Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006210.1 Hibiscus syriacus cultivar Beakdansim tig00014791_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62708
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:176 original size:39 final size:37
Alignment explanation
Indices: 132--247 Score: 126
Period size: 37 Copynumber: 3.0 Consensus size: 37
122 GTTTCTCTCG
* *
132 AAACAAGTGTTGTCTCGCTAGAGACAATATTTCTTAAAA
1 AAACAAAT-TTGTCTCGCTTGAGACAAT-TTTCTTAAAA
* **
171 AAACAAATTATGTCTCGCTTGAGACAGTTTT-TTCTAA
1 AAACAAATT-TGTCTCGCTTGAGACAATTTTCTTAAAA
*
208 AACCAAATCTTGTCTCGCTTGAGACAATTTCTCTTAAAA
1 AAACAAAT-TTGTCTCGCTTGAGACAATTT-TCTTAAAA
247 A
1 A
248 TAAATTCCGT
Statistics
Matches: 64, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
37 30 0.47
38 6 0.09
39 28 0.44
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34
Consensus pattern (37 bp):
AAACAAATTTGTCTCGCTTGAGACAATTTTCTTAAAA
Found at i:260 original size:37 final size:36
Alignment explanation
Indices: 142--270 Score: 118
Period size: 37 Copynumber: 3.4 Consensus size: 36
132 AAACAAGTGT
* *
142 TGTCTCGCTAGAGACAATATTTCTTAAAAAAACAAATTA
1 TGTCTCGCTTGAGACAAT-TTTCTT--AAAAACAAATTC
* * *
181 TGTCTCGCTTGAGACAGTTTTTTCTAAAACCAAA-TC
1 TGTCTCGCTTGAGACAATTTTCT-TAAAAACAAATTC
*
217 TTGTCTCGCTTGAGACAATTTCTCTTAAAAATAAATTC
1 -TGTCTCGCTTGAGACAATTT-TCTTAAAAACAAATTC
*
255 CGTCTCAG-TTGAGACA
1 TGTCTC-GCTTGAGACA
271 GTTTCCTTCG
Statistics
Matches: 75, Mismatches: 10, Indels: 12
0.77 0.10 0.12
Matches are distributed among these distances:
36 1 0.01
37 48 0.64
38 9 0.12
39 17 0.23
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.34
Consensus pattern (36 bp):
TGTCTCGCTTGAGACAATTTTCTTAAAAACAAATTC
Found at i:506 original size:65 final size:64
Alignment explanation
Indices: 402--1000 Score: 482
Period size: 66 Copynumber: 9.2 Consensus size: 64
392 TTTGGAAGTT
* * * * * *
402 GTTTCACTTGAAACATAATCTTTGATATCGTTTCCCTTGAAATAAATTTTGTCTCTCTTGAAACA
1 GTTTCTCTTGAAACAAAATCTTTGAGAT-GTTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACA
** *
467 GTTTCTCTTGAAACATCATCTTTGAGATCGTTTCTCTTGAAACGAATTTTGTCTCTCTTGAGACA
1 GTTTCTCTTGAAACAAAATCTTTGAGAT-GTTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACA
* * * * * *
532 ATTTCTC-TGAAAAAAAAAATCTTTGAGTATGTTTCCCTTAAAACAAAGCTTTATCTCTCTT--G
1 GTTTCTCTTG--AAACAAAATCTTTGAG-ATGTTTCTCTTGAAACAAA-TTTTGTCTCTCTTGAG
594 --A
62 ACA
* * * * *
595 GTTTCTTTTGAAATAAAAATCTATAAGCATGTTTCTCTTGAAACAAAGTTTTTTCTCTCTTGAGA
1 GTTTCTCTTGAAA-CAAAATCTTTGAG-ATGTTTCTCTTGAAACAAA-TTTTGTCTCTCTTGAGA
660 CA
63 CA
* * * * *
662 ATTTCTTTTGAAATAAAAATCTTTGAG-TGTTTCTCTTAAAACAAGTTTTGTCTCTCTTGAGACA
1 GTTTCTCTTGAAA-CAAAATCTTTGAGATGTTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACA
*
726 -TTTCTCTTGAAACAAAAGTCTTTGAGTGTGTTTCTCTTGAAACAAAGTTTTGTCTCTCTTGAGA
1 GTTTCTCTTGAAACAAAA-TCTTTGAG-ATGTTTCTCTTGAAACAAA-TTTTGTCTCTCTTGAGA
790 CA
63 CA
* * ** * * * *
792 GTTTTTTATTGGGGA-AAAATCTTTGAGATTGTTTCCCTTGAAATAAGTTTTGTCTCCCTTGAGA
1 G-TTTCTCTT-GAAACAAAATCTTTGAGA-TGTTTCTCTTGAAACAAATTTTGTCTCTCTTGAGA
856 CA
63 CA
* * * * * * * *
858 ATTTCTCTTGAAATACAAATCTTTGAG-TCTTTTTTCCTTGAAATAAGTTTTTTCTCTCTTAAGA
1 GTTTCTCTTGAAACA-AAATCTTTGAGAT-GTTTCT-CTTGAAACAAATTTTGTCTCTCTTGAGA
*
922 TA
63 CA
* * * * * *
924 GTTTCCCTTGAAACCCAAA-CATTGAGGTTGTTTCCCTTGAAACAAAATTTTATCTCTCTTGAGA
1 GTTTCTCTTGAAA-CAAAATCTTTGA-GATGTTTCTCTTGAAAC-AAATTTTGTCTCTCTTGAGA
988 CA
63 CA
990 -TTTCTCTTGAA
1 GTTTCTCTTGAA
1001 TAAATCCCTA
Statistics
Matches: 438, Mismatches: 70, Indels: 52
0.78 0.12 0.09
Matches are distributed among these distances:
62 7 0.02
63 65 0.15
64 25 0.06
65 130 0.30
66 137 0.31
67 62 0.14
68 10 0.02
69 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.42
Consensus pattern (64 bp):
GTTTCTCTTGAAACAAAATCTTTGAGATGTTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACA
Found at i:810 original size:130 final size:129
Alignment explanation
Indices: 409--1000 Score: 497
Period size: 130 Copynumber: 4.5 Consensus size: 129
399 GTTGTTTCAC
* * * * * * *
409 TTGAAACATAATCTTTGATATCGTTTCCCTTGAAATAAATTTTGTCTCTCTTGAAACAGTTTCTC
1 TTGAAAAAAAATCTTTGAGAT-GTTTCCCTTAAAACAAGTTTTGTCTCTCTTGAGACA-TTTCTC
** * *
474 TTGAAACATCATCTTTGAGATCGTTTCTCTTGAAACGAA-TTTTGTCTCTCTTGAGACAATTTCT
64 TTGAAACAAAATCTTTGAG-TTGTTTCTCTTGAAACAAAGTTTTGTCTCTCTTGAGACAATTT-T
*
538 CTGA
127 -TTA
* * * *
542 --AAAAAAAAATCTTTGAGTATGTTTCCCTTAAAACAAAGCTTTATCTCTCTTGAG---TTTCTT
1 TTGAAAAAAAATCTTTGAG-ATGTTTCCCTTAAAAC-AAGTTTTGTCTCTCTTGAGACATTTCTC
* * * * * *
602 TTGAAATAAAAATCTATAAGCATGTTTCTCTTGAAACAAAGTTTTTTCTCTCTTGAGACAATTTC
64 TTGAAA-CAAAATCTTTGAG-TTGTTTCTCTTGAAACAAAGTTTTGTCTCTCTTGAGACAATTTT
667 TT-
127 TTA
*
669 TTGAAATAAAAATCTTTGAG-TGTTTCTCTTAAAACAAGTTTTGTCTCTCTTGAGACATTTCTCT
1 TTGAAA-AAAAATCTTTGAGATGTTTCCCTTAAAACAAGTTTTGTCTCTCTTGAGACATTTCTCT
*
733 TGAAACAAAAGTCTTTGAGTGTGTTTCTCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTTT
65 TGAAACAAAA-TCTTTGAGT-TGTTTCTCTTGAAACAAAGTTTTGTCTCTCTTGAGACAATTTTT
798 TA
128 TA
*** * * *
800 TTGGGGAAAAATCTTTGAGATTGTTTCCCTTGAAATAAGTTTTGTCTCCCTTGAGACAATTTCTC
1 TTGAAAAAAAATCTTTGAGA-TGTTTCCCTTAAAACAAGTTTTGTCTCTCTTGAGAC-ATTTCTC
* * * * * * *
865 TTGAAATACAAATCTTTGAGTCT-TTTTTCCTTGAAA-TAAGTTTTTTCTCTCTTAAGA-TAGTT
64 TTGAAACA-AAATCTTTGAGT-TGTTTCT-CTTGAAACAAAGTTTTGTCTCTCTTGAGACAATTT
***
927 TCCC
126 TTTA
** * * * * *
931 TTGAAACCCAAA-CATTGAGGTTGTTTCCCTTGAAACAAAATTTTATCTCTCTTGAGACATTTCT
1 TTGAAA-AAAAATCTTTGA-GATGTTTCCCTTAAAAC-AAGTTTTGTCTCTCTTGAGACATTTCT
995 CTTGAA
63 CTTGAA
1001 TAAATCCCTA
Statistics
Matches: 373, Mismatches: 65, Indels: 44
0.77 0.13 0.09
Matches are distributed among these distances:
127 17 0.05
128 26 0.07
129 31 0.08
130 107 0.29
131 65 0.17
132 93 0.25
133 31 0.08
134 3 0.01
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.42
Consensus pattern (129 bp):
TTGAAAAAAAATCTTTGAGATGTTTCCCTTAAAACAAGTTTTGTCTCTCTTGAGACATTTCTCTT
GAAACAAAATCTTTGAGTTGTTTCTCTTGAAACAAAGTTTTGTCTCTCTTGAGACAATTTTTTA
Found at i:1234 original size:124 final size:124
Alignment explanation
Indices: 1004--1235 Score: 283
Period size: 124 Copynumber: 1.9 Consensus size: 124
994 TCTTGAATAA
* * * *
1004 ATCCCTAAAGATGGCCAGCCGTCCTCATCGCGTAGGAACCGTGTCATCCACTGACCATATCTCCT
1 ATCCCTAAAGATGGCCAGCCGTCCTCATCACGTAGGAACCGTGTCATCCACGGACCAGACCTCCT
* * * * *
1069 CATCATTAGGAGCTGTGTCACCCTTAGATAGCCAGTCGTCCTCTCACGAACGTGTTATC
66 CACCATTAGGAGCTATGTCACCCCTAGATAACCAATCGTCCTCTCACGAACGTGTTATC
* * **
1128 ATCCCTAAAGATGGCCCA-CCGTTCTCATCACGTAGGAACCGTGTCATCCAGGGACTGGACCTCC
1 ATCCCTAAAGATGG-CCAGCCGTCCTCATCACGTAGGAACCGTGTCATCCACGGACCAGACCTCC
1192 TCACCATGTA-GAG-TAATGTCACCCCTAGATAACCAAAT-GTCCTC
65 TCACCAT-TAGGAGCT-ATGTCACCCCTAGATAACC-AATCGTCCTC
1236 ATCGTGTAGG
Statistics
Matches: 91, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
123 1 0.01
124 83 0.91
125 7 0.08
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (124 bp):
ATCCCTAAAGATGGCCAGCCGTCCTCATCACGTAGGAACCGTGTCATCCACGGACCAGACCTCCT
CACCATTAGGAGCTATGTCACCCCTAGATAACCAATCGTCCTCTCACGAACGTGTTATC
Found at i:1520 original size:18 final size:18
Alignment explanation
Indices: 1483--1527 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
1473 CAGGTCTTAA
* *
1483 ATTATATTAATTATTATT
1 ATTATATTAATAAATATT
*
1501 ATTATATTAATAAATGTT
1 ATTATATTAATAAATATT
1519 ATTTATATT
1 A-TTATATT
1528 TTAAAAGCCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 16 0.70
19 7 0.30
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (18 bp):
ATTATATTAATAAATATT
Found at i:3229 original size:2 final size:2
Alignment explanation
Indices: 3222--3273 Score: 97
Period size: 2 Copynumber: 26.5 Consensus size: 2
3212 ACATACATAC
3222 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3263 AT AT AT AT AT A
1 AT AT AT AT AT A
3274 GTATGTCTCT
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 48 0.98
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7922 original size:22 final size:22
Alignment explanation
Indices: 7896--7944 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
7886 GGTCTGACCC
7896 GACCCGACCCAACCCGACCGTT
1 GACCCGACCCAACCCGACCGTT
** *
7918 GACCCGACCGGACCTGACCGTT
1 GACCCGACCCAACCCGACCGTT
7940 GACCC
1 GACCC
7945 CTGACCGTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.20, C:0.47, G:0.22, T:0.10
Consensus pattern (22 bp):
GACCCGACCCAACCCGACCGTT
Found at i:7967 original size:13 final size:12
Alignment explanation
Indices: 7911--7971 Score: 63
Period size: 14 Copynumber: 5.0 Consensus size: 12
7901 GACCCAACCC
*
7911 GACCGTTGACCC
1 GACCGTTGACCT
7923 GACCG--GACCT
1 GACCGTTGACCT
7933 GACCGTTGACCCCT
1 GACCGTTGA--CCT
7947 GACCGTTGACCGT
1 GACCGTTGACC-T
*
7960 GACTGTTGACCT
1 GACCGTTGACCT
7972 CTTTTGACCA
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
10 9 0.21
12 10 0.24
13 11 0.26
14 12 0.29
ACGTcount: A:0.16, C:0.36, G:0.26, T:0.21
Consensus pattern (12 bp):
GACCGTTGACCT
Found at i:15167 original size:20 final size:20
Alignment explanation
Indices: 15142--15189 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
15132 GCAGCTGGAA
* *
15142 AACCGGTTTGACCGGTTTTG
1 AACCGGTTTGACCGATTTCG
15162 AACCGGTTTTGACCGATTTCG
1 AACCGG-TTTGACCGATTTCG
15183 -ACCGGTT
1 AACCGGTT
15190 CGAACCAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 11 0.44
21 12 0.48
ACGTcount: A:0.17, C:0.23, G:0.27, T:0.33
Consensus pattern (20 bp):
AACCGGTTTGACCGATTTCG
Found at i:15168 original size:11 final size:11
Alignment explanation
Indices: 15142--15173 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
15132 GCAGCTGGAA
15142 AACCGG-TTTG
1 AACCGGTTTTG
15152 -ACCGGTTTTG
1 AACCGGTTTTG
15162 AACCGGTTTTG
1 AACCGGTTTTG
15173 A
1 A
15174 CCGATTTCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
9 5 0.25
10 4 0.20
11 11 0.55
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.34
Consensus pattern (11 bp):
AACCGGTTTTG
Found at i:15176 original size:10 final size:10
Alignment explanation
Indices: 15143--15189 Score: 60
Period size: 10 Copynumber: 4.7 Consensus size: 10
15133 CAGCTGGAAA
15143 ACCGG-TTTG
1 ACCGGTTTTG
15152 ACCGGTTTTG
1 ACCGGTTTTG
15162 AACCGGTTTTG
1 -ACCGGTTTTG
* *
15173 ACCGATTTCG
1 ACCGGTTTTG
15183 ACCGGTT
1 ACCGGTT
15190 CGAACCAATC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
9 5 0.15
10 18 0.55
11 10 0.30
ACGTcount: A:0.15, C:0.23, G:0.28, T:0.34
Consensus pattern (10 bp):
ACCGGTTTTG
Found at i:15227 original size:19 final size:19
Alignment explanation
Indices: 15200--15249 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
15190 CGAACCAATC
*
15200 TGACTAGTCTGAATCAGTT
1 TGACCAGTCTGAATCAGTT
*
15219 TGACCAGTCTGAATCGGTT
1 TGACCAGTCTGAATCAGTT
*
15238 TGACCGGTCTGA
1 TGACCAGTCTGA
15250 CCCGACCCGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (19 bp):
TGACCAGTCTGAATCAGTT
Found at i:15269 original size:17 final size:17
Alignment explanation
Indices: 15247--15279 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
15237 TTGACCGGTC
15247 TGACCCGACCCGACCGT
1 TGACCCGACCCGACCGT
15264 TGACCCGACCCGACCG
1 TGACCCGACCCGACCG
15280 ACCGTTAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.48, G:0.24, T:0.09
Consensus pattern (17 bp):
TGACCCGACCCGACCGT
Found at i:15292 original size:7 final size:7
Alignment explanation
Indices: 15279--15316 Score: 60
Period size: 7 Copynumber: 5.6 Consensus size: 7
15269 CGACCCGACC
15279 GACCGTT
1 GACCGTT
*
15286 AACCGTT
1 GACCGTT
15293 GACCGTT
1 GACCGTT
15300 GACCG-T
1 GACCGTT
15306 GACCGTT
1 GACCGTT
15313 GACC
1 GACC
15317 TCCTTTGACC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 6 0.21
7 22 0.79
ACGTcount: A:0.18, C:0.32, G:0.26, T:0.24
Consensus pattern (7 bp):
GACCGTT
Found at i:15310 original size:13 final size:14
Alignment explanation
Indices: 15279--15316 Score: 60
Period size: 13 Copynumber: 2.8 Consensus size: 14
15269 CGACCCGACC
*
15279 GACCGTTAACCGTT
1 GACCGTTGACCGTT
15293 GACCGTTGACCG-T
1 GACCGTTGACCGTT
15306 GACCGTTGACC
1 GACCGTTGACC
15317 TCCTTTGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.18, C:0.32, G:0.26, T:0.24
Consensus pattern (14 bp):
GACCGTTGACCGTT
Found at i:18036 original size:21 final size:21
Alignment explanation
Indices: 17995--18037 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
17985 TCCAGATCGG
* *
17995 GTTCAGGTCGAGTCATTTTCA
1 GTTCAGATCGAGTCATGTTCA
18016 GTTCAGATCGATGTCA-GTTCA
1 GTTCAGATCGA-GTCATGTTCA
18037 G
1 G
18038 GTAAAAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.35
Consensus pattern (21 bp):
GTTCAGATCGAGTCATGTTCA
Found at i:18752 original size:36 final size:38
Alignment explanation
Indices: 18682--18764 Score: 118
Period size: 36 Copynumber: 2.2 Consensus size: 38
18672 ATTTGAAAAA
18682 ATATATATATATATATAATATAAAATTATATATAAACT
1 ATATATATATATATATAATATAAAATTATATATAAACT
* *
18720 ATATTTATAT-TATA-AACTATATAATTAT-TATAAACT
1 ATATATATATATATATAA-TATAAAATTATATATAAACT
18756 ATATATATA
1 ATATATATA
18765 AACTATAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
36 18 0.44
37 14 0.34
38 9 0.22
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.45
Consensus pattern (38 bp):
ATATATATATATATATAATATAAAATTATATATAAACT
Found at i:18773 original size:20 final size:20
Alignment explanation
Indices: 18682--18764 Score: 83
Period size: 18 Copynumber: 4.5 Consensus size: 20
18672 ATTTGAAAAA
18682 ATATATATATA-TATATAA-T
1 ATATATATATATTATA-AACT
*
18701 ATA-AAAT-TATATATAAACT
1 ATATATATATAT-TATAAACT
18720 ATAT-T-TATATTATAAACT
1 ATATATATATATTATAAACT
18738 ATATA-AT-TATTATAAACT
1 ATATATATATATTATAAACT
18756 ATATATATA
1 ATATATATA
18765 AACTATAAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 17
0.74 0.03 0.24
Matches are distributed among these distances:
17 2 0.04
18 34 0.64
19 17 0.32
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.45
Consensus pattern (20 bp):
ATATATATATATTATAAACT
Found at i:18822 original size:14 final size:14
Alignment explanation
Indices: 18803--18844 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
18793 TTATAAAAAT
*
18803 CCTAAATCCTATAC
1 CCTAAATCCTAAAC
* *
18817 CCTAAAACATAAAC
1 CCTAAATCCTAAAC
18831 CCTAAATCCTAAAC
1 CCTAAATCCTAAAC
18845 TTTATAAACT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.45, C:0.33, G:0.00, T:0.21
Consensus pattern (14 bp):
CCTAAATCCTAAAC
Found at i:19008 original size:18 final size:18
Alignment explanation
Indices: 18982--19052 Score: 54
Period size: 18 Copynumber: 3.6 Consensus size: 18
18972 ATAGTATGTG
*
18982 TATACATGTAATGTAAAC
1 TATATATGTAATGTAAAC
*
19000 TATATATGTAACT-TATAATA
1 TATATATGTAA-TGTA-AA-C
19020 TATGTATACATGTAATGTAAAC
1 TA--TAT--ATGTAATGTAAAC
19042 TATATATGTAA
1 TATATATGTAA
19053 CTTATAGTAC
Statistics
Matches: 42, Mismatches: 3, Indels: 16
0.69 0.05 0.26
Matches are distributed among these distances:
18 18 0.43
19 3 0.07
20 5 0.12
22 5 0.12
23 3 0.07
24 8 0.19
ACGTcount: A:0.44, C:0.07, G:0.10, T:0.39
Consensus pattern (18 bp):
TATATATGTAATGTAAAC
Found at i:19026 original size:42 final size:42
Alignment explanation
Indices: 18959--19068 Score: 193
Period size: 42 Copynumber: 2.6 Consensus size: 42
18949 ACAATAATTA
*
18959 ATATATGTAACTTATAGTATGTGTATACATGTAATGTAAACT
1 ATATATGTAACTTATAGTATATGTATACATGTAATGTAAACT
*
19001 ATATATGTAACTTATAATATATGTATACATGTAATGTAAACT
1 ATATATGTAACTTATAGTATATGTATACATGTAATGTAAACT
*
19043 ATATATGTAACTTATAGTACATGTAT
1 ATATATGTAACTTATAGTATATGTAT
19069 GTATAGTATA
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.41
Consensus pattern (42 bp):
ATATATGTAACTTATAGTATATGTATACATGTAATGTAAACT
Found at i:19082 original size:2 final size:2
Alignment explanation
Indices: 19070--19110 Score: 73
Period size: 2 Copynumber: 20.0 Consensus size: 2
19060 TACATGTATG
19070 TA TA GTA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
19111 AATCATATAA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 36 0.95
3 2 0.05
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:19204 original size:7 final size:7
Alignment explanation
Indices: 19194--19267 Score: 60
Period size: 7 Copynumber: 10.6 Consensus size: 7
19184 TATTATATAA
19194 AAACCCT
1 AAACCCT
19201 AAACCCT
1 AAACCCT
*
19208 AAACTCT
1 AAACCCT
**
19215 AAACTTT
1 AAACCCT
*
19222 AAATCCT
1 AAACCCT
19229 AAA-CCT
1 AAACCCT
*
19235 TAACCCTT
1 AAACCC-T
* * *
19243 ACATCAT
1 AAACCCT
19250 AAACCCT
1 AAACCCT
19257 AAACCCT
1 AAACCCT
19264 AAAC
1 AAAC
19268 ATAAACAATA
Statistics
Matches: 52, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
6 5 0.10
7 44 0.85
8 3 0.06
ACGTcount: A:0.43, C:0.34, G:0.00, T:0.23
Consensus pattern (7 bp):
AAACCCT
Found at i:19367 original size:21 final size:21
Alignment explanation
Indices: 19342--19382 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
19332 AACTTATAGT
*
19342 ACATGCATCATGTATGTATAA
1 ACATGCATCATGTATCTATAA
*
19363 ACATGTATCATGTATCTATA
1 ACATGCATCATGTATCTATA
19383 TACCAGAGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.37
Consensus pattern (21 bp):
ACATGCATCATGTATCTATAA
Found at i:21400 original size:102 final size:101
Alignment explanation
Indices: 21106--21436 Score: 504
Period size: 102 Copynumber: 3.3 Consensus size: 101
21096 AAGAGGTAAC
* * *
21106 TAAATTGTTTAATTTGTAGCTACTGTTGATTTGTTTGTGTTGTTGGTTGTTCATTCAGATTGCTT
1 TAAACTGTTTAATTTATAGCTACTGTTGATTTGTTTGTGTTGTT-GTTGTTCATTCGGATTGCTT
*
21171 TTATAAGGTTGTTAGCTACCTTTATTTACAGTTTAAA
65 TTATAAGGTTGTTAGCTGCCTTTATTTACAGTTTAAA
* * * *
21208 TAAAATGTTTAATTTATAGCTACTGTTGATTTGTTTGTGTTG--GTTTTTCATTCGGATTACTTC
1 TAAACTGTTTAATTTATAGCTACTGTTGATTTGTTTGTGTTGTTGTTGTTCATTCGGATTGCTTT
*
21271 TATAAGGTTGTTAGCTGCCTTTATTTACAATTTAAA
66 TATAAGGTTGTTAGCTGCCTTTATTTACAGTTTAAA
* * *
21307 TAAACTGTTCAATTTATTGCTACTATTGATTTGTTTGTGTTGTTTGTTGTTCATTCGGATTGCTT
1 TAAACTGTTTAATTTATAGCTACTGTTGATTTGTTTGTGTTG-TTGTTGTTCATTCGGATTGCTT
21372 TTATAAGGTTGTTAGCTGCCTTTATTTACAGTTTAAA
65 TTATAAGGTTGTTAGCTGCCTTTATTTACAGTTTAAA
* *
21409 TAAACTGTTTAATTTGTTGCTACTGTTG
1 TAAACTGTTTAATTTATAGCTACTGTTG
21437 GTTGTTCATT
Statistics
Matches: 207, Mismatches: 19, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
99 89 0.43
102 118 0.57
ACGTcount: A:0.22, C:0.10, G:0.18, T:0.50
Consensus pattern (101 bp):
TAAACTGTTTAATTTATAGCTACTGTTGATTTGTTTGTGTTGTTGTTGTTCATTCGGATTGCTTT
TATAAGGTTGTTAGCTGCCTTTATTTACAGTTTAAA
Found at i:23987 original size:17 final size:17
Alignment explanation
Indices: 23952--23987 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
23942 TTGCTGTTGT
* *
23952 TGCATGTTGTTTCCTGC
1 TGCATGTTGTTTACAGC
23969 TGCATGTTGTTTACAGC
1 TGCATGTTGTTTACAGC
23986 TG
1 TG
23988 TCTGCTGCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.11, C:0.19, G:0.25, T:0.44
Consensus pattern (17 bp):
TGCATGTTGTTTACAGC
Found at i:24591 original size:14 final size:14
Alignment explanation
Indices: 24572--24618 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
24562 ATTTTTTCTT
24572 TATATAAATTAAAC
1 TATATAAATTAAAC
24586 TATAT-AATT----
1 TATATAAATTAAAC
24595 TATATAAATTAAAC
1 TATATAAATTAAAC
*
24609 TATATTAATT
1 TATATAAATT
24619 TTCCTTTTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
9 5 0.19
10 4 0.15
13 4 0.15
14 14 0.52
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (14 bp):
TATATAAATTAAAC
Found at i:24596 original size:23 final size:24
Alignment explanation
Indices: 24570--24619 Score: 93
Period size: 23 Copynumber: 2.1 Consensus size: 24
24560 TTATTTTTTC
24570 TTTATATAAATTAAACTATA-TAA
1 TTTATATAAATTAAACTATATTAA
24593 TTTATATAAATTAAACTATATTAA
1 TTTATATAAATTAAACTATATTAA
24617 TTT
1 TTT
24620 TCCTTTTGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 20 0.77
24 6 0.23
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (24 bp):
TTTATATAAATTAAACTATATTAA
Found at i:24676 original size:9 final size:9
Alignment explanation
Indices: 24664--24695 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
24654 TACATTTAAA
24664 TAATTTTAT
1 TAATTTTAT
24673 TAATTTTAT
1 TAATTTTAT
24682 TAATTTTAT
1 TAATTTTAT
24691 ATAAT
1 -TAAT
24696 AGGTCTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 18 0.82
10 4 0.18
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (9 bp):
TAATTTTAT
Found at i:24897 original size:16 final size:16
Alignment explanation
Indices: 24876--24925 Score: 82
Period size: 16 Copynumber: 3.1 Consensus size: 16
24866 CATTTACAGA
24876 TCAGGTTAAAAACATG
1 TCAGGTTAAAAACATG
*
24892 TCAGGTTAAAAACAAG
1 TCAGGTTAAAAACATG
*
24908 TCAGGTTGAAAACATG
1 TCAGGTTAAAAACATG
24924 TC
1 TC
24926 GGGTAATACC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.42, C:0.14, G:0.20, T:0.24
Consensus pattern (16 bp):
TCAGGTTAAAAACATG
Found at i:25025 original size:31 final size:31
Alignment explanation
Indices: 24946--25026 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 31
24936 AGTTATTTAC
24946 CGGGTCAATCTCGGGTTCGGGTTCATATCAAT
1 CGGGTCAAT-TCGGGTTCGGGTTCATATCAAT
* * **
24978 CGGATGCAGTTCGGGTTCGGGTATCATAT-TTT
1 CGGGT-CAATTCGGGTTCGGGT-TCATATCAAT
25010 CGGGTCAATTCGGGTTC
1 CGGGTCAATTCGGGTTC
25027 AGGTCATTCT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
31 11 0.27
32 21 0.51
33 9 0.22
ACGTcount: A:0.16, C:0.20, G:0.31, T:0.33
Consensus pattern (31 bp):
CGGGTCAATTCGGGTTCGGGTTCATATCAAT
Found at i:29142 original size:23 final size:23
Alignment explanation
Indices: 29112--29182 Score: 81
Period size: 23 Copynumber: 3.1 Consensus size: 23
29102 GTCCCAAAGA
29112 ACCACATAAAATTATCCTGAAGG
1 ACCACATAAAATTATCCTGAAGG
* *
29135 ACCGCATAGAAA-TATCCCGAAGG
1 ACCACATA-AAATTATCCTGAAGG
* * *
29158 ACCACGTAGAATTATCTTGAAGG
1 ACCACATAAAATTATCCTGAAGG
29181 AC
1 AC
29183 TGCGTAGAAC
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
22 2 0.05
23 34 0.87
24 3 0.08
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.20
Consensus pattern (23 bp):
ACCACATAAAATTATCCTGAAGG
Found at i:29171 original size:46 final size:47
Alignment explanation
Indices: 29094--29191 Score: 117
Period size: 46 Copynumber: 2.1 Consensus size: 47
29084 AAGTGCCACG
*
29094 TAGAAATTGTCCCAAAGAACCACATAAAATTATCCTGAAGGACCGCA
1 TAGAAATTATCCCAAAGAACCACATAAAATTATCCTGAAGGACCGCA
* * * * * * *
29141 TAGAAA-TATCCCGAAGGACCACGTAGAATTATCTTGAAGGACTGCG
1 TAGAAATTATCCCAAAGAACCACATAAAATTATCCTGAAGGACCGCA
29187 TAGAA
1 TAGAA
29192 CCCTCGACTC
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
46 37 0.86
47 6 0.14
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.20
Consensus pattern (47 bp):
TAGAAATTATCCCAAAGAACCACATAAAATTATCCTGAAGGACCGCA
Found at i:29188 original size:23 final size:23
Alignment explanation
Indices: 29121--29191 Score: 88
Period size: 23 Copynumber: 3.1 Consensus size: 23
29111 AACCACATAA
*
29121 AATTATCCTGAAGGACCGCATAG
1 AATTATCCTGAAGGACCGCGTAG
* * *
29144 AAATATCCCGAAGGACCACGTAG
1 AATTATCCTGAAGGACCGCGTAG
* *
29167 AATTATCTTGAAGGACTGCGTAG
1 AATTATCCTGAAGGACCGCGTAG
29190 AA
1 AA
29192 CCCTCGACTC
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.21
Consensus pattern (23 bp):
AATTATCCTGAAGGACCGCGTAG
Found at i:32465 original size:34 final size:34
Alignment explanation
Indices: 32426--32527 Score: 204
Period size: 34 Copynumber: 3.0 Consensus size: 34
32416 ATTATAAAAA
32426 TATGGCAGCATCAACATCATGCCTTCAGTTCAAG
1 TATGGCAGCATCAACATCATGCCTTCAGTTCAAG
32460 TATGGCAGCATCAACATCATGCCTTCAGTTCAAG
1 TATGGCAGCATCAACATCATGCCTTCAGTTCAAG
32494 TATGGCAGCATCAACATCATGCCTTCAGTTCAAG
1 TATGGCAGCATCAACATCATGCCTTCAGTTCAAG
32528 GACACATCAA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 68 1.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (34 bp):
TATGGCAGCATCAACATCATGCCTTCAGTTCAAG
Found at i:35125 original size:20 final size:20
Alignment explanation
Indices: 35100--35139 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
35090 TCGAAAGTTG
35100 AGACCTTACTTAGTGCCTTA
1 AGACCTTACTTAGTGCCTTA
35120 AGACCTTACTTAGTGCCTTA
1 AGACCTTACTTAGTGCCTTA
35140 TATATATCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (20 bp):
AGACCTTACTTAGTGCCTTA
Found at i:39982 original size:3 final size:3
Alignment explanation
Indices: 39958--40003 Score: 51
Period size: 3 Copynumber: 16.0 Consensus size: 3
39948 ACACACACAG
* * *
39958 ATA AT- ATA ATA CTA CTA CTA ATA ATA ATA ATA ATA ATA ATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
40004 TCACACTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
2 4 0.10
3 35 0.90
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:40139 original size:22 final size:22
Alignment explanation
Indices: 40111--40157 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
40101 CCTAAAGAAC
*
40111 AAATTTATAATAT-TTAGGGAAT
1 AAATTTATAAAATGTTA-GGAAT
40133 AAATTTATAAAATGTTAGGAAT
1 AAATTTATAAAATGTTAGGAAT
40155 AAA
1 AAA
40158 AATAAATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 20 0.87
23 3 0.13
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (22 bp):
AAATTTATAAAATGTTAGGAAT
Found at i:53590 original size:47 final size:48
Alignment explanation
Indices: 53531--53641 Score: 188
Period size: 47 Copynumber: 2.3 Consensus size: 48
53521 TTTCTATTAT
* *
53531 ATACTTGACCTGGATTTTGATCGGATACTTGACCTGGATT-TGATCGG
1 ATACTTGACCTGGATTCTGATCGAATACTTGACCTGGATTCTGATCGG
*
53578 ATACTTGACCTGGATTCTGATCGAATACTTGACCTGGATTCTGATCTG
1 ATACTTGACCTGGATTCTGATCGAATACTTGACCTGGATTCTGATCGG
53626 ATACTTGACCTGGATT
1 ATACTTGACCTGGATT
53642 ATGTTTTGAT
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
47 38 0.63
48 22 0.37
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.36
Consensus pattern (48 bp):
ATACTTGACCTGGATTCTGATCGAATACTTGACCTGGATTCTGATCGG
Found at i:53651 original size:24 final size:24
Alignment explanation
Indices: 53531--53641 Score: 188
Period size: 24 Copynumber: 4.7 Consensus size: 24
53521 TTTCTATTAT
*
53531 ATACTTGACCTGGATTTTGATCGG
1 ATACTTGACCTGGATTCTGATCGG
53555 ATACTTGACCTGGATT-TGATCGG
1 ATACTTGACCTGGATTCTGATCGG
*
53578 ATACTTGACCTGGATTCTGATCGA
1 ATACTTGACCTGGATTCTGATCGG
*
53602 ATACTTGACCTGGATTCTGATCTG
1 ATACTTGACCTGGATTCTGATCGG
53626 ATACTTGACCTGGATT
1 ATACTTGACCTGGATT
53642 ATGTTTTGAT
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
23 23 0.28
24 60 0.72
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.36
Consensus pattern (24 bp):
ATACTTGACCTGGATTCTGATCGG
Found at i:57457 original size:15 final size:16
Alignment explanation
Indices: 57427--57457 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
57417 ATGAATTTAC
57427 TTGAAATTACCTTGAG
1 TTGAAATTACCTTGAG
57443 TTGAAATTA-CTTGAG
1 TTGAAATTACCTTGAG
57458 ATTTTGGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (16 bp):
TTGAAATTACCTTGAG
Found at i:60943 original size:11 final size:11
Alignment explanation
Indices: 60936--60973 Score: 55
Period size: 10 Copynumber: 3.7 Consensus size: 11
60926 TGTTATTTTC
60936 TATATATTATA
1 TATATATTATA
60947 TATATA-TATA
1 TATATATTATA
60957 TATATA-TATA
1 TATATATTATA
60967 TAT-TATT
1 TATATATT
60974 TTATTTGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 2 0.08
10 18 0.69
11 6 0.23
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
TATATATTATA
Found at i:60948 original size:2 final size:2
Alignment explanation
Indices: 60936--60969 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
60926 TGTTATTTTC
60936 TA TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
60970 TATTTTATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:61009 original size:23 final size:23
Alignment explanation
Indices: 60966--61016 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
60956 ATATATATAT
*
60966 ATATTATTTTATTTGTTTTGTAC
1 ATATTATTTTATTTGTATTGTAC
* *
60989 ATATTTTTTTATTAT-TATTGTAT
1 ATATTATTTTATT-TGTATTGTAC
61012 ATATT
1 ATATT
61017 GTTATATTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 23 0.96
24 1 0.04
ACGTcount: A:0.25, C:0.02, G:0.06, T:0.67
Consensus pattern (23 bp):
ATATTATTTTATTTGTATTGTAC
Found at i:61073 original size:2 final size:2
Alignment explanation
Indices: 61062--61119 Score: 91
Period size: 2 Copynumber: 29.5 Consensus size: 2
61052 TTTTATGTAC
* *
61062 AT AT AT -T AT AT AT AT AT AT CT AT AT AT AG AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
61103 AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT A
61120 CTTTATTGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
1 1 0.02
2 50 0.98
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:62433 original size:11 final size:10
Alignment explanation
Indices: 62417--62446 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
62407 TGCCATTTAT
62417 TTTTTTATTA
1 TTTTTTATTA
62427 TTATTTTATTA
1 TT-TTTTATTA
62438 TTTTTTATT
1 TTTTTTATT
62447 TAACTGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTTTTATTA
Done.