size: 57 Copynumber: 2.6 Consensus size: 59
426391 TTTCCTGCTC
*
426401 ATTTTAGCACAC-GAAGTGCCCTATTCGAGAATCCATACCAGTAATACGATTCCTTTACCA
1 ATTTTAGCAC-CTGAAGTGCCCTATTCGAGAATCCATA-CAGTAATACGATCCCTTTACCA
* * *
426461 ATTTTAGCACCTGAAGTGCCCTATTCGAGAATCC--ACATTAGTATGATCCCTTTACCA
1 ATTTTAGCACCTGAAGTGCCCTATTCGAGAATCCATACAGTAATACGATCCCTTTACCA
* * * *
426518 TTTTTAGCACATGAAGTGCCATATAT-GAAAATCCATA
1 ATTTTAGCACCTGAAGTGCCCTAT-TCGAGAATCCATA
426555 TTCTAGTATG
Statistics
Matches: 82, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
57 46 0.56
58 2 0.02
59 2 0.02
60 32 0.39
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.31
Consensus pattern (59 bp):
ATTTTAGCACCTGAAGTGCCCTATTCGAGAATCCATACAGTAATACGATCCCTTTACCA
Found at i:426533 original size:57 final size:59
Alignment explanation
Indices: 426401--426537 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 59
426391 TTTCCTGCTC
* *
426401 ATTTTAGCACACGAAGTGCCCTATTCGAGAATCCATACCAGTAATACGATTCCTTTACCA
1 ATTTTAGCACATGAAGTGCCCTATTCGAGAATCCA-ACCAGTAATACGATCCCTTTACCA
* * * *
426461 ATTTTAGCACCTGAAGTGCCCTATTCGAGAATCC-A-CATTAGTATGATCCCTTTACCA
1 ATTTTAGCACATGAAGTGCCCTATTCGAGAATCCAACCAGTAATACGATCCCTTTACCA
*
426518 TTTTTAGCACATGAAGTGCC
1 ATTTTAGCACATGAAGTGCC
426538 ATATATGAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
57 36 0.52
58 1 0.01
60 32 0.46
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.31
Consensus pattern (59 bp):
ATTTTAGCACATGAAGTGCCCTATTCGAGAATCCAACCAGTAATACGATCCCTTTACCA
Found at i:426782 original size:177 final size:177
Alignment explanation
Indices: 426599--426942 Score: 521
Period size: 177 Copynumber: 1.9 Consensus size: 177
426589 TAGTGCTTTT
* * *
426599 TCTGGAAATCCATACACTCAGTATGATTCCCTTACCATTTTAGCACA-TATAATGC-CCTATCTG
1 TCTGGAAATCCATACACTCAATATGATTCCCTTACCATTTTAGCACACT-CAATGCTCC-ATATG
* * * *
426662 GAAATCCATATATTCAATATGATTTTCTTATCATTTTAGCACATTCAGTGCTCCATATGGAAATT
64 GAAATCCATACACTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATT
* *
426727 CATACATTTAGTATGTTTTCCTTATCATTTTAGCACATAAAATGCCCTA
129 CATACATTCAGTATGATTTCCTTATCATTTTAGCACATAAAATGCCCTA
* * * * *
426776 TCTGGAAATCCATATATTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGA
1 TCTGGAAATCCATACACTCAATATGATTCCCTTACCATTTTAGCACACTCAATGCTCCATATGGA
*
426841 AATCCATACACTCAGTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATTCA
66 AATCCATACACTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATTCA
426906 TACATTCAGTATGATTTCCTTATCATTTTAGCACATA
131 TACATTCAGTATGATTTCCTTATCATTTTAGCACATA
426943 TAGTGCCATT
Statistics
Matches: 150, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
177 147 0.98
178 3 0.02
ACGTcount: A:0.30, C:0.22, G:0.10, T:0.38
Consensus pattern (177 bp):
TCTGGAAATCCATACACTCAATATGATTCCCTTACCATTTTAGCACACTCAATGCTCCATATGGA
AATCCATACACTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATTCA
TACATTCAGTATGATTTCCTTATCATTTTAGCACATAAAATGCCCTA
Found at i:426940 original size:118 final size:118
Alignment explanation
Indices: 426519--426940 Score: 528
Period size: 118 Copynumber: 3.6 Consensus size: 118
426509 CCTTTACCAT
* * * * * * * *
426519 TTTTAGCACATGAAGTGCCATATATGAAAATCC--ATATTCTAGTATGATTTCCTTATCCTTGTA
1 TTTTAGCACATAAAATGCCCTATCTGGAAATCCATATATTC-AATATGATTTCCTTATCATTTTA
* * *** * * *
426582 GCACCCTTAGTGCTTTTTCTGGAAATCCATACACTCAGTATGATTCCCTTACCA
65 GCACACTCAGTGCTCCATATGGAAATCCATACACTCAGTATGATTTCCTTATCA
* *
426636 TTTTAGCACATATAATGCCCTATCTGGAAATCCATATATTCAATATGATTTTCTTATCATTTTAG
1 TTTTAGCACATAAAATGCCCTATCTGGAAATCCATATATTCAATATGATTTCCTTATCATTTTAG
* * * * *
426701 CACATTCAGTGCTCCATATGGAAATTCATACATTTAGTATGTTTTCCTTATCA
66 CACACTCAGTGCTCCATATGGAAATCCATACACTCAGTATGATTTCCTTATCA
426754 TTTTAGCACATAAAATGCCCTATCTGGAAATCCATATATTCAATATGATTTCCTTATCATTTTAG
1 TTTTAGCACATAAAATGCCCTATCTGGAAATCCATATATTCAATATGATTTCCTTATCATTTTAG
426819 CACACTCAGTGCTCCATATGGAAATCCATACACTCAGTATGATTTCCTTATCA
66 CACACTCAGTGCTCCATATGGAAATCCATACACTCAGTATGATTTCCTTATCA
* * * * * *
426872 TTTTAGCACACT-CAGTGCTCC-ATATGGAAATTCATACATTCAGTATGATTTCCTTATCATTTT
1 TTTTAGCACA-TAAAATGC-CCTATCTGGAAATCCATATATTCAATATGATTTCCTTATCATTTT
426935 AGCACA
64 AGCACA
426941 TATAGTGCCA
Statistics
Matches: 265, Mismatches: 36, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
117 27 0.10
118 229 0.86
119 9 0.03
ACGTcount: A:0.29, C:0.22, G:0.11, T:0.38
Consensus pattern (118 bp):
TTTTAGCACATAAAATGCCCTATCTGGAAATCCATATATTCAATATGATTTCCTTATCATTTTAG
CACACTCAGTGCTCCATATGGAAATCCATACACTCAGTATGATTTCCTTATCA
Found at i:426969 original size:59 final size:57
Alignment explanation
Indices: 426519--426949 Score: 434
Period size: 59 Copynumber: 7.3 Consensus size: 57
426509 CCTTTACCAT
* * * *
426519 TTTTAGCACATGAAGTGCCATATATGAAAATCCAT--ATTCTAGTATGATTTCCTTATCC
1 TTTTAGCACAT-TAGTGCC-CATATGGAAATCCATACATTC-AGTATGATTTCCTTATCA
* * *** * * * *
426577 TTGTAGCACCCTTAGTGCTTTTTCTGGAAATCCATACACTCAGTATGATTCCCTTACCA
1 TTTTAGCA-CATTAGTGC-CCATATGGAAATCCATACATTCAGTATGATTTCCTTATCA
* * * * *
426636 TTTTAGCACATATAATGCCCTATCTGGAAATCCATATATTCAATATGATTTTCTTATCA
1 TTTTAGCACAT-TAGTGCCC-ATATGGAAATCCATACATTCAGTATGATTTCCTTATCA
* * *
426695 TTTTAGCACATTCAGTGCTCCATATGGAAATTCATACATTTAGTATGTTTTCCTTATCA
1 TTTTAGCACATT-AGTGC-CCATATGGAAATCCATACATTCAGTATGATTTCCTTATCA
* * * * *
426754 TTTTAGCACATAAAATGCCCTATCTGGAAATCCATATATTCAATATGATTTCCTTATCA
1 TTTTAGCACAT-TAGTGCCC-ATATGGAAATCCATACATTCAGTATGATTTCCTTATCA
* *
426813 TTTTAGCACACTCAGTGCTCCATATGGAAATCCATACACTCAGTATGATTTCCTTATCA
1 TTTTAGCACA-TTAGTGC-CCATATGGAAATCCATACATTCAGTATGATTTCCTTATCA
* *
426872 TTTTAGCACACTCAGTGCTCCATATGGAAATTCATACATTCAGTATGATTTCCTTATCA
1 TTTTAGCACA-TTAGTGC-CCATATGGAAATCCATACATTCAGTATGATTTCCTTATCA
426931 TTTTAGCACATATAGTGCC
1 TTTTAGCACAT-TAGTGCC
426950 ATTTGGTAAT
Statistics
Matches: 312, Mismatches: 48, Indels: 26
0.81 0.12 0.07
Matches are distributed among these distances:
58 31 0.10
59 273 0.88
60 8 0.03
ACGTcount: A:0.29, C:0.22, G:0.11, T:0.38
Consensus pattern (57 bp):
TTTTAGCACATTAGTGCCCATATGGAAATCCATACATTCAGTATGATTTCCTTATCA
Found at i:429580 original size:28 final size:28
Alignment explanation
Indices: 429511--429580 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
429501 CACTATTTCT
* *
429511 CGAAGGACCACATATAACACATATGTCC
1 CGAAGGACCACGTAGAACACATATGTCC
429539 CGAAGGACCACGTAGAACACATATGTCC
1 CGAAGGACCACGTAGAACACATATGTCC
*
429567 CGAAGGACCTCGTA
1 CGAAGGACCACGTA
429581 AAACCCTCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.36, C:0.29, G:0.20, T:0.16
Consensus pattern (28 bp):
CGAAGGACCACGTAGAACACATATGTCC
Found at i:431524 original size:31 final size:31
Alignment explanation
Indices: 431486--431550 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
431476 AGAGTCTTGG
* *
431486 GTTTACCTATG-TCTTTTGAGACATATGGACA
1 GTTTACCTAGGTTC-TTCGAGACATATGGACA
*
431517 GTTTACCTAGGTTCTTCGAGACCTATGGACA
1 GTTTACCTAGGTTCTTCGAGACATATGGACA
431548 GTT
1 GTT
431551 GTCGAGGTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
31 28 0.93
32 2 0.07
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (31 bp):
GTTTACCTAGGTTCTTCGAGACATATGGACA
Found at i:431561 original size:30 final size:29
Alignment explanation
Indices: 431501--431584 Score: 80
Period size: 30 Copynumber: 2.8 Consensus size: 29
431491 CCTATGTCTT
* *
431501 TTGAGACATATGGACAGTT-TACCTAGGTTC
1 TTGAGACCTATGGACAGTTGT--CGAGGTTC
431531 TTCGAGACCTATGGACAGTTGTCGAGGTTC
1 TT-GAGACCTATGGACAGTTGTCGAGGTTC
* * *
431561 TTTATGACCTCTGGATAGTTGTCG
1 TTGA-GACCTATGGACAGTTGTCG
431585 GGGTCTTTGT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
29 1 0.02
30 28 0.61
31 16 0.35
32 1 0.02
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (29 bp):
TTGAGACCTATGGACAGTTGTCGAGGTTC
Found at i:431600 original size:29 final size:30
Alignment explanation
Indices: 431536--431607 Score: 101
Period size: 29 Copynumber: 2.4 Consensus size: 30
431526 GGTTCTTCGA
* * *
431536 GACCTATGGACAGTTGTCGAGGTTCTTTAT
1 GACCTCTGGATAGTTGTCGAGGGTCTTTAT
*
431566 GACCTCTGGATAGTTGTCG-GGGTCTTTGT
1 GACCTCTGGATAGTTGTCGAGGGTCTTTAT
431595 GACCTCTGGATAG
1 GACCTCTGGATAG
431608 GTCCTTCGAG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
29 21 0.55
30 17 0.45
ACGTcount: A:0.17, C:0.18, G:0.31, T:0.35
Consensus pattern (30 bp):
GACCTCTGGATAGTTGTCGAGGGTCTTTAT
Found at i:431837 original size:23 final size:22
Alignment explanation
Indices: 431807--431853 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 22
431797 TGATTCTTGG
431807 TGATATGA-ACTGTATTATATGAT
1 TGATATGAGA-TGT-TTATATGAT
431830 TGATATGATGATGTTTATATGAT
1 TGATATGA-GATGTTTATATGAT
431853 T
1 T
431854 TGAAGGAGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 18 0.82
24 3 0.14
25 1 0.05
ACGTcount: A:0.32, C:0.02, G:0.19, T:0.47
Consensus pattern (22 bp):
TGATATGAGATGTTTATATGAT
Found at i:438364 original size:28 final size:28
Alignment explanation
Indices: 438324--438430 Score: 169
Period size: 28 Copynumber: 3.8 Consensus size: 28
438314 AATACCACTT
*
438324 TGTCCCGAAGGACCACATAGAACACATA
1 TGTCCCGAAGGACCACGTAGAACACATA
*
438352 TGTCCCAAAGGACCACGTAGAACACATA
1 TGTCCCGAAGGACCACGTAGAACACATA
* *
438380 TGTCCCGAAGGATCACGTAAAACACATA
1 TGTCCCGAAGGACCACGTAGAACACATA
*
438408 TATCCCGAAGGACCACGTAGAAC
1 TGTCCCGAAGGACCACGTAGAAC
438431 CCTCTACTCT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 71 1.00
ACGTcount: A:0.38, C:0.28, G:0.19, T:0.15
Consensus pattern (28 bp):
TGTCCCGAAGGACCACGTAGAACACATA
Found at i:450167 original size:13 final size:13
Alignment explanation
Indices: 450149--450174 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
450139 TAAATAGTGC
450149 ACAAATATAAATT
1 ACAAATATAAATT
450162 ACAAATATAAATT
1 ACAAATATAAATT
450175 GAGTATTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
ACAAATATAAATT
Found at i:459416 original size:144 final size:144
Alignment explanation
Indices: 459181--459468 Score: 416
Period size: 144 Copynumber: 2.0 Consensus size: 144
459171 GCAGTAAAAG
**
459181 ATGTGAGTACTGGAAATGTTAATGGAGGAAGTATTTCTGCTGCTACAAACTCTAATGCAGTATCA
1 ATGTGAGTACTGGAAATGTTAATGGAGGAAGTATTTCTGCAACTACAAACTCTAATGCAGTATCA
* * * * * * *
459246 TATGGGACTTGTCCTGGAAGATAAAAAGTTTGTTCTGATAATGTGGATGTTTAGGTGACTGAACA
66 GATGGGACTTATCCTGGAAGAGAAAAAGTTTGTTATGATAAGGTGGATGTTCAGGTGACTAAACA
*
459311 GATTGATAAAGAGA
131 AATTGATAAAGAGA
* * * *
459325 ATGTGAGTACTGTAAATGTTAATGGTGGAAGTATTTCTGCAACTACAAACTCTAATGTAGTGTCA
1 ATGTGAGTACTGGAAATGTTAATGGAGGAAGTATTTCTGCAACTACAAACTCTAATGCAGTATCA
*
459390 GATGGGATTTATCCTGGTAA-AGAAAAAGTTTGTTATGATAAGGTGGATGTTCAGGTGACTAAAC
66 GATGGGACTTATCCTGG-AAGAGAAAAAGTTTGTTATGATAAGGTGGATGTTCAGGTGACTAAAC
*
459454 AAATTGATCAAGAGA
130 AAATTGATAAAGAGA
459469 GAGCTATCAC
Statistics
Matches: 127, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
144 125 0.98
145 2 0.02
ACGTcount: A:0.34, C:0.10, G:0.25, T:0.31
Consensus pattern (144 bp):
ATGTGAGTACTGGAAATGTTAATGGAGGAAGTATTTCTGCAACTACAAACTCTAATGCAGTATCA
GATGGGACTTATCCTGGAAGAGAAAAAGTTTGTTATGATAAGGTGGATGTTCAGGTGACTAAACA
AATTGATAAAGAGA
Found at i:463375 original size:18 final size:18
Alignment explanation
Indices: 463344--463378 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
463334 CGATTCAATA
**
463344 TAATAATTTTAATTTTAT
1 TAATAATTGAAATTTTAT
463362 TAATAATTGAAATTTTA
1 TAATAATTGAAATTTTA
463379 AGTTAAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (18 bp):
TAATAATTGAAATTTTAT
Found at i:463752 original size:21 final size:21
Alignment explanation
Indices: 463722--463775 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
463712 CGGTTCCACC
*
463722 TAAATTTTTTTG-ATTTTTTAT
1 TAAATTTTTTAGTA-TTTTTAT
463743 TAAATGTTTTTAGTATTTTTAT
1 TAAAT-TTTTTAGTATTTTTAT
*
463765 TTAATTTTTTA
1 TAAATTTTTTA
463776 AATAATTATG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 11 0.38
22 17 0.59
23 1 0.03
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.69
Consensus pattern (21 bp):
TAAATTTTTTAGTATTTTTAT
Found at i:476127 original size:6 final size:6
Alignment explanation
Indices: 476116--476156 Score: 73
Period size: 6 Copynumber: 6.8 Consensus size: 6
476106 GACACGTATT
*
476116 ACCACG ACCACG ACCACG ACCACC ACCACG ACCACG ACCAC
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCAC
476157 CAGCCGAGCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.34, C:0.54, G:0.12, T:0.00
Consensus pattern (6 bp):
ACCACG
Done.