Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006196.1 Hibiscus syriacus cultivar Beakdansim tig00014748_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68807

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11286--11324
19
2.1
19
100
0
78
30
15
20
33
1.94
16107--16149
21
2.0
21
95
0
77
25
18
11
44
1.84
16109--16161
21
2.5
21
84
6
54
28
20
13
37
1.90
19590--19667
20
3.9
20
76
8
70
25
16
21
35
1.94
19635--19675
20
2.0
21
90
9
68
29
14
21
34
1.93
21440--21469
11
2.7
11
94
0
51
43
46
3
6
1.46
28814--28853
20
2.0
20
85
9
55
32
7
0
60
1.25
29125--29152
14
2.0
14
100
0
56
14
21
14
50
1.78
30242--30280
20
2.0
20
85
10
53
41
2
7
48
1.45
35532--35685
29
5.4
28
85
5
166
42
22
5
30
1.75
35532--35680
57
2.6
57
81
8
176
42
20
5
30
1.74
35687--35724
17
2.2
17
90
0
58
15
23
39
21
1.92
40264--40336
8
10.1
8
77
19
56
31
1
1
65
1.09
40266--40329
8
9.1
7
79
17
71
29
1
1
67
1.09
40267--40336
14
5.0
14
78
16
65
30
1
1
67
1.08
40266--40329
21
3.0
21
84
8
94
29
1
1
67
1.09
44130--44207
18
4.4
18
75
3
77
38
11
10
39
1.76
45784--45924
54
2.6
54
88
3
194
32
19
17
29
1.95
52718--52863
55
2.7
55
94
0
247
30
22
18
28
1.97
58172--58211
20
2.0
20
95
0
71
52
10
15
22
1.71
68168--68241
37
2.0
38
86
2
105
47
35
8
9
1.66

Tables:   1

The End!