genome.fa.s6212.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006212.1 Hibiscus syriacus cultivar Beakdansim tig00014800_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105454

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
981--1023	19	2.3	19	80	11	52	67	6	18	6	1.37
1607--1641	17	2.0	18	94	5	63	34	0	37	28	1.58
4789--4851	32	2.0	32	87	0	90	34	11	17	36	1.85
5823--5881	2	29.5	2	100	0	118	49	0	0	50	1.00
14103--14246	67	2.1	67	92	0	234	47	21	9	21	1.79
32982--33075	24	3.9	24	87	0	116	26	14	15	42	1.86
32982--33076	48	2.0	48	89	0	145	26	14	16	42	1.87
33552--33595	20	2.1	21	83	4	54	47	4	2	45	1.35
35274--35303	2	15.0	2	100	0	60	50	0	0	50	1.00
35499--35536	14	2.8	14	88	4	51	68	0	0	31	0.90
36091--36170	28	2.9	28	86	3	99	45	13	16	25	1.84
36306--36375	32	2.2	33	82	7	81	37	8	15	38	1.78
36406--36539	63	2.2	60	85	6	171	41	13	12	32	1.82
36769--36836	30	2.3	30	82	5	75	36	11	20	30	1.89
37060--37118	31	1.9	31	89	3	93	40	15	13	30	1.86
37156--37291	36	3.8	35	78	7	132	36	12	19	32	1.89
37183--37247	34	1.9	34	93	0	112	41	10	18	29	1.84
37344--37399	27	2.0	28	93	3	96	46	10	16	26	1.79
37383--37608	106	2.1	107	92	3	384	42	9	15	32	1.79
37649--37731	36	2.3	36	79	10	89	37	6	20	36	1.77
37800--37899	36	2.7	37	84	6	141	34	11	20	35	1.87
38239--38291	4	13.8	4	81	15	67	28	0	24	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39466--39561	11	8.2	11	72	15	68	0	15	8	76	1.02
39454--39592	37	3.7	38	77	17	114	1	16	7	74	1.13
39463--39587	23	5.0	25	71	19	100	0	16	7	75	1.07
39549--39588	15	2.7	15	92	0	62	2	17	7	72	1.19
39465--39592	26	5.2	25	70	21	92	0	15	7	75	1.06
40907--40939	17	2.0	17	88	5	50	36	24	6	33	1.80
41368--41435	32	2.1	33	84	13	88	61	10	11	16	1.56
44057--44096	2	20.0	2	100	0	80	50	0	0	50	1.00
45034--45074	3	14.0	3	89	5	66	63	0	0	36	0.95
45835--45868	15	2.4	14	85	5	50	44	2	44	8	1.50
47083--47325	38	6.5	37	75	13	153	43	4	8	44	1.53
47097--47349	34	6.9	37	76	12	168	43	3	8	44	1.53
47222--47246	12	2.1	12	100	0	50	40	8	8	44	1.63
47152--47364	36	5.8	36	73	14	152	42	5	9	42	1.60
47129--47376	72	3.4	71	80	9	221	43	4	8	43	1.57
47432--47468	3	12.3	3	88	11	58	32	0	0	67	0.91
53733--54665	84	11.2	82	83	4	1032	30	23	20	25	1.98
53787--54671	248	3.5	248	91	1	1313	31	23	20	25	1.98
53724--54736	248	4.1	249	88	2	1277	30	23	20	24	1.98
55320--55562	38	6.5	37	75	13	153	43	4	8	44	1.53
55334--55586	34	6.9	37	76	12	168	43	3	8	44	1.53
55459--55483	12	2.1	12	100	0	50	40	8	8	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55389--55601	36	5.8	36	73	14	152	42	5	9	42	1.60
55366--55613	72	3.4	71	80	9	221	43	4	8	43	1.57
55670--55707	3	12.3	3	94	5	67	31	0	0	68	0.90
59716--59743	10	2.8	10	100	0	56	50	42	0	7	1.30
60764--60802	2	19.5	2	100	0	78	51	0	0	48	1.00
61685--61719	17	2.0	18	88	5	54	60	0	2	37	1.12
62176--62228	22	2.2	24	87	9	74	22	18	41	16	1.90
62804--62834	14	2.2	14	100	0	62	38	29	0	32	1.57
62832--62872	10	4.1	10	84	12	57	31	29	0	39	1.57
62893--62921	14	2.1	14	93	6	51	27	6	0	65	1.18
62996--63216	110	2.0	111	93	0	381	35	8	9	46	1.67
65079--65113	15	2.3	15	90	0	52	40	25	28	5	1.78
67209--67253	21	2.1	21	87	0	63	31	28	24	15	1.96
68582--68682	31	3.2	31	78	8	123	29	18	17	33	1.95
68670--68793	30	4.1	30	93	2	196	20	21	26	30	1.98
71708--71752	21	2.1	21	87	0	63	31	28	24	15	1.96
72226--72277	2	26.5	2	96	3	97	50	0	0	50	1.00
73084--73179	32	3.0	32	73	14	108	30	16	17	35	1.93
73085--73176	31	2.9	32	76	9	98	31	17	18	32	1.94
73170--73293	30	4.1	30	93	2	196	20	21	26	30	1.98
76363--76467	51	2.1	51	89	7	162	31	20	20	27	1.97
76370--76480	49	2.2	51	85	6	147	32	20	19	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76492--76619	51	2.5	51	84	1	150	19	34	30	15	1.93
87957--88004	24	2.0	24	88	8	71	54	10	6	29	1.59
97224--97281	29	2.1	27	81	12	66	58	5	1	34	1.30
97187--97282	35	2.8	34	80	14	92	55	7	2	35	1.40
97473--97844	133	2.8	131	77	7	376	31	16	18	33	1.93
103193--103417	45	5.0	45	86	1	290	27	23	12	37	1.90
103193--103460	135	2.0	136	82	3	326	26	22	11	39	1.87
103497--103648	79	1.9	80	86	4	218	29	22	12	35	1.91
103583--104117	67	8.0	68	85	4	705	31	25	13	30	1.93
103583--104114	200	2.7	200	85	4	718	31	25	12	30	1.93
104329--104528	54	3.6	55	85	7	248	37	19	9	35	1.83
104329--104527	111	1.8	110	84	8	280	37	19	8	35	1.82

Tables:   1

The End!