Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006217.1 Hibiscus syriacus cultivar Beakdansim tig00014809_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70880

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
517--594
3
26.0
3
77
14
81
30
2
0
66
1.05
1698--1722
2
12.5
2
100
0
50
52
0
0
48
1.00
2170--2195
2
13.0
2
100
0
52
50
0
0
50
1.00
4276--4361
43
2.0
43
86
0
118
30
8
24
37
1.84
4570--4621
15
3.7
15
87
7
74
17
11
13
57
1.64
4570--4621
7
7.4
7
85
10
63
17
11
13
57
1.64
7792--7821
7
4.1
7
91
8
51
73
0
13
13
1.10
7795--7845
8
6.6
8
77
6
52
76
0
15
7
1.00
7792--7844
15
3.5
15
82
7
63
73
0
16
9
1.08
10252--10395
75
1.9
75
90
2
227
35
14
21
28
1.93
10252--10424
75
2.3
75
86
4
224
35
15
21
27
1.93
11738--11792
20
2.6
22
88
5
78
34
14
12
38
1.84
12536--12651
36
3.2
36
70
2
106
29
15
14
40
1.87
12529--12676
73
2.0
73
86
0
206
32
15
12
39
1.85
12833--12895
20
3.2
20
64
28
53
44
9
20
25
1.82
12697--13146
123
3.7
123
91
0
677
40
14
20
24
1.90
12955--13018
20
3.2
20
63
20
53
42
9
23
25
1.84
13540--13626
3
30.3
3
80
13
103
29
1
0
68
0.96
13544--13626
14
5.9
14
79
10
89
30
1
0
68
0.97
14847--14940
31
3.1
32
74
22
87
29
8
2
59
1.39
15317--15351
15
2.4
14
86
9
52
51
0
2
45
1.16
23991--24072
40
2.0
40
95
0
146
32
25
15
25
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31492--31536
21
2.1
21
87
0
63
31
28
24
15
1.96
32422--32595
31
5.6
31
95
0
303
18
20
22
37
1.94
35767--35811
21
2.1
21
87
0
63
31
28
24
15
1.96
36694--36848
31
5.0
31
92
3
251
20
20
23
36
1.95
38097--38151
19
2.7
19
86
11
65
21
30
20
27
1.98
40112--40159
20
2.5
20
77
12
55
16
2
27
54
1.54
45466--45729
132
2.0
132
96
0
492
33
17
15
34
1.91
47128--47158
16
1.9
16
93
0
53
41
0
6
51
1.27
47151--47192
22
1.9
22
85
0
57
26
2
14
57
1.50
48580--48651
29
2.5
29
84
4
92
36
8
16
38
1.79
48733--48807
32
2.4
30
84
6
96
49
8
5
37
1.55
55580--55646
24
2.8
24
79
0
62
71
2
5
19
1.20
55609--55650
16
2.6
16
82
10
50
76
2
2
19
1.01
56403--56461
22
2.7
22
77
12
68
59
1
1
37
1.18
68253--68313
23
2.7
23
89
0
95
26
27
26
19
1.99
68329--68647
103
3.1
103
94
2
572
36
24
12
26
1.91

Tables:   1

The End!