Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006219.1 Hibiscus syriacus cultivar Beakdansim tig00014819_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80145

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--48
12
3.7
12
84
0
61
43
22
15
18
1.88
2615--2652
20
1.9
20
84
10
51
21
0
15
63
1.31
3143--3189
20
2.3
20
88
0
67
36
21
19
23
1.95
3183--3270
40
2.2
40
85
6
124
42
26
12
19
1.86
3194--3289
20
4.8
20
82
3
95
40
23
13
21
1.89
3237--3309
19
3.7
20
85
5
85
35
23
12
28
1.91
3197--3317
40
3.0
40
78
4
111
38
23
13
25
1.91
4276--4329
24
2.2
24
90
0
81
22
18
18
40
1.91
7431--7483
24
2.2
24
86
0
70
33
3
13
49
1.60
8427--8462
18
2.0
18
94
0
63
55
22
2
19
1.56
8653--8691
14
2.9
14
82
17
55
41
30
20
7
1.80
8721--8848
65
2.0
66
93
3
224
50
17
1
30
1.55
9675--9720
21
2.2
20
77
7
56
10
21
47
19
1.80
9919--9960
4
10.5
4
84
0
57
69
2
2
26
1.13
11943--11982
20
2.1
19
85
4
53
50
25
15
10
1.74
11979--12053
20
3.8
20
100
0
150
9
20
21
49
1.76
12420--12469
22
2.4
21
81
15
59
22
12
42
24
1.87
12428--12475
22
2.2
22
92
7
80
18
14
45
20
1.85
12594--12680
20
4.3
20
76
0
84
18
13
24
43
1.86
16360--16391
16
2.0
16
100
0
64
43
12
6
37
1.68
19188--19504
126
2.5
130
77
7
340
28
17
19
33
1.95
20279--20318
16
2.4
17
87
8
55
70
17
2
10
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20505--20547
14
2.9
14
86
6
50
6
18
0
74
1.04
20507--20548
16
2.7
15
85
10
50
7
19
0
73
1.05
21016--21064
3
16.3
3
100
0
98
67
0
0
32
0.91
22104--22128
6
4.2
6
100
0
50
0
0
16
84
0.63
24364--24482
46
2.6
47
82
5
154
36
10
8
44
1.70
25869--25897
14
2.0
15
93
6
51
44
0
0
55
0.99
26222--26313
28
3.3
28
98
0
175
40
35
6
17
1.75
28519--28562
21
2.1
21
100
0
88
47
4
4
43
1.44
29140--29208
24
2.9
23
76
4
66
24
14
13
47
1.79
30323--30376
2
27.0
2
100
0
108
50
0
0
50
1.00
30977--31043
33
2.0
34
97
2
127
19
14
23
41
1.89
35584--35626
21
2.0
21
86
0
59
30
27
25
16
1.97
35606--35758
68
2.2
68
87
2
209
28
27
26
17
1.98
36061--36130
29
2.4
29
90
0
104
37
10
14
38
1.79
36146--36205
30
2.0
31
90
3
95
36
6
23
33
1.81
36425--36491
22
3.0
22
100
0
134
19
26
26
26
1.99
42511--42553
21
2.0
21
86
0
59
30
27
25
16
1.97
42533--42685
68
2.2
68
88
2
218
28
27
27
16
1.97
42988--43057
29
2.4
29
90
0
104
37
10
14
38
1.79
43073--43132
30
2.0
31
90
3
95
36
6
23
33
1.81
43352--43418
22
3.0
22
95
0
125
20
26
25
26
1.99
48249--48337
31
2.8
30
80
8
97
42
1
2
53
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48282--48331
20
2.5
20
78
12
59
40
2
2
56
1.22
48251--48342
11
9.2
10
70
21
52
41
1
2
55
1.19
49639--49741
30
3.4
30
94
0
170
33
24
17
25
1.96
49639--49766
60
2.1
61
85
1
168
34
25
17
23
1.96
50419--50447
7
4.3
7
95
4
51
44
24
0
31
1.54
54034--54136
30
3.4
30
97
0
188
33
24
18
24
1.97
54034--54161
60
2.1
61
88
1
186
34
25
17
22
1.96
54122--54214
31
3.0
31
77
3
89
35
21
16
26
1.94
73310--73346
14
2.6
14
95
0
65
0
29
2
67
1.04
73308--73346
17
2.3
17
91
8
62
0
30
2
66
1.05
73828--73966
64
2.2
62
84
2
170
34
17
21
25
1.96
74691--74846
31
5.0
31
88
3
192
22
17
21
37
1.94
75533--75574
21
2.0
21
90
0
66
28
21
21
28
1.99
79226--79257
15
2.1
15
100
0
64
46
12
15
25
1.81

Tables:   1

The End!