Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006203.1 Hibiscus syriacus cultivar Beakdansim tig00014769_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75658

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54--100
3
16.0
3
95
4
87
34
0
0
65
0.93
1404--1490
11
7.5
11
71
13
59
26
3
4
65
1.28
4908--4938
16
1.9
16
93
0
53
25
12
6
54
1.62
4900--4960
22
2.8
21
77
18
70
22
11
6
59
1.55
11802--11878
22
3.5
22
80
3
93
33
15
14
36
1.88
12543--13450
46
20.0
46
91
2
1455
22
22
19
36
1.95
12543--13450
91
10.0
92
91
2
1455
22
22
19
36
1.95
12543--13450
181
5.0
181
93
1
1457
22
22
19
36
1.95
13675--13710
3
12.0
3
100
0
72
33
0
0
66
0.92
15065--15118
14
4.0
13
77
17
56
24
1
3
70
1.13
15444--15488
2
23.5
2
82
8
58
51
2
0
46
1.13
17256--17308
12
4.6
12
79
9
56
20
16
16
45
1.86
18362--18426
6
10.2
6
72
18
51
76
4
3
15
1.07
18357--18418
26
2.2
29
80
8
76
75
4
3
16
1.10
25592--25795
55
3.7
55
85
3
218
29
25
16
28
1.97
26994--27059
23
2.7
23
86
11
78
4
16
3
75
1.09
27007--27054
12
3.3
15
75
24
50
6
18
4
70
1.25
26994--27060
26
2.4
28
82
12
84
4
16
2
76
1.08
27022--27105
38
2.3
37
81
6
91
8
10
2
78
1.05
27054--27138
9
9.6
9
70
19
54
9
8
0
82
0.85
27066--27138
16
4.4
17
81
8
69
9
9
0
80
0.90
27077--27138
17
3.7
17
85
8
74
8
8
0
83
0.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27077--27142
24
2.8
23
78
19
57
9
7
0
83
0.82
26989--27148
34
4.4
36
72
16
107
8
11
1
78
1.01
26998--27148
59
2.6
58
75
17
141
7
11
1
78
1.01
36785--36913
45
2.8
45
86
1
177
37
21
11
28
1.89
39596--39626
2
15.5
2
100
0
62
51
0
0
48
1.00
42651--42734
40
2.1
40
100
0
168
50
9
11
28
1.70
48246--48290
20
2.3
20
84
3
56
48
8
4
37
1.55
48249--48288
20
2.0
20
90
0
62
45
10
5
40
1.60
48302--48341
20
2.0
21
90
5
64
45
15
5
35
1.68
48355--48393
20
2.0
20
94
0
69
41
17
5
35
1.72
48247--48394
52
2.8
52
94
3
262
47
12
5
33
1.65
52963--53007
20
2.3
20
84
3
56
48
8
4
37
1.55
52966--53005
20
2.0
20
90
0
62
45
10
5
40
1.60
53019--53058
20
2.0
21
90
5
64
45
15
5
35
1.68
53072--53110
20
2.0
20
94
0
69
41
17
5
35
1.72
52964--53111
52
2.8
52
94
3
262
47
12
5
33
1.65
55283--55321
13
3.1
13
77
7
53
10
12
0
76
1.01
56642--56726
36
2.3
35
78
9
89
54
2
2
41
1.26
56846--56888
20
2.3
19
80
11
52
25
27
6
39
1.81
62205--62399
28
6.8
28
82
3
210
33
2
14
50
1.54
62205--62399
86
2.3
84
83
3
228
33
2
14
50
1.54
62206--62414
58
3.6
56
81
5
213
33
2
15
48
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62753--62791
20
1.9
20
84
5
51
23
0
12
64
1.28
63353--63687
117
2.9
116
86
3
451
21
15
31
32
1.94
70466--70544
32
2.5
32
82
0
104
27
17
22
31
1.97
73258--73711
112
4.1
112
84
4
595
45
13
14
27
1.81
73258--73711
223
2.1
218
86
4
628
45
13
14
27
1.81
73582--74036
180
2.5
182
91
2
727
43
14
15
26
1.85

Tables:   1

The End!