Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006222.1 Hibiscus syriacus cultivar Beakdansim tig00014825_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65527

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
471--507
19
1.9
19
94
0
65
29
18
29
21
1.97
497--558
20
3.0
22
72
18
78
19
17
24
38
1.93
425--558
39
3.4
40
79
11
143
24
16
23
35
1.95
583--637
21
2.7
20
83
8
74
38
18
25
18
1.93
3480--3560
33
2.5
33
84
13
105
49
0
8
41
1.33
5356--5386
14
2.2
14
100
0
62
25
0
22
51
1.48
5780--5880
45
2.3
43
79
14
111
39
3
7
48
1.51
6154--6182
15
1.9
15
100
0
58
34
0
10
55
1.34
6167--6227
24
2.8
21
71
22
52
36
3
9
50
1.52
6198--6242
21
2.1
22
84
12
58
37
2
8
51
1.46
6132--6262
60
2.2
60
91
1
219
38
4
9
48
1.56
6233--6324
24
3.8
24
80
5
96
44
6
7
41
1.59
6174--6328
11
13.2
11
68
18
73
42
5
8
43
1.59
6561--6604
21
2.1
21
82
0
52
18
43
9
29
1.80
7564--7588
2
12.5
2
100
0
50
52
0
0
48
1.00
7904--7954
19
2.7
19
96
0
93
13
35
25
25
1.93
9467--9498
16
2.0
16
93
0
55
46
18
0
34
1.49
14888--14962
38
2.0
37
82
10
91
48
4
1
46
1.29
15259--15284
6
4.3
6
100
0
52
53
30
15
0
1.42
22526--22571
24
1.9
24
100
0
92
26
13
8
52
1.69
23128--23160
3
11.3
3
90
6
50
36
0
0
63
0.95
37978--38069
29
3.2
28
78
9
96
38
9
2
50
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37983--38066
28
3.0
28
82
1
105
36
9
1
52
1.42
38260--38294
18
1.9
18
94
0
61
40
8
2
48
1.49
38728--38766
20
2.0
20
89
0
60
53
2
0
43
1.14
39637--39728
29
3.2
28
78
9
96
38
9
2
50
1.48
39642--39725
28
3.0
28
82
1
105
36
9
1
52
1.42
40369--40407
20
2.0
20
89
0
60
53
2
0
43
1.14
47808--47856
21
2.6
17
84
15
53
20
20
30
28
1.98
59747--59806
30
2.0
30
87
3
86
30
25
20
25
1.99
59991--60036
20
2.2
21
88
3
67
56
13
0
30
1.37
62477--62603
29
4.1
31
65
28
67
34
4
6
54
1.47
63082--63119
19
2.0
19
89
0
58
57
2
0
39
1.12

Tables:   1

The End!