genome.fa.s6215.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006215.1 Hibiscus syriacus cultivar Beakdansim tig00014806_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67851

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9574--9623	25	2.2	21	82	13	55	50	2	0	48	1.12
12164--12244	21	3.8	20	70	20	58	20	16	27	35	1.94
12165--12251	44	2.0	44	88	0	129	22	16	26	34	1.95
17303--17342	21	2.0	21	85	5	55	37	15	17	30	1.90
23463--23506	21	2.1	21	86	0	61	27	25	18	29	1.98
28039--28083	20	2.2	20	84	7	56	13	22	0	64	1.28
32878--32939	23	2.7	23	87	0	88	17	27	22	32	1.97
37479--37522	23	1.9	23	86	9	63	52	4	2	40	1.34
37917--37964	20	2.4	20	85	0	60	25	14	16	43	1.86
39010--39049	2	21.0	2	90	10	66	52	0	0	47	1.00
40027--40064	19	2.0	19	89	0	58	42	18	23	15	1.89
45766--45843	38	2.0	39	97	2	149	17	10	12	58	1.61
46011--46108	21	4.7	21	69	15	69	39	18	20	21	1.92
46076--46351	20	13.6	20	72	14	181	38	23	18	20	1.94
46138--46349	41	5.2	41	90	1	320	37	23	18	20	1.94
46910--46988	20	3.9	21	86	5	94	51	17	18	11	1.75
46965--47048	33	2.5	33	92	0	132	47	22	20	9	1.78
47041--47082	19	2.2	19	86	0	57	14	26	19	40	1.89
47048--47139	19	4.7	19	86	5	112	14	21	19	44	1.86
48835--49214	94	4.1	94	95	1	647	21	12	19	47	1.81
49270--49399	19	6.8	19	79	9	122	44	23	17	13	1.85
49432--49520	20	4.4	20	91	0	133	21	17	21	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50004--50108	21	5.0	21	72	3	86	21	37	18	22	1.94
50031--50111	42	1.9	42	82	5	101	22	38	18	20	1.94
51454--51489	14	2.6	14	90	0	54	30	0	22	47	1.52
51591--51666	33	2.3	34	95	2	136	43	19	23	13	1.86
51604--51671	19	3.8	19	72	21	74	45	19	22	13	1.84
51681--51759	33	2.4	34	95	2	142	12	22	18	45	1.84
53351--53499	20	7.3	20	80	3	172	18	18	24	38	1.92
53351--53560	40	5.2	40	82	5	235	18	18	24	39	1.92
53351--53499	41	3.7	40	92	0	235	18	18	24	38	1.92
53511--53560	20	2.5	20	90	6	75	14	18	24	44	1.86
53351--53560	81	2.6	81	77	8	212	18	18	24	39	1.92
55720--55761	22	2.0	21	85	4	57	50	2	2	45	1.27
58289--58329	21	2.0	21	90	0	64	29	21	26	21	1.99
58556--58594	20	2.0	20	95	5	71	25	12	15	46	1.81
59012--59058	21	2.4	19	80	19	60	31	17	27	23	1.96
59017--59071	21	2.6	21	91	0	92	27	23	27	21	1.99
60924--60972	19	2.6	19	96	0	89	42	0	24	32	1.55
62080--62124	20	2.2	20	84	0	63	22	17	11	48	1.78
62441--62503	20	3.4	19	71	24	62	23	33	15	26	1.95

Tables:   1

The End!