Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006205.1 Hibiscus syriacus cultivar Beakdansim tig00014771_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110050

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1450--1537
12
7.3
12
67
14
56
22
18
22
36
1.95
1434--1545
24
4.7
24
95
0
188
22
18
22
36
1.95
7742--7783
7
6.1
7
80
5
50
42
0
0
57
0.99
7737--7776
20
2.0
20
85
0
53
37
0
2
60
1.11
8943--8982
2
20.0
2
100
0
80
50
0
0
50
1.00
9073--9157
2
42.5
2
90
4
136
48
2
1
48
1.22
9400--9499
4
25.0
4
72
10
55
20
9
3
68
1.31
9391--9481
47
1.9
46
82
8
112
16
9
3
70
1.28
10478--10515
10
3.8
10
83
13
51
21
0
0
78
0.74
20110--20880
105
7.4
105
91
2
1185
33
26
18
22
1.97
20110--20822
310
2.3
312
93
1
1198
33
26
18
21
1.96
22500--22550
19
2.7
20
79
11
63
23
1
5
68
1.22
22568--22672
2
53.0
2
96
1
194
48
0
0
50
1.07
22916--23016
4
25.0
4
72
14
57
18
7
2
70
1.25
28210--28243
16
2.1
16
94
0
59
32
26
8
32
1.87
30611--31500
445
2.0
445
98
0
1735
33
16
16
32
1.92
37990--38034
3
15.0
3
100
0
90
33
0
0
66
0.92
38474--38537
31
2.1
31
96
0
119
34
4
15
45
1.67
43011--43150
60
2.3
60
84
3
176
45
2
18
33
1.64
43604--43636
15
2.2
15
89
10
50
42
3
9
45
1.51
47565--47683
38
3.1
38
100
0
238
50
10
10
28
1.70
55706--55766
3
20.3
3
100
0
122
32
0
0
67
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57934--58012
16
4.7
17
77
17
85
62
0
0
37
0.96
57932--57996
32
2.0
32
100
0
130
58
0
0
41
0.98
57945--58008
9
6.6
9
80
16
74
64
0
0
35
0.94
58477--58525
21
2.3
21
82
6
64
69
0
0
30
0.89
58486--58534
25
2.0
25
88
4
73
67
2
0
30
1.02
62939--62988
20
2.5
20
90
0
73
26
28
16
30
1.96
63106--63140
14
2.3
15
90
9
54
45
0
0
54
0.99
67235--67259
3
8.3
3
100
0
50
64
0
36
0
0.94
72615--72683
23
2.9
23
79
14
68
49
23
7
20
1.73
88062--88105
23
1.9
24
82
17
58
47
4
11
36
1.60
90547--90621
28
2.8
27
80
9
73
25
0
20
54
1.44
93577--93607
3
10.3
3
100
0
62
67
0
0
32
0.91
95358--95404
23
2.0
23
95
0
85
40
10
17
31
1.83
95361--95415
23
2.4
23
87
0
83
41
12
12
32
1.81
95553--95619
2
33.5
2
100
0
134
50
0
0
49
1.00
95946--95975
10
2.8
11
90
10
53
80
0
0
20
0.72
97441--97491
3
17.7
3
88
8
79
62
0
0
37
0.95
97858--98199
136
2.6
134
87
5
480
27
22
16
33
1.95
98550--98774
61
3.7
60
89
4
335
39
14
16
30
1.88
98750--98830
27
2.9
28
81
7
110
38
14
14
32
1.87
98890--98964
36
2.1
37
87
7
109
38
16
22
22
1.92
98968--99109
39
3.9
36
88
4
178
40
14
18
26
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
98908--99024
60
2.0
60
88
6
175
39
15
18
26
1.91
99039--99581
40
13.8
39
90
4
576
40
12
16
29
1.86
99101--99581
40
12.2
40
92
2
751
41
12
16
29
1.85
102431--102507
23
3.4
23
84
7
104
0
16
1
81
0.75
102429--102510
8
9.8
8
80
15
94
0
15
1
82
0.72
104898--104965
26
2.5
26
73
4
64
57
10
14
17
1.65
105968--106003
14
2.6
14
95
0
63
44
11
25
19
1.83

Tables:   1

The End!