Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006206.1 Hibiscus syriacus cultivar Beakdansim tig00014773_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 480835
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
File 3 of 3
Found at i:420108 original size:12 final size:13
Alignment explanation
Indices: 420073--420107 Score: 63
Period size: 12 Copynumber: 2.8 Consensus size: 13
420063 AGGGGGAGTA
420073 ATTTTCAAAAATG
1 ATTTTCAAAAATG
420086 A-TTTCAAAAATG
1 ATTTTCAAAAATG
420098 ATTTTCAAAA
1 ATTTTCAAAA
420108 TAAGGGGGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 12 0.57
13 9 0.43
ACGTcount: A:0.49, C:0.09, G:0.06, T:0.37
Consensus pattern (13 bp):
ATTTTCAAAAATG
Found at i:422987 original size:160 final size:162
Alignment explanation
Indices: 422811--423144 Score: 474
Period size: 161 Copynumber: 2.1 Consensus size: 162
422801 TGAAACCGAT
* * *
422811 TTTGTCATATTTTTACCTGTTATATTATTATGTATCAATACATATTTATAAAGTACCGATACTTT
1 TTTGTCATAATTTTACCTATTATATTATTATGTATCAATACATACTTATAAAGTACCGATACTTT
** *
422876 ATAGGCGCTATTATTT-TTTTCTTTTAAATTCCAAAAGTATCGATACTTATTTTAATAGAATCGA
66 ATAGGCGCTATTATTTCTTTTCTTTTAAATTCCAAAAGTATCGATACTTATTGGAATAAAATCGA
* *
422940 TACATTCAACATATCGGGTAGCGATTTACCGG
131 TACATTCAACATATCCGATAGCGATTTACCGG
* * * *
422972 -TTGTCATAATTTTACCTATTATATTTTTATTTATCAATACATGCTTATAAAGTATCGATACTTT
1 TTTGTCATAATTTTACCTATTATATTATTATGTATCAATACATACTTATAAAGTACCGATACTTT
* *** * *
423036 ATTGGTTTTATTTTTTCTTTTCTTTTAAATTCCAAAAGTATCGATATTTATTGGAATAAAATCGA
66 ATAGGCGCTATTATTTCTTTTCTTTTAAATTCCAAAAGTATCGATACTTATTGGAATAAAATCGA
*
423101 TACATTCAACATATCCGATAGCGATTTAGCGG
131 TACATTCAACATATCCGATAGCGATTTACCGG
423133 TTTTGTCATAAT
1 -TTTGTCATAAT
423145 GAAACCGGTT
Statistics
Matches: 151, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
160 68 0.45
161 73 0.48
163 10 0.07
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.45
Consensus pattern (162 bp):
TTTGTCATAATTTTACCTATTATATTATTATGTATCAATACATACTTATAAAGTACCGATACTTT
ATAGGCGCTATTATTTCTTTTCTTTTAAATTCCAAAAGTATCGATACTTATTGGAATAAAATCGA
TACATTCAACATATCCGATAGCGATTTACCGG
Found at i:423284 original size:183 final size:183
Alignment explanation
Indices: 422972--423372 Score: 588
Period size: 183 Copynumber: 2.2 Consensus size: 183
422962 GATTTACCGG
* * * * *
422972 TTGTCATAATTTTACCTATTATATTTTTATTTATCAATACATGCTTATAAAGTATCGATACTTTA
1 TTGTCATAATTTTACCTGTTATATTGTTATGTATTAATACATGCTTATAAAGTATAGATACTTTA
* ** *
423037 TTGGTTTTATTTTTTCTTTTCTTTTAAATTCCAAAAGTATCGATATTTATTGGAATAAAATCGAT
66 TAGGTGCTATTATTTCTTTTCTTTTAAATTCCAAAAGTATCGATATTTATTGGAATAAAATCGAT
* * **
423102 ACATTCAACATATCCGATAGCGATTTAGCGGTTTTGTCATAATGAAACCGGTT
131 ACATTCAACATAACCGATAGCGATTTACCGGTTTTGTCATAATGAAACCCATT
* * * *
423155 TTGTCATAATTTTATCTGTTATATTGTTATGTATTGATATATGTTTATAAAGTATAGATACTTTA
1 TTGTCATAATTTTACCTGTTATATTGTTATGTATTAATACATGCTTATAAAGTATAGATACTTTA
* *
423220 TAGGTGCTATTATTTCTTTTCTTTTAAATTCCAAAAGTATCGATATTTATTTGAATAGAATCGAT
66 TAGGTGCTATTATTTCTTTTCTTTTAAATTCCAAAAGTATCGATATTTATTGGAATAAAATCGAT
* *
423285 ACATTCAACATAACCGGTAGCGCTTTACCGGTTTTGTCATAATGAAACCCATT
131 ACATTCAACATAACCGATAGCGATTTACCGGTTTTGTCATAATGAAACCCATT
* *
423338 TTGTCATATTTTTACCTG-TATATTGTTACGTATTA
1 TTGTCATAATTTTACCTGTTATATTGTTATGTATTA
423373 TTGAGTTAAT
Statistics
Matches: 193, Mismatches: 25, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
182 15 0.08
183 178 0.92
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.45
Consensus pattern (183 bp):
TTGTCATAATTTTACCTGTTATATTGTTATGTATTAATACATGCTTATAAAGTATAGATACTTTA
TAGGTGCTATTATTTCTTTTCTTTTAAATTCCAAAAGTATCGATATTTATTGGAATAAAATCGAT
ACATTCAACATAACCGATAGCGATTTACCGGTTTTGTCATAATGAAACCCATT
Found at i:427703 original size:21 final size:19
Alignment explanation
Indices: 427679--427728 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 19
427669 TTACATAAAT
427679 TATCGATACATTTTGTATATG
1 TATCGATAC-TTTTGT-TATG
427700 TATCGATAC--TT-TTATG
1 TATCGATACTTTTGTTATG
427716 TATCGATACTTTT
1 TATCGATACTTTT
427729 TGTCTAGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
16 13 0.48
17 1 0.04
18 4 0.15
21 9 0.33
ACGTcount: A:0.26, C:0.12, G:0.12, T:0.50
Consensus pattern (19 bp):
TATCGATACTTTTGTTATG
Found at i:427717 original size:16 final size:16
Alignment explanation
Indices: 427696--427728 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
427686 ACATTTTGTA
427696 TATGTATCGATACTTT
1 TATGTATCGATACTTT
427712 TATGTATCGATACTTT
1 TATGTATCGATACTTT
427728 T
1 T
427729 TGTCTAGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.52
Consensus pattern (16 bp):
TATGTATCGATACTTT
Found at i:428167 original size:20 final size:20
Alignment explanation
Indices: 428142--428196 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
428132 TTTATATAAA
428142 GTATCGATACTTTTTTATAT
1 GTATCGATACTTTTTTATAT
428162 GTATCGATACTTTTTTATAT
1 GTATCGATACTTTTTTATAT
*
428182 GTAGCGATACTTTTT
1 GTATCGATACTTTTT
428197 GTCCAGTATG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.24, C:0.11, G:0.13, T:0.53
Consensus pattern (20 bp):
GTATCGATACTTTTTTATAT
Found at i:428490 original size:181 final size:181
Alignment explanation
Indices: 428186--428519 Score: 546
Period size: 181 Copynumber: 1.8 Consensus size: 181
428176 TTATATGTAG
428186 CGATACTTTTTGTCCAGTATGCTTCTCAAAACTACATGCACGTAAGAAATATCGATACCAATAAA
1 CGATACTTTTTGTCCAGTATGCTTCTCAAAACTACATGCACGTAAGAAATATCGATACCAATAAA
*
428251 AATGTATCGATACATAATGATATAAAAGGTTAAAAATTGAAAAAACTGGTTTCAATATACAATGT
66 AATGTATCGATACATAATGATATAAAAGGTTAAAAATTGAAAAAACTGGTTTCAATATACAATAT
*
428316 AACCGATCAATAGATACCAGTTTAATGGTAACATAAGTTTATATAAAGTAT
131 AACAGATCAATAGATACCAGTTTAATGGTAACATAAGTTTATATAAAGTAT
* * *
428367 CGATACTTTTTGTCTAGTATGCTTCTCAAAACTACATGCACGTAAGAAGTATCTG-TACCTATAA
1 CGATACTTTTTGTCCAGTATGCTTCTCAAAACTACATGCACGTAAGAAATATC-GATACCAATAA
**
428431 AAATGTATCGATACATAATGATATAAAAGGTTAAAAATTGTTAAAA-TCGGTTTCAATATACAAT
65 AAATGTATCGATACATAATGATATAAAAGGTTAAAAATTGAAAAAACT-GGTTTCAATATACAAT
* * *
428495 ATAACATATTAATAGATACCGGTTT
129 ATAACAGATCAATAGATACCAGTTT
428520 TGAAAAAACA
Statistics
Matches: 141, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
180 1 0.01
181 139 0.99
182 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.32
Consensus pattern (181 bp):
CGATACTTTTTGTCCAGTATGCTTCTCAAAACTACATGCACGTAAGAAATATCGATACCAATAAA
AATGTATCGATACATAATGATATAAAAGGTTAAAAATTGAAAAAACTGGTTTCAATATACAATAT
AACAGATCAATAGATACCAGTTTAATGGTAACATAAGTTTATATAAAGTAT
Found at i:431869 original size:14 final size:14
Alignment explanation
Indices: 431846--431875 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
431836 GAACTCAACT
*
431846 TTTCCTGATTACCA
1 TTTCCAGATTACCA
431860 TTTCCAGATTACCA
1 TTTCCAGATTACCA
431874 TT
1 TT
431876 CGTCGGTTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.27, G:0.07, T:0.43
Consensus pattern (14 bp):
TTTCCAGATTACCA
Found at i:433032 original size:34 final size:34
Alignment explanation
Indices: 432989--433071 Score: 159
Period size: 34 Copynumber: 2.5 Consensus size: 34
432979 TTTCGCAAAA
432989 ATTAATATTTCGTATTGTCAATTTGTTCTCATCG
1 ATTAATATTTCGTATTGTCAATTTGTTCTCATCG
433023 ATTAATATTTCGTATTGTCAATTTGTTCTCATCG
1 ATTAATATTTCGTATTGTCAATTTGTTCTCATCG
433057 ATTAATATTTC-TATT
1 ATTAATATTTCGTATT
433072 ATATGATTTT
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
33 4 0.08
34 45 0.92
ACGTcount: A:0.25, C:0.13, G:0.10, T:0.52
Consensus pattern (34 bp):
ATTAATATTTCGTATTGTCAATTTGTTCTCATCG
Found at i:433331 original size:36 final size:36
Alignment explanation
Indices: 433278--433399 Score: 219
Period size: 36 Copynumber: 3.4 Consensus size: 36
433268 AATTACATCC
433278 ACTTTAGC-TTAGGTAAAAGCTTAAACGTAATATGA
1 ACTTTAGCTTTAGGTAAAAGCTTAAACGTAATATGA
*
433313 ACTTTAGCTTTAGGTAAAAGCTTAAACATAATATGA
1 ACTTTAGCTTTAGGTAAAAGCTTAAACGTAATATGA
*
433349 ACTTTAGCTTTAGGTAAAAGCTAAAACGTAATATGA
1 ACTTTAGCTTTAGGTAAAAGCTTAAACGTAATATGA
433385 ACTTTAGCTTTAGGT
1 ACTTTAGCTTTAGGT
433400 TAACTAAATT
Statistics
Matches: 83, Mismatches: 3, Indels: 1
0.95 0.03 0.01
Matches are distributed among these distances:
35 8 0.10
36 75 0.90
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (36 bp):
ACTTTAGCTTTAGGTAAAAGCTTAAACGTAATATGA
Found at i:437286 original size:15 final size:15
Alignment explanation
Indices: 437268--437296 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
437258 TTCATTTCAA
437268 AATTTTATAAAATAC
1 AATTTTATAAAATAC
437283 AATTTTATAAAATA
1 AATTTTATAAAATA
437297 ACATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (15 bp):
AATTTTATAAAATAC
Found at i:437455 original size:14 final size:14
Alignment explanation
Indices: 437436--437499 Score: 56
Period size: 14 Copynumber: 4.1 Consensus size: 14
437426 CAAACAGCGT
437436 AATTGGTTTTCTGG
1 AATTGGTTTTCTGG
*
437450 AATTGGTTTTCCAGAAATGT
1 AATTGGTTTT-C-----TGG
437470 AATTGGTTTTCTGG
1 AATTGGTTTTCTGG
*
437484 AATTGGTTTTCCGG
1 AATTGGTTTTCTGG
437498 AA
1 AA
437500 AACCAATTAC
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
14 27 0.66
15 1 0.02
19 1 0.02
20 12 0.29
ACGTcount: A:0.22, C:0.09, G:0.25, T:0.44
Consensus pattern (14 bp):
AATTGGTTTTCTGG
Found at i:437477 original size:34 final size:34
Alignment explanation
Indices: 437434--437500 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
437424 TCCAAACAGC
437434 GTAATTGGTTTTCTGGAATTGGTTTTCCAGAAAT
1 GTAATTGGTTTTCTGGAATTGGTTTTCCAGAAAT
*
437468 GTAATTGGTTTTCTGGAATTGGTTTTCCGGAAA
1 GTAATTGGTTTTCTGGAATTGGTTTTCCAGAAA
437501 ACCAATTACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.22, C:0.09, G:0.25, T:0.43
Consensus pattern (34 bp):
GTAATTGGTTTTCTGGAATTGGTTTTCCAGAAAT
Found at i:438672 original size:40 final size:40
Alignment explanation
Indices: 438596--438672 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 40
438586 TGAATGGTTT
* * * * *
438596 TAAAGACGCCTAGAGATCCATTTTGCATTTTGAAATCTGC
1 TAAAGACGCCTAGAAATCCATATTGAACTGTGAAATCTGC
438636 TAAAGACGCCTAGAAATCCATATT-AACTGTGTAAATC
1 TAAAGACGCCTAGAAATCCATATTGAACTGTG-AAATC
438673 ACCCCATTTG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
39 4 0.13
40 27 0.87
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (40 bp):
TAAAGACGCCTAGAAATCCATATTGAACTGTGAAATCTGC
Found at i:440698 original size:36 final size:35
Alignment explanation
Indices: 440591--441015 Score: 572
Period size: 35 Copynumber: 11.9 Consensus size: 35
440581 CAACATCCTA
* *
440591 AAAAACCATATATTATACGTTTTCAAAAC-ATTTCG
1 AAAAACTATATATTATACGTTTTCAAAACTATTT-T
*
440626 AAAAA-TATAT-TATATATGTTTTCAAAACTATTTTTT
1 AAAAACTATATAT-TATACGTTTTCAAAACTA--TTTT
440662 AAAAAACTATATATTATACGTTTTTC-AAACTATTTT
1 -AAAAACTATATATTATACG-TTTTCAAAACTATTTT
*
440698 AAAAACTATATATTATGCGTTTTTCAAAACTATTTT
1 AAAAACTATATATTATACG-TTTTCAAAACTATTTT
* * * *
440734 TAAAACTATATATTATATGTTTTCCAAATTATTTT
1 AAAAACTATATATTATACGTTTTCAAAACTATTTT
*
440769 AAAAAATATATATTATACGTTTTCAAAACTATTTTT
1 AAAAACTATATATTATACGTTTTCAAAACTA-TTTT
*
440805 AAAAACTATATATTATATACGTTTGCAAAACTATTTT
1 AAAAACTATATA-T-TATACGTTTTCAAAACTATTTT
*
440842 AAAAAACTATATATTCTACGTTTTCAAAACTATTTT
1 -AAAAACTATATATTATACGTTTTCAAAACTATTTT
* * *
440878 AAAAATTATATATTATACATTTTCAAAATTATTTT
1 AAAAACTATATATTATACGTTTTCAAAACTATTTT
440913 AAAAACTATATATTATACGTTTTCAAAACTATTTT
1 AAAAACTATATATTATACGTTTTCAAAACTATTTT
440948 AAAAAAACTATATATTA-ACGTTTTCAAAACTATTTT
1 --AAAAACTATATATTATACGTTTTCAAAACTATTTT
440984 AAAAACTATATATTATACGTTTTCAAAACTAT
1 AAAAACTATATATTATACGTTTTCAAAACTAT
441016 ATATTATACG
Statistics
Matches: 348, Mismatches: 26, Indels: 32
0.86 0.06 0.08
Matches are distributed among these distances:
33 1 0.00
34 34 0.10
35 149 0.43
36 84 0.24
37 29 0.08
38 45 0.13
39 6 0.02
ACGTcount: A:0.43, C:0.11, G:0.03, T:0.43
Consensus pattern (35 bp):
AAAAACTATATATTATACGTTTTCAAAACTATTTT
Found at i:440767 original size:71 final size:70
Alignment explanation
Indices: 440592--441015 Score: 561
Period size: 71 Copynumber: 5.9 Consensus size: 70
440582 AACATCCTAA
* * *
440592 AAAACCATATATTATACGTTTTCAAAAC-ATTTCGAAAAA-TATAT-TATATATGTTTTCAAAAC
1 AAAACTATATATTATACGTTTTCAAAACTATTT-TAAAAACTATATAT-TATACGTTTTCAAAAC
440654 TATTTTTT
64 TA-TTTTT
*
440662 AAAAAACTATATATTATACGTTTTTC-AAACTATTTTAAAAACTATATATTATGCGTTTTTCAAA
1 --AAAACTATATATTATACG-TTTTCAAAACTATTTTAAAAACTATATATTATACG-TTTTCAAA
440726 ACTATTTTT
62 ACTATTTTT
* * * *
440735 AAAACTATATATTATATGTTTTCCAAATTATTTTAAAAAATATATATTATACGTTTTCAAAACTA
1 AAAACTATATATTATACGTTTTCAAAACTATTTTAAAAACTATATATTATACGTTTTCAAAACTA
440800 TTTTT
66 TTTTT
* *
440805 AAAAACTATATATTATATACGTTTGCAAAACTATTTTAAAAAACTATATATTCTACGTTTTCAAA
1 -AAAACTATATA-T-TATACGTTTTCAAAACTATTTT-AAAAACTATATATTATACGTTTTCAAA
*
440870 ACTATTTTA
62 ACTATTTTT
* * *
440879 AAAATTATATATTATACATTTTCAAAATTATTTTAAAAACTATATATTATACGTTTTCAAAACTA
1 AAAACTATATATTATACGTTTTCAAAACTATTTTAAAAACTATATATTATACGTTTTCAAAACTA
*
440944 TTTTAAA
66 TTTT--T
440951 AAAACTATATATTA-ACGTTTTCAAAACTATTTTAAAAACTATATATTATACGTTTTCAAAACTA
1 AAAACTATATATTATACGTTTTCAAAACTATTTTAAAAACTATATATTATACGTTTTCAAAACTA
441015 T
66 T
441016 ATATTATACG
Statistics
Matches: 317, Mismatches: 23, Indels: 25
0.87 0.06 0.07
Matches are distributed among these distances:
70 56 0.18
71 122 0.38
72 42 0.13
73 51 0.16
74 46 0.15
ACGTcount: A:0.43, C:0.11, G:0.03, T:0.43
Consensus pattern (70 bp):
AAAACTATATATTATACGTTTTCAAAACTATTTTAAAAACTATATATTATACGTTTTCAAAACTA
TTTTT
Found at i:440836 original size:144 final size:141
Alignment explanation
Indices: 440591--441015 Score: 597
Period size: 144 Copynumber: 3.0 Consensus size: 141
440581 CAACATCCTA
* ** ** *
440591 AAAAACCATATATTATACGTTTT-CAAAACATTTCGAAAAATATAT-TATATATGTTTTCAAAAC
1 AAAAACTATATATTATACGTTTTCCAAATTATTTTAAAAAATATATAT-TATACGTTTTCAAAAC
*
440654 TATTTTTTAAAAAACTATATATTATACGTTTTTC-AAACTATTTTAAAAACTATATATTATGCGT
65 TA-TTTTT-AAAAACTATATATTATACG-TTTTCAAAACTATTTTAAAAACTATATATTATACG-
440718 TTTTCAAAACTATTTT
126 TTTTCAAAACTATTTT
* *
440734 TAAAACTATATATTATATGTTTTCCAAATTATTTTAAAAAATATATATTATACGTTTTCAAAACT
1 AAAAACTATATATTATACGTTTTCCAAATTATTTTAAAAAATATATATTATACGTTTTCAAAACT
* *
440799 ATTTTTAAAAACTATATATTATATACGTTTGCAAAACTATTTTAAAAAACTATATATTCTACGTT
66 ATTTTTAAAAACTATATA-T-TATACGTTTTCAAAACTATTTT-AAAAACTATATATTATACGTT
440864 TTCAAAACTATTTT
128 TTCAAAACTATTTT
* * * *
440878 AAAAATTATATATTATACATTTTCAAAATTATTTTAAAAACTATATATTATACGTTTTCAAAACT
1 AAAAACTATATATTATACGTTTTCCAAATTATTTTAAAAAATATATATTATACGTTTTCAAAACT
*
440943 ATTTTAAAAAAACTATATATTA-ACGTTTTCAAAACTATTTTAAAAACTATATATTATACGTTTT
66 ATTTT-TAAAAACTATATATTATACGTTTTCAAAACTATTTTAAAAACTATATATTATACGTTTT
441007 CAAAACTAT
130 CAAAACTAT
441016 ATATTATACG
Statistics
Matches: 255, Mismatches: 20, Indels: 16
0.88 0.07 0.05
Matches are distributed among these distances:
141 31 0.12
142 30 0.12
143 32 0.13
144 132 0.52
145 30 0.12
ACGTcount: A:0.43, C:0.11, G:0.03, T:0.43
Consensus pattern (141 bp):
AAAAACTATATATTATACGTTTTCCAAATTATTTTAAAAAATATATATTATACGTTTTCAAAACT
ATTTTTAAAAACTATATATTATACGTTTTCAAAACTATTTTAAAAACTATATATTATACGTTTTC
AAAACTATTTT
Found at i:441036 original size:25 final size:23
Alignment explanation
Indices: 440980--441028 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
440970 TTCAAAACTA
440980 TTTTAAAAACTATATATTATACG
1 TTTTAAAAACTATATATTATACG
*
441003 TTTTCAAAACTATATATTATACG
1 TTTTAAAAACTATATATTATACG
441026 TTT
1 TTT
441029 CTTAAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.39, C:0.10, G:0.04, T:0.47
Consensus pattern (23 bp):
TTTTAAAAACTATATATTATACG
Found at i:442684 original size:14 final size:14
Alignment explanation
Indices: 442665--442697 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
442655 CGCAGGGCAT
442665 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
442679 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
*
442693 ACGAG
1 CCGAG
442698 CTATGAGAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.39, G:0.30, T:0.06
Consensus pattern (14 bp):
CCGAGGCCATCCGA
Found at i:442731 original size:33 final size:33
Alignment explanation
Indices: 442679--442762 Score: 123
Period size: 33 Copynumber: 2.5 Consensus size: 33
442669 GGCCATCCGA
* * * *
442679 CCGAGGCCATCCGAACGAGCTATGAGAGGGCAT
1 CCGAGGGCAACCGAGCGAGCTATGAGAGGGAAT
*
442712 CCGAGGGCAACCGAGCGAGCTATGCGAGGGAAT
1 CCGAGGGCAACCGAGCGAGCTATGAGAGGGAAT
442745 CCGAGGGCAACCGAGCGA
1 CCGAGGGCAACCGAGCGA
442763 TGGTAGATCG
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.27, C:0.27, G:0.37, T:0.08
Consensus pattern (33 bp):
CCGAGGGCAACCGAGCGAGCTATGAGAGGGAAT
Found at i:442832 original size:30 final size:30
Alignment explanation
Indices: 442765--442833 Score: 104
Period size: 29 Copynumber: 2.3 Consensus size: 30
442755 CCGAGCGATG
*
442765 GTAGATCGCCCGGAGTACATGGCGACCTAC
1 GTAGGTCGCCCGGAGTACATGGCGACCTAC
* *
442795 -AAGGTCGCCCGGAGTGCATGGCGACCTAC
1 GTAGGTCGCCCGGAGTACATGGCGACCTAC
442824 GTAGGTCGCC
1 GTAGGTCGCC
442834 ATGCACTCCG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 26 0.76
30 8 0.24
ACGTcount: A:0.20, C:0.30, G:0.33, T:0.16
Consensus pattern (30 bp):
GTAGGTCGCCCGGAGTACATGGCGACCTAC
Found at i:442912 original size:33 final size:32
Alignment explanation
Indices: 442855--442937 Score: 114
Period size: 33 Copynumber: 2.6 Consensus size: 32
442845 GCGACCTACC
*
442855 CTCGCTCGGTTG-CTCGGATTCCCTCGCATAG
1 CTCGCTCGGTTGCCTCGGATGCCCTCGCATAG
442886 CTCGCTCGGTTGCCCTCGGATGCCCTCGCATAG
1 CTCGCTCGGTTG-CCTCGGATGCCCTCGCATAG
* *
442919 CTCGTTCGGATGGCCTCGG
1 CTCGCTCGG-TTGCCTCGG
442938 TCGGATGGCA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
31 12 0.26
33 32 0.70
34 2 0.04
ACGTcount: A:0.08, C:0.36, G:0.29, T:0.27
Consensus pattern (32 bp):
CTCGCTCGGTTGCCTCGGATGCCCTCGCATAG
Found at i:442963 original size:20 final size:20
Alignment explanation
Indices: 442938--442991 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
442928 ATGGCCTCGG
*
442938 TCGGATGGCATCGGATGCTC
1 TCGGATGGCCTCGGATGCTC
*
442958 TCGGATGGCCTCGGATGCTT
1 TCGGATGGCCTCGGATGCTC
*
442978 TCGAATGGCCTCGG
1 TCGGATGGCCTCGG
442992 TCGGATGCCC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.13, C:0.26, G:0.35, T:0.26
Consensus pattern (20 bp):
TCGGATGGCCTCGGATGCTC
Found at i:443539 original size:2 final size:2
Alignment explanation
Indices: 443534--443566 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
443524 ATATGCGTAT
*
443534 TA TA TA TA TA TA TA TA TA AA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
443567 GTAATATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:444593 original size:186 final size:187
Alignment explanation
Indices: 444279--444652 Score: 678
Period size: 186 Copynumber: 2.0 Consensus size: 187
444269 AAATGCTACT
444279 TACAAACTAAAGAATGGAGAACAATGCACAAGATTAAAAGCAAACAACAAAATGTACAAGGTTGA
1 TACAAACTAAAGAATGGAGAACAATGCACAAGATTAAAAGCAAACAACAAAATGTACAAGGTTGA
* *
444344 CACTCTTCAGGATAACAACCATAACTAGTTTACTTGAACTTCATTTGTTTTCATGTCTCCAC-AT
66 CACTCTTCAGGATAACAACCATAACTAGTTTACTTGAACTTCATTTATTTTCAAGTCTCCACAAT
*
444408 GCAATATTAAACCCCATACACACAACAGGAAATAACTTGCTAAGTTGAAAGTTAACA
131 GCAATATTAAACCCCATACACACAACAGGAAATAACTTGCTAAGTTAAAAGTTAACA
*
444465 TACAAACTAAAGAATGTAGAACAATGCACAAGATTAAAAGCAAACAACAAAATGTACAAGGTTGA
1 TACAAACTAAAGAATGGAGAACAATGCACAAGATTAAAAGCAAACAACAAAATGTACAAGGTTGA
444530 CACTCTTCAGGATAACAACCATAACTAGTTTACTTGAACTTCATTTATTTTCAAGTCTCCACATA
66 CACTCTTCAGGATAACAACCATAACTAGTTTACTTGAACTTCATTTATTTTCAAGTCTCCACA-A
* *
444595 TGCAATATTAAACTCCATACACACAACGGGAAATAACTTGCTAAGTTAAAAGTTAACA
130 TGCAATATTAAACCCCATACACACAACAGGAAATAACTTGCTAAGTTAAAAGTTAACA
444653 AACCAGCATG
Statistics
Matches: 180, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
186 124 0.69
188 56 0.31
ACGTcount: A:0.43, C:0.20, G:0.12, T:0.25
Consensus pattern (187 bp):
TACAAACTAAAGAATGGAGAACAATGCACAAGATTAAAAGCAAACAACAAAATGTACAAGGTTGA
CACTCTTCAGGATAACAACCATAACTAGTTTACTTGAACTTCATTTATTTTCAAGTCTCCACAAT
GCAATATTAAACCCCATACACACAACAGGAAATAACTTGCTAAGTTAAAAGTTAACA
Found at i:445000 original size:43 final size:43
Alignment explanation
Indices: 444925--445008 Score: 107
Period size: 43 Copynumber: 2.0 Consensus size: 43
444915 ATGGATCATA
* *
444925 AACTTATATGAAGGGTGTTAATTCTGCAGTATCACAAAAGGGT
1 AACTTAAATAAAGGGTGTTAATTCTGCAGTATCACAAAAGGGT
* * *
444968 AACTTAAATAAAGGGTG-TAAGTTTTGCTGTATCACAGAAGG
1 AACTTAAATAAAGGGTGTTAA-TTCTGCAGTATCACAAAAGG
445009 AAATCATTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 3 0.09
43 32 0.91
ACGTcount: A:0.36, C:0.11, G:0.24, T:0.30
Consensus pattern (43 bp):
AACTTAAATAAAGGGTGTTAATTCTGCAGTATCACAAAAGGGT
Found at i:446306 original size:31 final size:31
Alignment explanation
Indices: 446268--446338 Score: 142
Period size: 31 Copynumber: 2.3 Consensus size: 31
446258 GACTCGCGTT
446268 ATCGCGCGAGATCAGTCGATAAAGGACCAGA
1 ATCGCGCGAGATCAGTCGATAAAGGACCAGA
446299 ATCGCGCGAGATCAGTCGATAAAGGACCAGA
1 ATCGCGCGAGATCAGTCGATAAAGGACCAGA
446330 ATCGCGCGA
1 ATCGCGCGA
446339 CTTTAGCTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.34, C:0.24, G:0.30, T:0.13
Consensus pattern (31 bp):
ATCGCGCGAGATCAGTCGATAAAGGACCAGA
Found at i:449925 original size:20 final size:20
Alignment explanation
Indices: 449889--449926 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
449879 ATCTTATTCC
**
449889 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTACATTCCCA
449909 CTGGTAATCTTACATTCC
1 CTGGTAATCTTACATTCC
449927 GTGAACCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (20 bp):
CTGGTAATCTTACATTCCCA
Found at i:457729 original size:12 final size:12
Alignment explanation
Indices: 457708--457733 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
457698 TTGAGGAATA
457708 GGAGGAGGATTT
1 GGAGGAGGATTT
457720 GGAGGAGGATTT
1 GGAGGAGGATTT
457732 GG
1 GG
457734 TTGACGACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.54, T:0.23
Consensus pattern (12 bp):
GGAGGAGGATTT
Found at i:458434 original size:20 final size:20
Alignment explanation
Indices: 458404--458488 Score: 66
Period size: 20 Copynumber: 4.0 Consensus size: 20
458394 CAGAACCACA
458404 GGGGGGTATCGATTCCCCTGT
1 GGGGGG-ATCGATTCCCCTGT
*
458425 GGGGGGATCGGTTCCCCT-T
1 GGGGGGATCGATTCCCCTGT
* *
458444 CAAAGGGGGAATCGATT-CCCTCAT
1 ----GGGGGGATCGATTCCCCT-GT
458468 GGGGGGATCGATTCCCTCTGT
1 GGGGGGATCGATTCCC-CTGT
458489 ACCAAAATGC
Statistics
Matches: 51, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
19 1 0.02
20 23 0.45
21 9 0.18
22 6 0.12
23 11 0.22
24 1 0.02
ACGTcount: A:0.14, C:0.25, G:0.35, T:0.26
Consensus pattern (20 bp):
GGGGGGATCGATTCCCCTGT
Found at i:472165 original size:11 final size:11
Alignment explanation
Indices: 472149--472183 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
472139 ATATAAAAAA
472149 GAAGTGCAAGT
1 GAAGTGCAAGT
472160 GAAGTGCAAGT
1 GAAGTGCAAGT
*
472171 G-AGTACAAGT
1 GAAGTGCAAGT
472181 GAA
1 GAA
472184 AGAAAAAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 9 0.41
11 13 0.59
ACGTcount: A:0.40, C:0.09, G:0.34, T:0.17
Consensus pattern (11 bp):
GAAGTGCAAGT
Found at i:473538 original size:14 final size:14
Alignment explanation
Indices: 473502--473539 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
473492 TATATATTTA
473502 TTTTATATTAATAT
1 TTTTATATTAATAT
*
473516 TATTATATTAATAT
1 TTTTATATTAATAT
*
473530 TTTTTTATTA
1 TTTTATATTA
473540 TTCTTTTCTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (14 bp):
TTTTATATTAATAT
Found at i:474282 original size:17 final size:16
Alignment explanation
Indices: 474241--474312 Score: 81
Period size: 17 Copynumber: 4.2 Consensus size: 16
474231 ATTCATGCAT
474241 CTAGTTCATTGAATAAA
1 CTAGTTCATT-AATAAA
*
474258 GTTAGTTCATTAATTAAA
1 -CTAGTTCATTAA-TAAA
*
474276 CTAGTTCATTCATCAAA
1 CTAGTTCATTAAT-AAA
474293 CTAGTTCATTTAATAAA
1 CTAGTTCA-TTAATAAA
474310 CTA
1 CTA
474313 ACTCTTAATT
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
16 1 0.02
17 29 0.62
18 17 0.36
ACGTcount: A:0.39, C:0.14, G:0.08, T:0.39
Consensus pattern (16 bp):
CTAGTTCATTAATAAA
Found at i:474790 original size:25 final size:25
Alignment explanation
Indices: 474714--474793 Score: 142
Period size: 25 Copynumber: 3.2 Consensus size: 25
474704 AAGCATTCAA
474714 GGCTGATTTAATCATCCAAACCAAG
1 GGCTGATTTAATCATCCAAACCAAG
*
474739 GACTGATTTAATCATCCAAACCAAG
1 GGCTGATTTAATCATCCAAACCAAG
*
474764 GGCTGATTTAATCATTCAAACCAAG
1 GGCTGATTTAATCATCCAAACCAAG
474789 GGCTG
1 GGCTG
474794 TTCATATTCT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 52 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (25 bp):
GGCTGATTTAATCATCCAAACCAAG
Found at i:477662 original size:17 final size:16
Alignment explanation
Indices: 477612--477667 Score: 69
Period size: 16 Copynumber: 3.4 Consensus size: 16
477602 TAAAAAATTC
*
477612 AAAATATATTTAATTT
1 AAAATATATTTATTTT
*
477628 ATAATCATA-TTATTTT
1 AAAAT-ATATTTATTTT
477644 AAAATATATTTATTTTT
1 AAAATATATTTA-TTTT
477661 AAAATAT
1 AAAATAT
477668 CAGAAAAGGA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
15 3 0.09
16 17 0.50
17 14 0.41
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
AAAATATATTTATTTT
Found at i:479224 original size:3 final size:3
Alignment explanation
Indices: 479216--479308 Score: 114
Period size: 3 Copynumber: 31.0 Consensus size: 3
479206 TATATATATT
* * *
479216 TAA TAA TAA TAA TAA TAA TAA TAA TAT TTA TAA TAA TAA TAA TTA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
479264 TAA TTA TAA TAA TAA TAA TTA TTA GAA TTA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
479309 ATTAATATGG
Statistics
Matches: 76, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 76 1.00
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:479253 original size:24 final size:24
Alignment explanation
Indices: 479216--479308 Score: 132
Period size: 24 Copynumber: 3.9 Consensus size: 24
479206 TATATATATT
*
479216 TAATAATAATAATAATAATAATAA
1 TAATTATAATAATAATAATAATAA
* *
479240 TATTTATAATAATAATAATTATAA
1 TAATTATAATAATAATAATAATAA
* *
479264 TAATTATAATAATAATAATTATTA
1 TAATTATAATAATAATAATAATAA
*
479288 GAATTATAATAATAATAATAA
1 TAATTATAATAATAATAATAA
479309 ATTAATATGG
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 62 1.00
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (24 bp):
TAATTATAATAATAATAATAATAA
Found at i:479918 original size:223 final size:222
Alignment explanation
Indices: 479617--480185 Score: 846
Period size: 223 Copynumber: 2.5 Consensus size: 222
479607 ATCTCCTTCT
* * *
479617 GTGATGGAATTATGCAAAAAGTTGAACAAGCTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAG
1 GTGAT-GAATTAGGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
* *
479682 ATGAGTTCTTCTCATTATGAACT-TCTCTGGAAAAGCTGCTCCATCAAGTGATGTATTTGA-GCA
65 ATGAGTTCTTCTCATTATGAACTCTCTCTGGAAAAGCTGATCCATCAAGTGATG-ATTTCAGGCA
* *
479745 AAAGGTTGAACAAATTCTTCTCATTATGAACTTT-TTCTTCTTTCTTCAGATGAATTCTTCTCAT
129 AAAGGTTGAACAAATTC-T-TCATTATGAA-TTTCTTCTTCCTTCTTCAGACGAATTCTT-TCAT
479809 TATGAAC-TTCTCTGGAAAAACTGATCCATCAA
190 TATGAACTTTCTCTGGAAAAACTGATCCATCAA
** *
479841 GTGATGAATTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAA-TTCTTTTTCCTTCTTCAG
1 GTGATGAATT-AGGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
* *
479905 ATGAGTTCTTCTCATTATGAACTTCTCTCTGGAAAAGCTAATCCATCAAGTGATGAATTCAGGCA
65 ATGAGTTCTTCTCATTATGAAC-TCTCTCTGGAAAAGCTGATCCATCAAGTGATGATTTCAGGCA
*
479970 AAAGGTTGAACAAATTCTTCATTATGAATTTCTTCTTCCTTCTTCAGACGAGTTCTTTCATTATG
129 AAAGGTTGAACAAATTCTTCATTATGAATTTCTTCTTCCTTCTTCAGACGAATTCTTTCATTATG
*
480035 AACTTTCTCTGGAAAAGCTGATCCATCAA
194 AACTTTCTCTGGAAAAACTGATCCATCAA
* *
480064 GTGATGGATTTGAGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTT-TTCTTCCTTC-TCAG
1 GTGATGAATTAG-GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
*
480127 ATGAGTTCTTCTCATTATGAACTCTCTCTGGAAAAGCTGATCCATCAAGTAATGGATTT
65 ATGAGTTCTTCTCATTATGAACTCTCTCTGGAAAAGCTGATCCATCAAGTGAT-GATTT
480186 AAATCTTTGC
Statistics
Matches: 314, Mismatches: 22, Indels: 20
0.88 0.06 0.06
Matches are distributed among these distances:
221 29 0.09
222 45 0.14
223 149 0.47
224 43 0.14
225 48 0.15
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.37
Consensus pattern (222 bp):
GTGATGAATTAGGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGA
TGAGTTCTTCTCATTATGAACTCTCTCTGGAAAAGCTGATCCATCAAGTGATGATTTCAGGCAAA
AGGTTGAACAAATTCTTCATTATGAATTTCTTCTTCCTTCTTCAGACGAATTCTTTCATTATGAA
CTTTCTCTGGAAAAACTGATCCATCAA
Found at i:480182 original size:111 final size:113
Alignment explanation
Indices: 479617--480185 Score: 818
Period size: 112 Copynumber: 5.1 Consensus size: 113
479607 ATCTCCTTCT
* * * ** *
479617 GTGATGGAATT-ATGCAAAAAGTTGAACAAGCTCTTCTTATTATGAACTTCTTCTTCCTTCTTCA
1 GTGATGGATTTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
*
479681 GATGAGTTCTTCTCATTATGAACTTCTCTGGAAAAGCTGCTCCATCAA
66 GATGAGTTCTTCTCATTATGAACTTCTCTGGAAAAGCTGATCCATCAA
* * * *
479729 GTGATGTATTTGA-GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTTTTCTTCTTTCTTCA
1 GTGATGGATTTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
* *
479793 GATGAATTCTTCTCATTATGAACTTCTCTGGAAAAACTGATCCATCAA
66 GATGAGTTCTTCTCATTATGAACTTCTCTGGAAAAGCTGATCCATCAA
* *
479841 GTGAT-GAATTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAA-TTCTTTTTCCTTCTTCA
1 GTGATGGATTTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
*
479904 GATGAGTTCTTCTCATTATGAACTTCTCTCTGGAAAAGCTAATCCATCAA
66 GATGAGTTCTTCTCATTATGAAC-T-TCTCTGGAAAAGCTGATCCATCAA
* *
479954 GTGAT-GAATTCAGGCAAAAGGTTGAACAAATTC-T-TCATTATGAATTTCTTCTTCCTTCTTCA
1 GTGATGGATTTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
*
480016 GACGAGTTCTT-TCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAA
66 GATGAGTTCTTCTCATTATGAAC-TTCTCTGGAAAAGCTGATCCATCAA
* **
480064 GTGATGGATTTGA-GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTT-TTCTTCCTTC-TCA
1 GTGATGGATTTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
480126 GATGAGTTCTTCTCATTATGAACTCTCTCTGGAAAAGCTGATCCATCAA
66 GATGAGTTCTTCTCATTATGAACT-TCTCTGGAAAAGCTGATCCATCAA
*
480175 GTAATGGATTT
1 GTGATGGATTT
480186 AAATCTTTGC
Statistics
Matches: 417, Mismatches: 30, Indels: 21
0.89 0.06 0.04
Matches are distributed among these distances:
110 60 0.14
111 124 0.30
112 177 0.42
113 56 0.13
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.37
Consensus pattern (113 bp):
GTGATGGATTTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
GATGAGTTCTTCTCATTATGAACTTCTCTGGAAAAGCTGATCCATCAA
Done.