genome.fa.s6197.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006197.1 Hibiscus syriacus cultivar Beakdansim tig00014753_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150453

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9963--10062	29	3.4	29	75	8	96	56	5	15	24	1.59
9952--10031	14	5.6	14	70	11	54	57	5	11	26	1.54
10282--10307	6	4.3	6	100	0	52	61	0	0	38	0.96
12160--12200	20	2.0	20	100	0	82	56	24	14	4	1.58
19752--19795	21	2.0	22	86	8	63	52	4	29	13	1.60
24420--24467	20	2.5	20	86	3	62	27	27	18	27	1.98
33792--33825	9	3.8	9	92	0	59	50	14	0	35	1.44
33792--33828	18	2.1	18	100	0	74	48	18	0	32	1.49
39883--39922	21	1.9	21	85	10	55	35	10	2	52	1.48
50033--50291	115	2.3	115	96	0	475	33	13	15	36	1.87
52356--52397	22	1.9	22	85	9	59	28	9	26	35	1.88
53083--53141	18	3.3	18	83	4	75	30	3	13	52	1.57
53074--53123	18	2.9	17	85	5	73	32	2	14	52	1.53
53074--53164	35	2.6	35	83	0	119	31	6	14	47	1.70
53072--53164	17	5.2	18	81	11	84	32	6	13	47	1.69
53641--53675	16	2.2	16	90	10	54	28	0	0	71	0.86
53647--53687	19	2.2	18	86	4	55	24	0	0	75	0.80
54836--54904	30	2.2	30	85	15	95	34	5	17	42	1.73
54845--54904	30	2.0	30	93	6	104	33	6	16	43	1.74
54984--55082	21	4.7	21	78	9	112	23	36	19	21	1.95
54984--55082	42	2.4	42	88	6	139	23	36	19	21	1.95
55099--55137	20	2.0	19	90	5	60	23	25	17	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55103--55185	41	2.0	41	84	13	109	22	25	24	27	2.00
58300--58368	30	2.2	30	85	15	95	34	5	17	42	1.73
58309--58368	30	2.0	31	93	6	106	33	6	16	43	1.74
58448--58505	21	2.8	21	94	0	107	20	39	18	20	1.92
58448--58546	42	2.4	41	83	10	112	22	34	20	23	1.97
58563--58601	20	2.0	19	95	5	69	20	25	20	33	1.97
59987--60042	21	2.7	21	94	0	94	26	30	21	21	1.98
62302--62390	24	3.8	24	65	21	62	31	5	21	41	1.76
62846--62903	27	2.1	29	83	6	75	48	5	1	44	1.35
62754--63006	38	6.5	37	77	11	168	47	5	2	44	1.41
62754--63006	78	3.2	79	80	9	227	47	5	2	44	1.41
62785--63026	40	6.0	39	78	11	240	44	6	3	45	1.46
63033--63088	2	28.5	2	96	3	105	50	0	0	50	1.00
63896--64074	49	3.6	49	84	4	234	25	23	17	32	1.97
64621--64668	21	2.3	21	85	0	60	35	16	14	33	1.89
68493--68588	27	3.5	27	84	5	129	34	11	6	47	1.65
68592--68627	11	3.3	11	88	0	54	27	0	0	72	0.85
68629--68699	30	2.4	30	86	9	94	26	9	1	61	1.35
68645--68722	29	2.7	28	86	7	102	26	7	3	61	1.41
73987--74049	31	2.0	31	93	0	108	33	7	30	28	1.86
77026--77095	31	2.3	31	80	2	79	50	7	8	34	1.61
78416--78508	39	2.4	39	87	0	123	17	25	24	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82192--82268	39	2.0	39	89	0	118	14	23	23	38	1.91
82248--82282	18	1.9	18	100	0	70	22	17	25	34	1.96
87288--87375	46	1.9	46	90	0	140	23	21	12	42	1.87
87383--87519	49	2.8	48	86	4	177	31	24	15	28	1.95
87475--87865	81	4.8	82	87	3	536	30	23	11	35	1.90
87952--88075	54	2.3	54	82	8	162	33	19	14	32	1.92
92905--92995	46	2.0	46	93	0	155	46	15	12	26	1.81
100665--100702	2	19.0	2	100	0	76	50	0	0	50	1.00
102417--102819	159	2.5	158	83	5	504	28	17	6	47	1.73
103039--103098	20	3.1	19	77	18	61	55	1	1	41	1.20
103057--103105	20	2.6	19	81	15	57	57	2	2	38	1.22
110107--110156	18	2.6	19	79	17	59	28	20	28	24	1.99
111609--111696	37	2.4	37	79	7	99	15	11	36	36	1.84
111879--111956	37	2.1	37	82	0	93	17	11	39	30	1.86
116208--116232	9	2.8	9	100	0	50	48	12	8	32	1.69
116246--116636	186	2.1	184	92	1	640	45	8	3	41	1.52
117790--117939	64	2.4	63	81	6	153	30	15	22	32	1.94
118156--118253	23	4.3	23	80	2	99	35	21	23	19	1.96
118355--118601	44	5.6	44	90	0	350	37	20	5	36	1.77
118446--118600	14	10.6	14	69	20	86	38	20	6	34	1.78
118355--118629	88	3.1	87	82	4	232	38	20	6	34	1.77
120830--120942	31	3.7	30	77	12	95	45	7	9	37	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122621--122652	15	2.1	15	100	0	64	12	40	6	40	1.68
130290--130320	13	2.5	13	94	5	55	67	0	0	32	0.91
133367--133463	43	2.2	44	85	1	124	30	21	9	38	1.85
148347--148524	59	3.1	59	90	1	261	27	15	21	34	1.94

Tables:   1

The End!