Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006209.1 Hibiscus syriacus cultivar Beakdansim tig00014789_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80570

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2175--2231
30
1.9
30
92
0
96
35
5
15
43
1.70
11096--11174
21
3.9
21
85
9
110
16
25
30
27
1.97
11096--11174
39
2.0
41
85
7
108
16
25
30
27
1.97
12660--13041
190
2.0
189
99
0
755
42
14
17
25
1.87
17903--17934
15
2.1
15
100
0
64
15
31
28
25
1.96
19249--19284
18
2.0
18
88
0
54
52
0
16
30
1.44
21313--21348
18
2.0
18
88
0
54
52
0
16
30
1.44
22480--22588
24
4.5
24
72
4
85
21
15
16
46
1.83
24725--24798
13
6.0
12
75
21
57
16
47
18
17
1.83
24738--24796
18
3.3
18
95
0
100
16
49
20
13
1.80
26128--26163
18
2.0
18
88
0
54
52
0
16
30
1.44
27281--27389
24
4.5
24
72
4
85
21
15
16
46
1.83
28175--28209
2
17.5
2
100
0
70
48
0
0
51
1.00
31624--31679
19
2.9
19
74
12
53
42
0
1
55
1.10
31796--31821
2
13.0
2
100
0
52
50
0
0
50
1.00
44809--45112
124
2.4
124
91
1
466
32
17
26
23
1.96
45839--45992
36
4.2
36
84
2
166
35
23
18
22
1.96
46374--46777
51
7.8
50
88
4
511
32
21
24
22
1.98
46362--46777
155
2.7
153
87
3
582
32
20
24
23
1.98
46775--47101
55
6.0
55
89
3
434
29
14
27
28
1.95
54016--54057
17
2.5
17
84
3
59
40
0
2
57
1.12
74890--74952
28
2.3
28
94
2
110
12
6
36
44
1.68

Tables:   1

The End!