genome.fa.s6214.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006214.1 Hibiscus syriacus cultivar Beakdansim tig00014805_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76439

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11961--11991	16	1.9	16	93	0	53	35	3	0	61	1.12
19110--19147	15	2.5	15	83	12	51	52	0	31	15	1.43
19111--19150	18	2.2	18	91	8	64	50	0	32	17	1.47
30814--30845	15	2.1	15	100	0	64	65	6	21	6	1.38
34146--34290	71	2.0	71	98	0	281	36	13	20	30	1.90
35243--35289	21	2.2	21	84	0	67	21	21	17	40	1.91
35280--35375	20	4.8	20	83	2	113	37	23	17	20	1.94
35179--35389	20	10.6	20	74	10	103	32	21	15	30	1.94
36135--36169	12	2.9	12	91	0	52	54	31	0	14	1.40
36280--36335	24	2.3	24	84	0	67	28	19	16	35	1.93
36294--36347	24	2.2	24	90	0	81	22	18	18	40	1.91
37334--37370	18	2.1	18	89	0	56	32	5	10	51	1.60
37326--37378	24	2.2	24	86	0	70	35	3	13	47	1.61
38088--38127	14	2.9	14	100	0	80	45	20	0	35	1.51
38039--38178	61	2.2	62	83	7	176	47	17	1	32	1.57
39596--39654	21	2.8	21	73	0	64	30	13	28	27	1.94
41470--41505	14	2.6	14	100	0	72	52	22	0	25	1.47
42146--42196	22	2.3	22	96	0	93	21	13	43	21	1.87
46965--47002	16	2.4	16	82	4	51	63	0	5	31	1.17
46935--46984	21	2.4	21	83	10	66	64	2	4	30	1.23
47657--47756	35	2.8	37	83	6	107	31	15	15	39	1.87
48217--48718	106	4.9	102	78	7	498	22	20	23	33	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48541--48878	160	2.1	160	94	0	595	21	21	24	32	1.98
48737--48926	105	1.8	105	85	0	272	21	21	24	33	1.97
49380--49545	65	2.6	65	92	0	278	36	11	20	31	1.88
49445--49884	102	4.3	102	94	0	756	36	12	20	30	1.89
49510--49919	36	11.9	37	67	18	242	36	12	20	29	1.90
50777--50827	22	2.3	22	93	0	84	27	11	25	35	1.91
51437--51496	20	2.9	21	80	7	61	1	13	6	78	1.02
51453--51505	23	2.4	22	84	6	72	0	15	5	79	0.91
53407--53434	5	5.6	5	100	0	56	82	0	0	17	0.68
54823--54881	21	2.6	22	81	10	66	64	1	5	28	1.24
54853--54890	16	2.4	16	82	4	51	63	0	5	31	1.17
55059--55101	15	2.7	15	85	7	59	62	0	0	37	0.95
55545--55644	35	2.8	36	84	6	121	32	15	15	38	1.88
55801--55843	15	2.8	15	82	3	50	55	0	0	44	0.99
61186--61218	15	2.2	15	100	0	66	33	33	18	15	1.92
61330--61398	24	2.8	26	83	12	85	31	24	5	37	1.79
61363--61398	12	3.0	12	91	0	63	36	25	5	33	1.79
61748--61891	64	2.3	63	85	4	191	25	16	18	39	1.91
61771--61933	64	2.5	64	78	5	179	28	20	17	33	1.95
65081--65136	15	3.0	21	70	29	70	26	19	26	26	1.99
68142--68174	15	2.2	15	100	0	66	33	33	18	15	1.92
68286--68354	24	2.8	26	83	12	85	31	24	5	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68319--68354	12	3.0	12	91	0	63	36	25	5	33	1.79
68662--68883	64	3.5	63	82	5	214	27	18	20	33	1.96
69722--69803	42	2.0	42	82	0	101	36	14	18	30	1.91
69915--69979	23	2.8	23	77	13	62	20	23	24	32	1.98
73954--74073	58	2.1	58	96	0	222	32	21	11	34	1.90

Tables:   1

The End!