genome.fa.s6202.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006202.1 Hibiscus syriacus cultivar Beakdansim tig00014768_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60629

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1022--1059	17	2.2	18	90	4	60	44	7	2	44	1.47
1127--1172	21	2.2	21	96	0	83	13	30	4	52	1.59
1325--1369	19	2.4	19	92	3	74	37	20	0	42	1.52
1756--2402	182	3.6	181	87	1	850	27	14	13	44	1.83
5269--5303	14	2.5	14	95	0	61	62	14	8	14	1.53
5589--5653	30	2.1	31	88	2	96	30	10	27	30	1.91
17750--17798	19	2.5	20	90	3	73	36	4	4	55	1.38
20791--20832	22	1.9	22	95	0	75	42	26	23	7	1.80
21121--21167	23	2.0	23	87	0	67	27	19	21	31	1.97
23366--23418	23	2.3	23	87	9	74	35	15	1	47	1.56
31755--31785	12	2.6	12	94	0	53	19	45	16	19	1.86
31804--31893	4	24.5	4	67	17	52	50	0	0	50	1.00
31804--31893	6	16.3	6	75	17	52	50	0	0	50	1.00
31802--31893	40	2.3	40	90	5	143	50	0	0	50	1.00
31848--31893	15	2.8	17	75	21	53	47	0	0	52	1.00
33486--33853	20	18.2	20	78	14	339	40	23	19	15	1.90
33486--33853	40	9.1	40	88	6	485	40	23	19	15	1.90
33949--34016	6	11.5	6	98	1	129	32	51	16	0	1.45
34518--34550	6	5.5	6	100	0	66	0	15	51	33	1.43
34654--34852	20	9.8	20	84	11	262	17	20	26	36	1.94
34646--34933	40	7.1	40	81	11	286	15	19	23	41	1.90
34646--34933	20	14.2	20	76	14	204	15	19	23	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35200--35275	35	2.2	35	87	0	107	43	21	0	35	1.53
41923--41978	24	2.3	24	75	6	69	26	21	25	26	1.99
42754--42940	64	2.9	64	81	4	173	29	22	17	29	1.97
42782--42961	64	2.8	63	80	10	204	28	24	17	29	1.97
50295--50338	21	2.1	21	82	0	52	9	43	15	31	1.79
51375--51561	64	2.9	64	80	4	173	30	22	17	29	1.96
51403--51582	64	2.8	63	81	9	211	28	23	17	29	1.97
52378--52519	53	2.6	54	86	5	182	27	22	19	30	1.98

Tables:   1

The End!