genome.fa.s621.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000621.1 Hibiscus syriacus cultivar Beakdansim tig00001199_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60530

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
871--896	13	2.0	13	100	0	52	15	23	0	61	1.33
1558--1603	21	2.2	21	88	0	65	36	28	15	19	1.92
1565--1604	21	1.9	21	94	0	71	32	30	15	22	1.94
1626--1663	19	2.1	19	95	5	69	21	31	15	31	1.94
1741--1789	19	2.6	19	84	9	57	24	30	18	26	1.98
1619--1788	64	2.7	63	78	13	179	28	25	17	28	1.97
3706--3752	21	2.3	21	85	10	62	53	2	10	34	1.48
10156--10201	21	2.2	21	88	0	65	36	28	15	19	1.92
10163--10202	21	1.9	21	94	0	71	32	30	15	22	1.94
10228--10266	19	2.1	19	95	0	69	20	33	15	30	1.94
10184--10392	64	3.2	64	80	7	212	30	23	16	28	1.97
10344--10392	19	2.6	19	84	9	57	24	30	18	26	1.98
11497--11555	21	2.8	21	97	0	109	28	37	23	10	1.88
11517--11704	73	2.5	74	81	6	220	30	27	22	19	1.98
17420--17499	22	3.6	22	72	8	63	20	31	25	23	1.98
17859--17888	10	3.0	10	90	0	51	30	10	6	53	1.60
19779--19823	23	2.0	23	86	4	65	31	0	40	28	1.57
20178--20336	55	2.9	55	92	0	264	29	23	23	23	1.99
21068--21332	44	6.0	44	85	0	359	25	20	12	41	1.88
21776--21890	61	1.9	61	98	0	221	25	23	14	36	1.93
27688--27722	18	1.9	18	100	0	70	11	22	48	17	1.79
27699--27724	13	2.0	13	100	0	52	15	23	46	15	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34206--34246	13	3.4	13	80	19	61	12	21	48	17	1.79
34229--34272	21	2.0	22	86	4	63	22	22	36	18	1.95
34251--34314	31	2.1	31	94	2	112	28	29	25	17	1.97
34296--34334	19	2.1	19	95	0	69	33	33	15	17	1.92
37071--37380	44	7.0	44	90	0	458	23	22	12	41	1.87
41975--42087	60	1.9	60	83	3	147	46	4	20	29	1.70
42495--42530	13	2.8	13	95	4	65	0	13	5	80	0.88
45678--45824	60	2.4	59	85	8	183	29	16	19	34	1.93
45677--45770	29	3.2	28	70	14	82	31	13	18	36	1.90
46034--46069	2	18.0	2	100	0	72	50	0	0	50	1.00
46253--46282	15	2.0	15	100	0	60	13	46	0	40	1.43
49157--49201	23	2.0	23	86	0	63	33	22	22	22	1.97
49167--49219	23	2.3	23	87	6	72	35	20	22	20	1.96
49167--49229	23	2.7	23	82	0	63	38	19	20	22	1.94
50653--50710	20	2.6	22	89	10	84	25	22	22	29	1.99
50825--50872	19	2.5	19	93	0	87	16	29	20	33	1.95
50699--50857	64	2.5	64	86	7	209	25	25	17	31	1.97
54189--54251	23	2.8	22	88	7	99	30	26	26	15	1.96
55668--55824	62	2.5	60	79	8	190	24	23	20	31	1.98
55668--55824	63	2.5	58	78	14	179	24	23	20	31	1.98
59121--59299	58	3.1	57	81	11	186	32	25	5	36	1.78

Tables:   1

The End!