genome.fa.s6200.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006200.1 Hibiscus syriacus cultivar Beakdansim tig00014758_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90430

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8471--8505	18	1.9	18	88	11	54	5	20	37	37	1.76
9427--9508	31	2.6	31	92	0	137	19	12	20	47	1.81
9561--9640	23	3.4	23	72	3	70	62	16	8	12	1.53
9829--9872	14	3.4	14	70	23	51	56	18	11	13	1.66
22071--22228	21	7.8	20	70	7	77	37	24	17	19	1.93
22196--22506	20	15.5	20	81	6	79	34	26	19	20	1.96
22196--22563	40	9.2	40	87	3	431	35	25	18	20	1.95
22234--22563	20	16.5	19	85	5	390	33	25	18	21	1.96
23260--23305	24	2.0	23	87	12	67	26	15	21	36	1.93
25781--26085	19	17.4	19	79	17	365	46	18	21	13	1.83
25781--26107	33	9.4	34	80	13	225	45	18	22	14	1.84
25781--26066	84	3.3	85	87	9	370	46	18	22	13	1.83
25931--26026	13	7.6	13	65	18	51	46	15	21	15	1.83
25847--26107	109	2.5	108	91	6	423	45	17	22	14	1.84
25847--26107	52	4.9	52	89	8	370	45	17	22	14	1.84
26114--26195	19	4.6	18	78	18	100	14	24	18	42	1.87
26301--26337	14	2.6	14	91	0	65	45	21	0	32	1.52
28284--28340	14	3.7	14	77	20	60	45	22	21	10	1.82
28265--28357	33	2.8	33	93	0	159	47	21	19	11	1.81
28228--28362	19	7.6	19	76	16	119	45	23	18	11	1.82
28358--28485	19	7.3	19	73	19	116	8	17	28	45	1.78
28358--28448	32	2.8	34	90	6	143	7	18	28	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28529--28905	92	4.1	93	97	1	717	46	18	12	22	1.83
28527--28905	183	2.1	185	96	2	719	46	18	12	22	1.83
30610--30699	14	5.7	14	74	23	81	42	23	25	8	1.83
30602--30716	33	3.5	33	95	0	212	45	20	24	9	1.81
30609--30721	19	6.8	18	72	23	88	43	22	24	9	1.83
30733--30787	14	3.6	14	73	21	56	9	25	23	41	1.83
30717--30787	33	2.2	33	94	0	124	8	22	25	43	1.81
30728--30809	33	2.5	33	89	2	119	9	25	21	42	1.84
30740--30828	20	4.8	20	72	19	75	12	24	19	43	1.85
30908--30978	33	2.2	33	92	0	115	47	16	22	12	1.80
31158--31212	22	2.5	22	81	0	74	20	16	40	23	1.91
31358--31550	20	9.6	20	82	5	219	19	19	25	35	1.95
31358--31550	60	3.2	60	83	0	251	19	19	25	35	1.95
39810--39880	28	2.6	28	84	6	92	42	33	0	23	1.55
41223--41250	2	14.0	2	100	0	56	50	0	0	50	1.00
49908--49946	20	2.0	20	89	0	60	43	5	10	41	1.61
49907--50053	53	2.9	52	85	10	221	34	6	10	48	1.62
50009--50047	20	2.0	20	94	0	69	35	5	12	46	1.65
54611--54701	20	4.9	20	65	20	63	35	5	14	45	1.68
54610--54759	53	2.9	52	94	3	266	33	6	12	48	1.66
54716--54755	20	2.0	20	95	0	71	37	5	12	45	1.64
56014--56048	18	1.9	18	94	0	61	40	0	25	34	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58684--58779	47	2.0	47	87	0	138	16	16	16	50	1.79
59495--59543	25	2.0	25	87	0	71	24	16	22	36	1.94
65803--65841	14	2.8	14	84	0	51	58	12	0	28	1.34
78673--78702	16	1.9	15	93	6	51	43	0	13	43	1.43
79352--79383	13	2.5	13	100	0	64	62	6	12	18	1.50
81050--81956	235	3.8	235	86	6	1270	25	19	15	39	1.91
81405--81956	122	4.6	122	90	4	824	25	20	15	38	1.92
81050--81956	478	1.9	480	95	0	1640	25	19	15	39	1.91
81968--82225	73	3.5	73	85	4	358	37	12	18	31	1.88
82043--82218	36	4.8	36	67	8	97	37	11	18	31	1.88

Tables:   1

The End!