Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006193.1 Hibiscus syriacus cultivar Beakdansim tig00014737_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63120

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3957--4045
34
2.6
34
78
7
83
41
12
15
30
1.84
10047--10086
18
2.2
18
86
0
53
25
7
0
67
1.16
10168--10255
31
2.8
30
83
8
95
15
11
1
71
1.20
15483--15657
86
2.0
86
94
0
305
31
26
22
19
1.98
15514--15674
86
1.9
86
92
0
250
31
27
21
19
1.98
15743--16722
199
4.9
200
82
4
1009
33
19
19
27
1.96
15743--16677
393
2.4
393
83
4
1108
33
19
19
27
1.96
17697--17739
18
2.4
18
88
0
59
20
9
0
69
1.15
17939--17980
16
2.6
16
84
0
57
35
4
0
59
1.19
23161--23348
86
2.2
86
90
0
295
30
25
23
20
1.99
23415--24349
200
4.7
200
84
3
1136
32
19
20
27
1.97
23414--24349
394
2.4
394
84
3
1184
32
19
20
27
1.97
24539--24576
19
2.0
19
100
0
76
47
15
21
15
1.82
24691--24719
12
2.3
13
94
5
51
37
0
0
62
0.96
25392--25434
18
2.4
18
92
0
68
20
6
0
72
1.08
25483--25571
5
16.6
5
71
21
56
15
6
2
75
1.11
25504--25533
16
1.9
16
93
6
53
13
3
3
80
0.97
25486--25570
34
2.6
32
78
12
102
14
7
2
76
1.09
25504--25571
14
4.3
15
73
21
59
13
7
2
76
1.11
37329--37359
7
4.4
7
100
0
62
61
0
12
25
1.32
39284--39369
31
2.8
30
75
7
84
32
16
13
37
1.88
39378--39470
32
3.0
31
79
3
123
27
10
16
45
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42089--42184
43
2.2
43
83
3
111
29
28
20
21
1.98
49824--50389
112
5.1
112
95
0
1010
26
11
8
53
1.65
50527--50650
20
6.2
20
83
3
160
33
20
18
27
1.96
50507--50638
40
3.3
40
81
9
153
31
23
18
26
1.97
50540--50674
40
3.4
38
82
11
119
36
20
17
25
1.95
50722--50870
19
7.7
19
85
4
183
36
20
10
32
1.87
50563--50871
20
15.6
20
83
7
203
39
20
13
26
1.90
53945--53980
18
2.0
18
94
0
63
58
22
0
19
1.40
54255--54279
13
1.9
13
100
0
50
64
16
8
12
1.49
54288--54344
20
2.8
20
81
0
78
22
19
21
36
1.95
54328--54382
20
3.0
20
65
29
59
32
23
21
21
1.98
54327--54394
34
2.0
34
97
0
127
36
22
20
20
1.95
54329--54412
34
2.5
34
88
3
116
34
23
19
22
1.96
54400--54440
20
2.0
20
100
0
82
17
19
24
39
1.92
55718--55756
20
2.0
20
89
0
60
30
33
15
20
1.94

Tables:   1

The End!