Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000622.1 Hibiscus syriacus cultivar Beakdansim tig00001203_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56984

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
259--292
17
1.9
18
88
5
52
55
5
0
38
1.24
6258--6289
12
2.7
12
95
0
55
56
9
25
9
1.61
17031--17076
19
2.4
19
100
0
92
23
21
26
28
1.99
20013--20238
85
2.7
85
84
6
314
31
19
17
30
1.95
32470--32543
36
2.1
36
100
0
148
50
8
8
33
1.62
38239--38270
16
1.9
17
93
6
57
59
0
37
3
1.13
39412--39452
21
2.0
21
90
0
64
14
0
26
58
1.37
39420--39475
16
3.8
14
78
17
60
8
0
32
58
1.29
41677--41731
20
2.7
21
71
18
53
41
18
9
30
1.81
47550--48686
182
6.3
182
89
1
1554
41
13
17
28
1.86
47559--48686
363
3.1
362
88
1
1577
40
13
17
28
1.87
48256--48294
20
2.0
20
84
0
51
53
15
23
7
1.67
50469--50531
21
3.0
21
97
0
117
41
11
33
14
1.81
50553--50682
66
2.0
67
82
1
163
32
2
43
22
1.66
50784--50820
18
2.1
18
94
0
65
56
0
40
2
1.13
50804--50885
29
2.8
29
86
0
119
54
0
34
10
1.35
52431--52479
19
2.6
19
96
0
89
32
2
10
55
1.45
52743--55082
200
11.8
200
89
3
3381
38
11
15
34
1.84
52743--55031
399
5.8
399
89
3
3356
38
11
15
34
1.84
55323--55352
11
2.7
11
100
0
60
40
36
16
6
1.75

Tables:   1

The End!