genome.fa.s6208.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006208.1 Hibiscus syriacus cultivar Beakdansim tig00014782_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84142

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1661--1715	29	1.9	28	96	3	101	25	20	21	32	1.97
1739--1789	25	2.0	25	92	0	84	15	11	29	43	1.82
1904--1938	6	6.0	6	96	3	63	31	51	17	0	1.45
2421--2501	6	14.7	6	96	3	113	0	18	53	28	1.45
2640--2687	20	2.4	20	82	0	60	45	22	18	12	1.83
2662--2716	27	2.0	27	92	0	92	41	27	21	9	1.83
2689--2728	20	2.0	20	90	0	62	50	22	17	10	1.76
21467--21581	32	3.6	32	86	1	151	32	26	21	20	1.98
24188--24215	14	2.0	14	100	0	56	14	14	14	57	1.66
24175--24225	24	2.0	26	92	7	88	17	13	13	54	1.70
27988--28049	23	2.8	22	78	7	63	20	22	33	22	1.97
28034--28071	20	1.9	20	88	0	58	18	26	31	23	1.97
39945--40051	3	34.7	3	88	5	160	34	0	1	62	1.12
41269--41306	20	1.9	20	88	0	58	28	0	5	65	1.14
42132--42168	15	2.7	15	88	12	53	24	5	8	62	1.44
45457--45489	14	2.3	15	94	5	59	45	0	3	51	1.16
52744--52809	17	3.9	17	78	9	64	83	0	12	4	0.79
53750--54515	52	14.7	52	96	0	1381	23	14	23	38	1.92
55078--55407	113	2.9	113	94	0	579	37	14	20	27	1.92
55355--55473	61	1.9	62	91	1	195	37	10	20	31	1.87
55241--55582	175	2.0	175	91	0	549	39	12	19	28	1.89
55416--55813	114	3.5	114	88	1	629	38	13	20	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56106--56206	3	32.7	3	88	5	148	34	0	1	62	1.13
67222--67288	23	2.9	23	88	0	107	31	25	25	17	1.97
67506--67544	16	2.4	16	95	0	69	43	23	5	28	1.75
68497--68548	9	5.8	9	76	14	54	51	13	1	32	1.52
68499--68546	19	2.6	18	86	3	60	52	14	2	31	1.54
68517--68563	19	2.6	19	83	6	53	53	23	0	23	1.47
68829--68897	23	3.4	19	72	16	57	23	26	21	28	1.99
68935--68987	19	2.8	19	100	0	106	22	30	16	30	1.96
70116--70513	201	2.0	201	98	0	778	29	19	3	46	1.67
71298--71349	26	2.0	26	100	0	104	38	34	3	23	1.73

Tables:   1

The End!