Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006220.1 Hibiscus syriacus cultivar Beakdansim tig00014820_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128125

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5213--5246
17
2.1
16
88
5
50
58
5
20
14
1.57
6789--6813
12
2.1
12
100
0
50
28
16
16
40
1.89
20975--21031
28
2.0
28
83
6
71
21
8
8
61
1.52
21381--21411
2
15.5
2
100
0
62
51
0
0
48
1.00
25580--25608
15
1.9
15
100
0
58
27
13
6
51
1.66
25595--25642
22
2.2
22
96
0
87
25
16
6
52
1.67
33217--33253
18
2.1
18
89
0
56
27
16
5
51
1.66
33809--34092
122
2.3
123
90
1
435
41
13
20
24
1.88
34045--34144
50
2.0
52
88
7
152
41
12
22
25
1.88
34384--34425
16
2.6
16
85
14
68
45
19
19
16
1.86
42562--42620
31
1.9
31
92
0
100
40
6
10
42
1.65
42684--43360
32
21.5
32
68
23
295
52
11
0
35
1.40
42636--42957
54
5.8
54
73
14
212
52
10
0
35
1.41
42747--42789
22
2.0
22
95
0
77
51
11
0
37
1.39
42749--42797
22
2.2
22
85
3
62
55
12
0
32
1.37
42887--42929
22
2.0
22
95
0
77
48
9
2
39
1.48
42889--42937
22
2.2
22
85
3
62
53
10
2
34
1.47
42943--43017
22
3.2
23
71
17
73
54
14
0
30
1.41
42806--43360
166
3.4
163
80
13
614
52
12
0
34
1.41
42972--43375
54
7.5
53
77
16
404
52
11
0
35
1.38
43085--43177
22
4.0
22
77
10
105
50
13
0
35
1.42
43053--43334
102
2.8
98
83
7
377
52
12
0
34
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43218--43277
22
2.7
22
92
0
102
53
10
0
36
1.35
43190--43286
22
4.2
22
77
9
70
54
14
0
30
1.40
43291--43339
22
2.2
22
85
3
62
55
12
0
32
1.37
43308--43445
30
4.4
31
78
15
133
50
4
0
45
1.21
43363--43422
15
4.0
15
91
0
93
48
0
0
51
1.00
47480--47517
13
2.9
13
96
0
67
63
0
0
36
0.95
52615--52658
2
22.0
2
100
0
88
50
0
0
50
1.00
57635--57667
17
1.9
17
93
0
57
6
12
9
72
1.26
58287--58331
19
2.4
19
92
3
74
11
13
8
66
1.44
61702--62577
165
5.3
164
80
5
937
29
26
20
23
1.99
61702--62567
84
10.5
83
76
6
771
29
26
20
23
1.99
61661--62567
249
3.7
246
87
2
1137
29
26
20
23
1.99
64641--64701
12
5.2
11
75
11
50
21
3
1
73
1.06
64641--64704
27
2.6
23
80
14
65
21
3
1
73
1.06
86421--86454
17
2.1
16
88
5
50
76
0
8
14
1.01
86929--86975
24
2.0
24
83
8
60
57
12
2
27
1.47
91893--91926
17
2.1
16
88
5
50
76
0
8
14
1.01
92401--92447
24
2.0
24
83
8
60
57
12
2
27
1.47
95742--95785
20
2.2
20
84
4
63
65
0
15
18
1.27
100603--100644
19
2.2
19
91
0
66
0
14
35
50
1.43
100614--100659
23
2.0
24
95
4
85
0
15
36
47
1.45
103032--103078
24
2.0
24
83
8
60
57
12
2
27
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
114517--114563
20
2.3
20
85
7
60
36
8
19
36
1.82

Tables:   1

The End!