genome.fa.s6225.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006225.1 Hibiscus syriacus cultivar Beakdansim tig00014836_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157934

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7991--8023	16	2.1	16	88	5	50	66	0	0	33	0.92
13846--13978	59	2.2	60	82	5	171	37	15	12	35	1.84
17565--17695	69	1.9	69	87	7	194	33	15	12	38	1.84
21225--21303	18	4.4	18	70	9	54	26	21	26	25	1.99
21924--21974	18	2.9	17	74	5	57	52	5	3	37	1.44
28175--28219	23	2.0	23	81	0	54	28	28	22	20	1.98
28198--28501	149	2.0	149	96	0	554	36	19	15	27	1.93
28977--29017	21	2.0	21	90	0	64	9	36	31	21	1.86
28978--29129	67	2.3	67	95	1	268	15	26	28	29	1.96
31111--31199	31	2.9	31	83	3	90	65	13	2	19	1.37
31190--31301	4	27.0	4	68	13	66	63	3	5	27	1.33
31190--31266	31	2.5	30	85	8	93	64	2	5	27	1.27
31214--31300	31	2.7	32	82	8	88	64	2	5	27	1.28
31190--31301	27	4.3	27	75	8	106	63	3	5	27	1.33
31678--31706	2	14.5	2	100	0	58	51	0	0	48	1.00
32258--32336	38	2.1	38	82	0	95	48	0	0	51	1.00
34594--34716	60	2.0	60	81	3	140	33	16	5	44	1.71
45651--45714	32	2.0	32	84	6	85	29	6	23	40	1.79
46009--46067	20	3.0	20	79	0	73	32	25	13	28	1.94
46174--46218	20	2.2	20	80	0	54	26	24	13	35	1.92
53330--53369	18	2.3	18	86	4	55	50	10	0	40	1.36
57094--57169	29	2.6	29	93	0	125	23	27	32	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57703--57758	24	2.3	24	96	0	103	32	19	8	39	1.83
58919--58948	2	15.5	2	93	6	53	50	0	0	50	1.00
62109--62143	2	17.5	2	100	0	70	51	0	0	48	1.00
83574--83958	198	1.9	199	86	0	538	36	18	14	30	1.90
90227--90251	2	12.5	2	100	0	50	48	0	0	52	1.00
90721--90781	31	2.0	31	86	0	86	47	4	3	44	1.41
94774--94881	31	3.6	30	76	10	105	42	8	9	39	1.67
98595--98638	21	2.1	21	86	0	61	29	27	27	15	1.96
98665--98709	22	2.0	22	86	4	63	31	33	26	8	1.87
99950--99993	12	3.8	12	90	3	63	11	9	47	31	1.71
99948--99993	24	2.0	24	91	4	76	10	10	47	30	1.73
100544--100579	18	2.0	18	94	0	63	13	19	33	33	1.91
100441--100925	121	4.0	121	97	0	898	25	14	24	35	1.94
100665--100700	18	2.0	18	100	0	72	11	22	33	33	1.89
100786--100821	18	2.0	18	100	0	72	11	22	33	33	1.89
100932--100992	23	2.7	23	92	0	104	19	24	27	27	1.99
107594--107630	18	1.9	19	89	10	58	51	0	2	45	1.15
113494--113566	35	2.1	35	94	0	128	41	21	12	24	1.88
117770--117943	85	2.0	85	83	2	215	31	14	14	39	1.87
127618--127669	3	17.3	3	83	0	68	30	3	1	63	1.23
135192--135243	17	3.2	17	75	10	54	32	3	13	50	1.60
146000--146030	16	1.9	16	100	0	62	25	32	9	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147636--147673	2	19.0	2	94	0	67	47	2	0	50	1.15
150133--150166	2	18.0	2	88	11	54	47	0	0	52	1.00
152411--152461	24	2.1	24	82	13	61	23	0	1	74	0.92
152412--152465	16	3.4	16	71	21	51	24	0	1	74	0.92
152411--152470	12	4.8	12	78	13	52	26	0	1	71	0.95
154116--154156	21	2.0	21	85	0	55	26	29	19	24	1.98
154686--154747	14	4.5	14	78	11	65	20	0	12	66	1.25
154718--154788	23	3.1	23	78	13	76	21	1	9	67	1.27
156226--156292	31	2.2	31	81	5	82	44	5	5	43	1.53

Tables:   1

The End!