genome.fa.s6207.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006207.1 Hibiscus syriacus cultivar Beakdansim tig00014778_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53175

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--58	23	2.6	22	78	10	66	31	24	22	22	1.99
1--52	22	2.3	23	83	3	70	28	26	25	19	1.98
68--283	101	2.1	102	92	2	355	36	22	13	27	1.92
1618--1664	20	2.2	21	88	7	69	21	17	27	34	1.95
2353--2410	3	20.3	3	75	16	52	67	1	3	27	1.17
2350--2410	29	2.1	29	84	6	79	67	1	3	27	1.16
2360--2432	29	2.6	28	81	14	80	63	2	5	28	1.31
3533--3611	3	25.7	3	85	14	108	68	0	0	31	0.90
4185--4735	124	5.0	102	71	19	440	27	17	15	39	1.90
3837--4735	226	4.0	226	96	0	1656	27	17	15	39	1.90
7614--7837	114	2.0	114	95	0	403	29	21	16	32	1.95
10133--10157	10	2.5	10	100	0	50	0	0	8	92	0.40
13458--13511	14	3.8	14	80	2	54	50	9	14	25	1.73
13662--13697	13	2.8	13	100	0	72	58	16	8	16	1.61
15965--16016	3	17.3	3	81	15	63	65	0	3	30	1.10
17190--17275	3	27.7	3	84	13	104	67	1	0	31	0.98
17190--17273	30	2.7	30	88	5	123	67	1	0	30	0.98
18209--18251	17	2.6	16	78	7	50	39	25	0	34	1.56
20878--20955	23	3.3	23	83	1	93	34	23	17	24	1.96
20965--21179	103	2.1	103	93	1	369	36	22	12	27	1.91
22552--22611	20	2.9	21	90	7	95	18	26	25	30	1.98
23720--23803	43	2.0	43	86	9	118	32	11	19	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23829--23988	82	1.9	83	86	3	225	37	16	18	27	1.92
23859--23983	41	3.0	41	73	18	141	35	18	19	27	1.95
23862--23990	42	3.1	41	73	17	140	35	17	17	30	1.92
24011--24163	41	3.8	39	76	7	128	37	11	16	34	1.85
24721--25040	83	3.9	83	78	5	227	29	20	16	34	1.94
24720--25028	166	1.9	166	84	2	415	28	20	16	34	1.94
24703--25040	41	8.2	41	81	4	322	29	20	16	33	1.95
25020--25123	43	2.5	41	79	13	113	38	11	12	37	1.80
33575--33631	21	2.7	22	73	13	57	43	21	33	1	1.63
33612--33684	21	3.5	21	77	3	76	42	21	32	2	1.67
34082--34436	43	8.2	42	79	9	340	32	23	14	28	1.94
34111--34447	173	1.9	174	83	3	428	34	23	13	28	1.93
34082--34393	130	2.4	129	85	4	389	33	23	15	28	1.95
36232--36257	12	2.2	12	100	0	52	46	7	23	23	1.78
37345--37394	20	2.5	19	75	9	55	34	14	18	34	1.90
38453--38511	26	2.3	26	80	11	70	50	5	5	38	1.46
38430--38511	22	3.4	25	79	14	84	52	3	3	40	1.37
45532--45664	60	2.2	60	82	4	162	39	5	21	34	1.76
45753--46054	151	2.0	151	99	0	595	40	10	15	33	1.82
47918--47959	21	2.0	21	85	0	57	9	35	38	16	1.81
50905--50937	13	2.5	14	90	9	52	33	24	12	30	1.91

Tables:   1

The End!