genome.fa.s62.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000062.1 Hibiscus syriacus cultivar Beakdansim tig00000101_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  175151

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2157--2189	17	2.0	17	88	5	50	48	30	0	21	1.50
4981--5069	9	10.3	9	71	23	59	57	3	0	39	1.15
4980--5066	16	5.4	16	78	14	90	56	3	0	40	1.16
4981--5069	14	6.8	13	67	22	53	57	3	0	39	1.15
16812--16956	42	3.5	41	71	12	134	26	20	18	35	1.95
16854--17038	41	4.5	41	81	6	221	27	18	18	35	1.94
16793--16997	83	2.5	83	93	0	338	27	18	19	35	1.95
17132--17253	20	6.1	20	85	0	154	38	18	18	24	1.93
23036--23085	18	2.7	18	81	6	55	50	8	2	40	1.43
32341--32522	43	3.9	45	80	13	199	46	3	9	40	1.54
32312--32522	23	9.1	22	77	17	169	45	3	9	40	1.54
32459--32574	61	1.9	61	87	3	171	43	3	10	43	1.55
32506--32536	14	2.2	14	94	0	53	48	6	9	35	1.62
32540--32584	19	2.4	19	85	7	56	44	2	8	44	1.47
33856--34067	113	1.9	113	86	1	302	34	15	24	25	1.95
34377--34419	16	2.8	16	80	16	54	74	2	18	4	1.10
36921--37138	104	2.1	104	95	3	361	21	18	2	57	1.53
43149--43185	19	1.9	19	88	0	56	10	13	13	62	1.55
45800--45885	29	2.9	30	78	5	93	43	5	19	31	1.75
46819--46852	11	3.2	11	83	8	52	55	17	11	14	1.68
49047--49077	16	2.0	15	93	6	53	58	0	0	41	0.98
56912--56955	2	21.5	2	95	4	79	50	2	0	47	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58747--58819	24	3.0	24	84	4	58	10	13	24	50	1.74
58757--58813	14	4.4	14	76	17	59	8	12	24	54	1.65
58758--58832	24	3.1	24	88	3	89	12	10	21	56	1.66
59544--59616	16	4.7	16	89	3	105	10	10	17	60	1.58
59911--60049	39	3.6	39	82	0	163	31	21	28	17	1.97
60814--60871	23	2.5	23	94	0	98	13	18	48	18	1.81
61235--61558	161	2.0	163	98	1	634	34	11	12	41	1.79
79711--79750	20	1.9	21	90	10	64	37	0	0	62	0.95
79937--79971	2	17.5	2	100	0	70	51	0	0	48	1.00
80388--80420	2	16.5	2	100	0	66	51	0	0	48	1.00
79750--80654	449	2.0	451	95	0	1616	36	16	12	34	1.86
82208--82262	18	3.1	19	69	12	53	52	0	0	47	1.00
82183--82273	35	2.5	36	77	15	98	49	0	0	50	1.00
82910--82984	37	2.0	37	82	10	91	46	4	1	48	1.29
85570--85631	24	2.6	24	94	0	106	50	9	24	16	1.75
86887--87015	64	2.0	64	95	0	231	42	13	8	35	1.74
86889--87041	64	2.4	64	85	4	157	46	11	9	32	1.72
88426--88564	35	3.9	35	82	1	170	18	23	20	36	1.95
88723--88752	15	2.0	15	100	0	60	33	13	40	13	1.83
88829--89287	229	2.0	230	99	0	911	27	19	25	27	1.99
91618--91644	2	13.5	2	100	0	54	48	0	0	51	1.00
96082--96142	31	2.0	31	96	0	113	37	13	24	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96084--96157	31	2.4	31	88	0	103	37	13	22	25	1.91
103866--104001	67	2.0	67	92	1	229	37	11	5	44	1.65
106556--106675	39	3.1	39	78	9	120	45	0	18	35	1.50
110549--110993	53	8.4	53	89	1	658	28	16	17	38	1.91
113048--113091	22	2.0	23	82	13	56	27	13	22	36	1.92
113841--114048	77	2.7	77	88	2	296	20	23	31	24	1.98
114639--114682	17	2.6	17	85	7	63	56	29	0	13	1.38
114634--114685	9	6.4	8	77	18	54	59	26	0	13	1.34
116609--116670	20	3.0	20	77	11	72	12	25	38	22	1.90
122437--122636	75	2.6	77	88	3	280	19	23	33	23	1.97
127175--127677	53	9.5	53	86	1	641	26	14	19	40	1.90
137171--137713	273	2.0	270	98	1	1043	29	12	24	32	1.92
147082--147151	20	3.5	20	92	1	106	32	10	20	37	1.85
147280--147494	6	35.8	6	88	0	205	42	46	8	2	1.47
147632--147775	2	74.0	2	90	5	233	51	46	0	1	1.14
147351--147959	281	2.2	274	89	2	930	41	30	9	19	1.83
147908--147959	2	26.5	2	96	3	97	51	48	0	0	1.00
147969--148026	19	3.0	19	94	2	98	27	8	20	43	1.81
148153--148183	4	7.8	4	100	0	62	51	25	0	22	1.48
147980--148408	215	2.0	214	95	0	768	35	13	14	36	1.86
148368--148398	4	7.8	4	92	0	53	54	25	0	19	1.44
148726--149030	160	1.9	161	83	9	401	39	10	12	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151014--151061	2	24.0	2	100	0	96	50	0	0	50	1.00
152163--152208	23	2.0	24	83	12	60	28	21	23	26	1.99
152199--152230	13	2.4	14	94	5	57	28	12	21	37	1.90
153814--154040	74	3.0	75	90	3	341	43	17	14	24	1.87
154804--154845	20	2.2	19	83	12	50	45	11	2	40	1.54
155836--155935	51	2.0	51	88	7	150	54	4	3	39	1.35
156807--156902	50	1.9	50	89	4	149	26	17	20	35	1.95
157991--158043	16	3.3	16	97	0	97	32	7	11	49	1.67
158237--158600	129	2.8	131	89	2	549	38	17	12	32	1.87
159796--160861	6	181.3	6	94	4	1928	50	16	0	33	1.46
168148--168195	21	2.3	21	78	7	53	66	6	0	27	1.15
169418--169535	3	41.0	3	85	11	167	66	0	1	31	1.01
169722--170569	122	6.9	122	88	2	1096	27	19	14	39	1.90
170951--171035	22	3.9	22	87	0	116	36	15	12	35	1.86
171658--171713	18	3.1	18	97	0	103	51	1	10	35	1.47
172073--172132	8	7.8	8	79	20	74	10	11	0	78	0.97
172090--172138	15	3.1	15	88	5	62	8	14	0	77	0.98

Tables:   1

The End!