Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006204.1 Hibiscus syriacus cultivar Beakdansim tig00014770_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  153925

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1954--1996
3
15.0
3
81
18
56
65
0
2
32
1.06
2013--2064
21
2.4
22
80
3
70
80
1
7
9
0.97
2035--2084
24
2.0
24
85
11
66
76
0
10
14
1.03
3530--3605
31
2.4
31
84
2
98
48
2
1
47
1.24
3552--3703
33
4.4
36
76
12
133
42
6
3
46
1.48
3544--3704
36
4.7
36
73
15
94
44
6
3
45
1.46
11321--11356
13
2.5
15
91
8
58
80
0
0
19
0.71
13952--14034
28
2.9
29
75
10
89
48
4
15
31
1.66
17114--17155
20
2.2
19
87
12
59
42
0
4
52
1.22
38692--38749
29
2.0
30
96
3
109
34
3
18
43
1.68
38836--38885
15
3.4
15
75
10
50
40
2
0
58
1.10
39605--39672
31
2.2
31
100
0
136
11
36
14
36
1.83
48073--48260
87
2.2
86
84
4
236
23
15
19
41
1.89
62063--62120
29
2.0
28
83
3
71
56
1
5
36
1.32
63198--63222
2
12.5
2
100
0
50
48
0
0
52
1.00
64222--64346
31
4.0
31
94
2
207
37
23
19
20
1.94
66681--66763
39
2.2
38
78
12
89
46
4
3
44
1.42
73561--73595
18
2.0
18
88
5
54
17
14
17
51
1.77
75947--75976
9
3.3
9
95
0
51
40
33
26
0
1.57
78796--78825
4
7.5
4
100
0
60
23
0
0
76
0.78
91689--91717
6
4.8
6
100
0
58
34
31
0
34
1.58
92100--92125
6
4.3
6
100
0
52
0
30
15
53
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93575--93648
31
2.4
31
97
0
139
25
5
20
48
1.70
96264--96292
2
14.5
2
100
0
58
51
0
0
48
1.00
96524--96587
21
3.4
20
66
29
59
32
3
18
45
1.65
96517--96634
35
3.3
35
88
5
166
33
3
18
44
1.67
101136--101196
21
3.2
21
65
29
64
31
4
21
42
1.74
101128--101246
35
3.3
37
88
8
174
31
5
19
43
1.72
114015--114039
2
12.5
2
100
0
50
52
0
0
48
1.00
119367--119467
21
4.8
21
70
15
75
20
21
22
34
1.97
119373--119467
42
2.3
42
96
0
172
21
21
23
34
1.97
119560--119586
6
4.5
6
100
0
54
33
51
14
0
1.43
119692--119754
6
10.5
6
94
0
81
6
9
49
34
1.61
119696--119761
6
11.0
6
93
0
69
10
7
46
34
1.67
119939--119993
23
2.4
23
81
6
67
34
3
3
58
1.33
131381--131455
23
3.5
21
76
15
64
24
22
26
26
2.00
137227--137275
19
2.6
19
100
0
98
20
22
42
14
1.88
140663--140702
21
1.9
21
85
10
55
35
10
2
52
1.48
140846--140882
15
2.5
15
100
0
74
18
21
10
48
1.78
146261--146322
23
2.8
21
87
4
79
14
16
16
53
1.74
148057--148097
20
2.0
20
100
0
82
29
34
9
26
1.88
149621--149655
13
2.6
14
95
4
63
20
17
14
48
1.81
150375--150434
22
2.7
23
92
7
106
46
0
3
50
1.18
152642--152675
2
17.5
2
93
6
61
50
0
0
50
1.00

Tables:   1

The End!