genome.fa.s6224.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006224.1 Hibiscus syriacus cultivar Beakdansim tig00014834_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77066

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--400	198	2.1	190	90	5	613	31	17	13	38	1.88
516--561	19	2.4	19	96	0	83	54	10	2	32	1.47
2333--2398	33	2.0	33	87	0	96	22	46	0	30	1.52
2432--2495	21	3.1	20	84	4	74	17	31	9	42	1.81
2435--2495	20	3.0	21	85	4	79	18	29	9	42	1.82
4689--4731	20	2.3	18	85	14	61	20	16	11	51	1.75
4694--4740	20	2.4	19	82	10	67	19	17	10	53	1.72
4871--4917	20	2.3	20	89	10	78	17	19	8	55	1.67
4661--5131	177	2.6	176	87	5	649	26	17	14	41	1.87
7927--7979	21	2.5	21	81	6	72	20	26	18	33	1.96
7969--8016	20	2.3	20	85	3	60	39	16	20	22	1.92
8018--8143	20	6.2	20	85	5	128	30	26	19	23	1.98
8006--8118	41	2.8	42	83	4	124	31	26	18	23	1.97
8050--8143	40	2.3	40	88	0	152	26	27	20	25	1.99
8689--8743	19	2.8	20	83	5	76	43	20	21	14	1.87
8761--8812	14	3.2	16	70	24	54	11	21	19	48	1.80
10391--10479	42	2.2	40	86	7	128	21	15	41	21	1.90
10415--10475	21	2.9	21	73	9	70	21	13	42	22	1.87
10816--10854	20	2.0	20	89	0	60	35	25	12	25	1.92
10842--10928	20	4.4	20	85	7	115	39	24	22	13	1.91
10901--10958	19	3.3	18	75	22	61	46	27	17	8	1.77
10954--11050	19	5.6	19	71	22	97	12	19	21	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10976--11034	14	3.9	14	76	20	64	10	16	23	49	1.77
10959--11050	33	2.8	33	98	0	175	11	18	21	47	1.80
11035--11078	20	2.3	19	84	11	54	20	25	18	36	1.95
11624--11671	18	2.7	18	93	0	87	14	12	45	27	1.81
12991--13049	20	3.0	20	87	0	73	42	22	18	16	1.89
13298--13341	22	2.0	22	95	0	79	18	15	45	20	1.85
13529--13601	20	3.7	20	90	0	119	26	19	27	27	1.99
13656--13705	21	2.4	22	76	6	59	38	18	24	20	1.93
14042--14066	7	3.6	7	100	0	50	76	0	24	0	0.80
16824--16891	29	2.4	28	88	11	102	48	14	0	36	1.44
16844--16890	15	3.2	15	77	17	62	51	14	0	34	1.43
17956--18006	21	2.4	22	80	9	61	60	1	7	29	1.36
21379--21571	30	6.4	30	95	0	350	34	23	18	23	1.96
21379--21596	90	2.4	90	93	0	328	35	24	17	22	1.95
21823--21847	4	6.2	4	100	0	50	48	24	0	28	1.52
22004--22036	2	17.0	2	93	6	59	51	0	0	48	1.00
25598--25964	117	3.1	117	85	5	472	22	21	23	32	1.98
26208--26468	63	4.0	63	77	10	283	37	2	22	36	1.69
26307--26536	70	3.4	70	72	11	244	36	5	23	34	1.78
26244--26536	133	2.2	133	91	1	471	36	4	23	35	1.76
26534--26560	14	1.9	14	100	0	54	29	3	14	51	1.60
27237--27288	21	2.5	21	81	12	70	23	26	32	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27251--27354	42	2.5	42	82	3	111	25	18	34	21	1.96
28698--28757	26	2.3	27	81	13	72	55	1	1	41	1.20
28874--28927	19	2.9	19	97	2	101	64	9	3	22	1.38
29220--29362	60	2.4	61	84	5	191	23	37	24	15	1.93
32047--32113	2	33.5	2	100	0	134	50	0	0	49	1.00
32861--32900	21	2.0	21	85	5	55	42	7	2	47	1.45
36882--37243	178	2.0	178	100	0	724	28	22	20	28	1.98
38874--38945	37	2.0	36	83	8	92	16	6	19	56	1.62
38992--39071	23	3.5	23	98	0	151	26	26	15	32	1.95
39084--39175	22	4.2	22	71	15	64	21	9	13	55	1.66
43469--43626	21	7.8	20	71	7	77	39	24	17	18	1.92
43594--43822	20	11.4	20	80	5	221	37	25	17	19	1.94
44515--44561	24	2.0	24	87	8	69	25	14	21	38	1.92
44736--44760	12	2.1	12	100	0	50	72	0	28	0	0.86
45457--45495	18	2.2	18	100	0	78	15	10	17	56	1.66
47075--47308	72	3.3	72	81	8	286	47	17	21	13	1.82
47061--47330	105	2.6	103	91	7	386	46	17	22	13	1.83
47061--47330	53	5.1	52	89	8	406	46	17	22	13	1.83
47075--47336	19	14.7	19	79	17	303	46	17	22	14	1.84
47042--47335	72	4.2	68	78	13	267	45	18	22	13	1.84
47345--47390	18	2.4	20	92	7	78	15	19	17	47	1.82
47502--47537	14	2.6	14	86	4	56	47	22	0	30	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48908--49035	21	6.7	20	80	12	128	47	17	23	11	1.80
48906--48991	21	4.1	21	86	3	129	48	13	25	11	1.77
48906--49040	19	7.1	19	77	12	109	46	17	24	11	1.81
49067--49136	21	3.3	21	73	15	72	17	17	18	47	1.83
49216--49286	33	2.2	33	94	0	124	47	16	23	11	1.79
49666--49858	20	9.6	20	83	5	228	19	19	26	34	1.96
58748--58812	30	2.2	30	88	0	94	24	32	26	16	1.96
58819--58856	20	1.9	20	100	0	76	21	26	26	26	1.99
74093--74123	15	2.1	15	93	0	53	9	41	9	38	1.71

Tables:   1

The End!