Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006223.1 Hibiscus syriacus cultivar Beakdansim tig00014832_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56683

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
733--774
19
2.2
19
86
0
57
47
7
19
26
1.74
4290--4452
30
5.4
30
99
0
317
23
19
23
32
1.98
5316--5428
29
3.9
29
98
0
217
11
33
34
20
1.88
9844--9945
24
4.2
24
72
5
80
22
13
16
47
1.82
18559--18638
36
2.2
36
91
2
126
32
5
17
45
1.70
19440--19487
4
13.5
4
95
4
54
27
0
0
72
0.84
19441--19532
12
8.5
11
77
20
79
32
0
0
67
0.91
19461--19533
3
24.0
3
86
13
105
35
0
0
64
0.94
20846--20910
12
5.2
12
74
20
53
27
4
1
66
1.20
20868--20910
3
14.3
3
80
9
52
25
4
0
69
1.07
20873--20910
16
2.5
15
91
4
58
23
5
0
71
1.07
20868--20910
13
3.1
15
77
16
56
25
4
0
69
1.07
20911--20952
2
21.0
2
95
0
75
52
0
0
47
1.00
23364--23402
14
2.8
14
88
0
60
28
12
5
53
1.60
26394--26427
2
17.0
2
100
0
68
50
0
0
50
1.00
26725--26833
8
13.4
8
78
12
98
83
0
12
2
0.80
26748--26833
1
86.0
1
74
0
64
86
1
9
3
0.75
26730--26833
9
11.6
9
79
12
101
84
0
11
2
0.78
26759--26799
22
1.9
22
95
5
75
82
0
9
7
0.83
26729--26833
15
6.7
15
78
9
95
83
0
12
2
0.80
27439--27500
32
1.9
32
96
0
115
43
19
17
19
1.88
29112--29328
114
1.9
114
93
0
371
34
16
20
29
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31401--31554
54
2.9
54
93
2
265
35
15
25
22
1.94
32362--34049
113
14.9
113
90
1
2551
38
13
18
29
1.89
34093--34151
17
3.4
17
68
25
50
47
13
23
15
1.81
34399--34477
3
26.0
3
89
7
88
41
0
0
58
0.98
35836--35867
17
1.9
16
93
6
55
65
0
0
34
0.93
35922--36131
109
1.9
109
81
5
255
37
9
9
44
1.69
43452--43485
17
2.1
16
88
5
50
58
5
20
14
1.57
45038--45062
12
2.1
12
100
0
50
28
16
16
40
1.89

Tables:   1

The End!