Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006199.1 Hibiscus syriacus cultivar Beakdansim tig00014757_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74068

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3672--3710
15
2.6
15
87
0
60
46
12
12
28
1.79
4101--4155
13
4.2
13
75
13
58
49
12
3
34
1.59
4141--4239
33
3.0
33
91
1
155
45
14
7
33
1.71
4234--4273
21
1.9
21
94
0
71
47
7
15
30
1.72
6560--6591
12
2.7
12
95
0
55
15
18
18
46
1.84
15419--15449
14
2.2
14
94
0
53
58
6
16
19
1.59
15445--15484
20
2.0
20
90
0
62
55
15
12
17
1.70
26003--26070
3
22.7
3
100
0
136
67
0
0
32
0.91
28027--28064
17
2.2
17
100
0
76
63
5
5
26
1.37
28620--28645
2
13.0
2
100
0
52
50
0
0
50
1.00
30034--30070
6
6.5
6
93
3
51
18
0
8
72
1.08
33170--33198
2
14.5
2
100
0
58
51
0
0
48
1.00
34744--34787
12
3.7
12
84
0
61
52
34
6
6
1.55
34759--34793
18
1.9
18
94
0
61
54
34
8
2
1.46
34735--34793
6
9.8
6
81
0
55
49
33
11
5
1.62
36185--36217
14
2.3
15
94
5
59
78
0
21
0
0.75
38015--38048
16
2.3
15
90
10
52
0
11
0
88
0.52
40112--40236
31
4.0
31
89
0
178
20
18
22
38
1.93
40286--40499
31
6.9
31
91
2
313
22
20
21
35
1.96
40647--40685
18
2.2
17
90
4
60
51
0
25
23
1.49
44989--45014
2
13.0
2
100
0
52
0
50
0
50
1.00
46170--46286
15
7.5
15
80
14
130
45
0
2
52
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46293--46333
22
1.9
22
95
5
75
34
0
14
51
1.43
46184--46398
69
3.2
67
77
11
210
40
0
7
52
1.31
46315--46395
32
2.5
31
94
5
144
34
0
11
54
1.36
46366--46439
22
3.2
23
76
14
71
29
0
16
54
1.43
46373--46440
26
2.9
23
82
10
84
29
0
17
52
1.45
46422--46539
31
3.7
31
97
1
218
35
0
11
53
1.36
46521--46560
21
1.9
21
100
0
80
35
0
12
52
1.39
46436--46565
62
2.1
62
83
9
158
36
0
9
54
1.32
53282--53325
6
7.3
6
100
0
88
0
31
0
68
0.90
55865--55972
43
2.5
44
90
3
173
29
25
17
26
1.98
55943--55995
23
2.3
23
87
6
72
32
28
15
24
1.95
55993--56033
21
2.0
21
85
0
55
39
21
14
24
1.91
57294--57325
15
2.1
15
100
0
64
53
0
18
28
1.45
61020--61086
30
2.2
31
86
2
91
29
4
13
52
1.60
62316--62368
19
2.8
19
78
13
56
24
7
1
66
1.28
66891--66924
2
17.0
2
100
0
68
50
0
0
50
1.00

Tables:   1

The End!