Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006226.1 Hibiscus syriacus cultivar Beakdansim tig00014839_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70658
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Found at i:3504 original size:16 final size:17
Alignment explanation
Indices: 3483--3516 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
3473 ATGAATACAG
*
3483 ACAAGATA-AATAGAAA
1 ACAAGATACAAAAGAAA
3499 ACAAGATACAAAAGAAA
1 ACAAGATACAAAAGAAA
3516 A
1 A
3517 TTCTCTAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.71, C:0.09, G:0.12, T:0.09
Consensus pattern (17 bp):
ACAAGATACAAAAGAAA
Found at i:4174 original size:37 final size:35
Alignment explanation
Indices: 4117--4198 Score: 121
Period size: 37 Copynumber: 2.3 Consensus size: 35
4107 ATCCCATTAT
4117 TATTTTTC-AACAAACATTTACCAAACTTTGAAAAAC
1 TATTTTTCAAACAAACATTTACCAAACTTTG--AAAC
*
4153 TATTTTTCAAATAAACATTTACCAAACTTTGAAAC
1 TATTTTTCAAACAAACATTTACCAAACTTTGAAAC
*
4188 CATTTTTCAAA
1 TATTTTTCAAA
4199 GTTATTACCA
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
35 14 0.33
36 8 0.19
37 21 0.49
ACGTcount: A:0.43, C:0.18, G:0.02, T:0.37
Consensus pattern (35 bp):
TATTTTTCAAACAAACATTTACCAAACTTTGAAAC
Found at i:10336 original size:22 final size:21
Alignment explanation
Indices: 10301--10343 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
10291 TGAATGTATG
* *
10301 TTTAAAAATTATATTTAAATA
1 TTTAAAAATAATATCTAAATA
10322 TTTAAAAAGTAATATCTAAATA
1 TTTAAAAA-TAATATCTAAATA
10344 ATGTTAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (21 bp):
TTTAAAAATAATATCTAAATA
Found at i:12703 original size:12 final size:10
Alignment explanation
Indices: 12662--12702 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
12652 TTTATCACAC
12662 CAAATTCTCT
1 CAAATTCTCT
12672 CAAATTCTCT
1 CAAATTCTCT
12682 -AAATTTCTCT
1 CAAA-TTCTCT
*
12692 CAAATACTCT
1 CAAATTCTCT
12702 C
1 C
12703 TTTTTAAGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 3 0.11
10 22 0.79
11 3 0.11
ACGTcount: A:0.32, C:0.29, G:0.00, T:0.39
Consensus pattern (10 bp):
CAAATTCTCT
Found at i:18528 original size:20 final size:21
Alignment explanation
Indices: 18491--18530 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
18481 AAATTAAGTT
18491 AAATGAATTTTAAGATTTTAC
1 AAATGAATTTTAAGATTTTAC
18512 AAATG-ATTTTACA-ATTTTA
1 AAATGAATTTTA-AGATTTTA
18531 TATTCGATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.42, C:0.05, G:0.07, T:0.45
Consensus pattern (21 bp):
AAATGAATTTTAAGATTTTAC
Found at i:39327 original size:21 final size:21
Alignment explanation
Indices: 39285--39328 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
39275 ACCCCGGGAG
*
39285 CTAGTTCTTCACGAGCTGCTC
1 CTAGTTCTTCACGAGCTCCTC
* *
39306 CTAGTTCTTCTCGCGCTCCTC
1 CTAGTTCTTCACGAGCTCCTC
39327 CT
1 CT
39329 CCTCCTCCAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.09, C:0.39, G:0.16, T:0.36
Consensus pattern (21 bp):
CTAGTTCTTCACGAGCTCCTC
Found at i:40104 original size:12 final size:12
Alignment explanation
Indices: 40087--40120 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
40077 TGAATTTTAA
40087 GATTTTACAAAT
1 GATTTTACAAAT
40099 GATTTTACAAAT
1 GATTTTACAAAT
40111 GATTTTACAA
1 GATTTTACAA
40121 TTTTATATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (12 bp):
GATTTTACAAAT
Found at i:51454 original size:434 final size:435
Alignment explanation
Indices: 50645--51516 Score: 1575
Period size: 434 Copynumber: 2.0 Consensus size: 435
50635 AACAACCAGT
*
50645 GAAATCAATATGTTTATTGTGAAAAATTGAACCACATGACTAAATGTGTCCATAAAATCATAACA
1 GAAATCAATATGTTTATTGTGAAAAATTGAACCACAAGACTAAATGTGTCCATAAAATCATAACA
*
50710 TGGTATCTGAGAATACCTCTTGGCAACCAGTCTAGCTTTCAACCTTTTTACTGAGCCATCAACAC
66 TGGTATATGAGAATACCTCTTGGCAACCAGTCTAGCTTTCAACCTTTTTACTGAGCCATCAACAC
*
50775 TCTTCTTCACCTTGAAGAGCCATTTGCAGCAAATGGATTTTCCACCAGCTGGTAGCTCCACAATG
131 TCTTCTTCACCTTGAAGAGCCATTTGCAACAAATGGATTTTCCACCAGCTGGTAGCTCCACAATG
* * *
50840 TCACATGTGTTATTACTAATAAGAGCATTGTATTCAGCCATAACAGTCATCTTCTAGTCATCATC
196 TCACATATGTTATTACTAATAAGAGCATTGTATTCAGCCATAACAATCATCTTCCAGTCATCATC
50905 TTTAAAAGCAACTCGAATATTACCAGGCACTTCTTTGCATTGAACCAAGTAGATTTTTGGCTTAA
261 TTTAAAAGCAACTCGAATATTACCAGGCACTTCTTTGCATTGAACCAAGTAGATTTTTGGCTTAA
*
50970 AAATCCCATGCTTGCTTCGCGTTGTCATAGGATGAGTGTTGCTCATTCTAGCATCTGGAACAATT
326 AAATCCCATGCTTGCTTCGAGTTGTCATAGGATGAGTGTTGCTCATTCTAGCATCTGGAACAATT
*
51035 TCTTGACTTTGAACTTGCTCACTAGAGACAAACTGTTCATACTGA
391 TCTTGACTTTGAACTTACTCACTAGAGACAAACTGTTCATACTGA
*
51080 GAAATCAGTATGTTTATTGTGAAAAATTGAACCACAAGACTAAATGTGTCCATAAAATCATAACA
1 GAAATCAATATGTTTATTGTGAAAAATTGAACCACAAGACTAAATGTGTCCATAAAATCATAACA
* *
51145 TGGTATATGAGAATACCTCTTGGCAACCAGTCTAGCTTTCAACC-TTTTACTGAGCCATCATCAT
66 TGGTATATGAGAATACCTCTTGGCAACCAGTCTAGCTTTCAACCTTTTTACTGAGCCATCAACAC
*
51209 TCTTCTTCACCTTGAAGAGCCATTTGCAACAAATGGATTTTCTACCAGCTGGTAGCTCCACAATG
131 TCTTCTTCACCTTGAAGAGCCATTTGCAACAAATGGATTTTCCACCAGCTGGTAGCTCCACAATG
* **
51274 TCCCATATGTTATTGTTAATAAGAGCATTGTATTCAGCCATAACAATCATCTTCCAGTCATCATC
196 TCACATATGTTATTACTAATAAGAGCATTGTATTCAGCCATAACAATCATCTTCCAGTCATCATC
* *
51339 TTTAAAAGCAGCTCGAATATTACTAGGCACTTCTTTGCATTGAACCAAGTAGATTTTTGGCTTAA
261 TTTAAAAGCAACTCGAATATTACCAGGCACTTCTTTGCATTGAACCAAGTAGATTTTTGGCTTAA
51404 AAATCCCATGCTTGCTTCGAGTTGTCATAGGATGAGTGTTGCTCATTCTAGCATCTGGAACAATT
326 AAATCCCATGCTTGCTTCGAGTTGTCATAGGATGAGTGTTGCTCATTCTAGCATCTGGAACAATT
*
51469 TCTTGACTTTGAACTTACTCACTAGAGACAAACTGTTCATGCTGA
391 TCTTGACTTTGAACTTACTCACTAGAGACAAACTGTTCATACTGA
51514 GAA
1 GAA
51517 GAGGCATTAG
Statistics
Matches: 419, Mismatches: 18, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
434 313 0.75
435 106 0.25
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32
Consensus pattern (435 bp):
GAAATCAATATGTTTATTGTGAAAAATTGAACCACAAGACTAAATGTGTCCATAAAATCATAACA
TGGTATATGAGAATACCTCTTGGCAACCAGTCTAGCTTTCAACCTTTTTACTGAGCCATCAACAC
TCTTCTTCACCTTGAAGAGCCATTTGCAACAAATGGATTTTCCACCAGCTGGTAGCTCCACAATG
TCACATATGTTATTACTAATAAGAGCATTGTATTCAGCCATAACAATCATCTTCCAGTCATCATC
TTTAAAAGCAACTCGAATATTACCAGGCACTTCTTTGCATTGAACCAAGTAGATTTTTGGCTTAA
AAATCCCATGCTTGCTTCGAGTTGTCATAGGATGAGTGTTGCTCATTCTAGCATCTGGAACAATT
TCTTGACTTTGAACTTACTCACTAGAGACAAACTGTTCATACTGA
Found at i:52154 original size:24 final size:24
Alignment explanation
Indices: 52127--52178 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
52117 GTTAAGGCAA
*
52127 TTTCTACTATATGCATGTGTTTTC
1 TTTCTACTATATGCATGTGTTTCC
52151 TTTCTACTATATGCATGTGTTTCC
1 TTTCTACTATATGCATGTGTTTCC
52175 TTTC
1 TTTC
52179 CACCACCCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.15, C:0.19, G:0.12, T:0.54
Consensus pattern (24 bp):
TTTCTACTATATGCATGTGTTTCC
Found at i:54228 original size:12 final size:14
Alignment explanation
Indices: 54201--54232 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
54191 TGAAAACTTA
54201 TCTCCTTGCATTCT
1 TCTCCTTGCATTCT
54215 TCTCCTT-C-TTCT
1 TCTCCTTGCATTCT
54227 TCTCCT
1 TCTCCT
54233 CGTAAGTCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 10 0.56
13 1 0.06
14 7 0.39
ACGTcount: A:0.03, C:0.41, G:0.03, T:0.53
Consensus pattern (14 bp):
TCTCCTTGCATTCT
Found at i:54836 original size:30 final size:31
Alignment explanation
Indices: 54780--54838 Score: 84
Period size: 32 Copynumber: 1.9 Consensus size: 31
54770 TTACCTATAT
54780 CTTTTGGGACATATAAACATAATTACCTAGGC
1 CTTTTGGGACATATAAACA-AATTACCTAGGC
**
54812 CTTTTGGGACATATGGAC-AATTACCTA
1 CTTTTGGGACATATAAACAAATTACCTA
54839 TGTTCTTGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 9 0.36
32 16 0.64
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (31 bp):
CTTTTGGGACATATAAACAAATTACCTAGGC
Found at i:56941 original size:44 final size:41
Alignment explanation
Indices: 56864--56945 Score: 119
Period size: 44 Copynumber: 1.9 Consensus size: 41
56854 GCAACGCGAT
* *
56864 TTTGAAAAATGTGTTGCGATAGTTAAAATGTGTTGCGAGAG
1 TTTGAAAAATGTGTTGCGATAGTGAAAAAGTGTTGCGAGAG
56905 TTTGAAAAACGTGTTGTTGCGATAGTGAAAAAGTGTTGCGA
1 TTTGAAAAA--TG-TGTTGCGATAGTGAAAAAGTGTTGCGA
56946 TAGTGAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
41 9 0.25
43 2 0.06
44 25 0.69
ACGTcount: A:0.32, C:0.06, G:0.29, T:0.33
Consensus pattern (41 bp):
TTTGAAAAATGTGTTGCGATAGTGAAAAAGTGTTGCGAGAG
Found at i:56955 original size:19 final size:20
Alignment explanation
Indices: 56866--56956 Score: 105
Period size: 19 Copynumber: 4.4 Consensus size: 20
56856 AACGCGATTT
56866 TGAAAAATGTGTTGCGATAG
1 TGAAAAATGTGTTGCGATAG
* *
56886 T-TAAAATGTGTTGCGAGAG
1 TGAAAAATGTGTTGCGATAG
56905 TTTGAAAAACGTGTTGTTGCGATAG
1 --TGAAAAA--TG-TGTTGCGATAG
56930 TGAAAAA-GTGTTGCGATAG
1 TGAAAAATGTGTTGCGATAG
56949 TGAAAAAT
1 TGAAAAAT
56957 CCAAAATAAG
Statistics
Matches: 60, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
19 34 0.57
20 2 0.03
21 1 0.02
22 4 0.07
23 7 0.12
24 2 0.03
25 10 0.17
ACGTcount: A:0.35, C:0.05, G:0.29, T:0.31
Consensus pattern (20 bp):
TGAAAAATGTGTTGCGATAG
Found at i:57102 original size:65 final size:65
Alignment explanation
Indices: 56998--57175 Score: 338
Period size: 65 Copynumber: 2.7 Consensus size: 65
56988 ATTCACGTGG
56998 AGTTTGAAACAATAAAGAATGTGTTGCGATAGTGTAAAAGATTCCCAAGCCATTTGTAAGATCTT
1 AGTTTGAAACAATAAAGAATGTGTTGCGATAGTGTAAAAGATTCCCAAGCCATTTGTAAGATCTT
*
57063 AGTTTGAAACAATAAAGAATGTGTTGCGATAGTGTAAAAGATTCACAAGCCATTTGTAAGATCTT
1 AGTTTGAAACAATAAAGAATGTGTTGCGATAGTGTAAAAGATTCCCAAGCCATTTGTAAGATCTT
*
57128 AGTTTGAAACAATTAAGAATGTGTTGCGATAGTGTAAAAGATTCCCAA
1 AGTTTGAAACAATAAAGAATGTGTTGCGATAGTGTAAAAGATTCCCAA
57176 TTGTTGGCAA
Statistics
Matches: 110, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 110 1.00
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.30
Consensus pattern (65 bp):
AGTTTGAAACAATAAAGAATGTGTTGCGATAGTGTAAAAGATTCCCAAGCCATTTGTAAGATCTT
Found at i:57458 original size:21 final size:21
Alignment explanation
Indices: 57434--57522 Score: 110
Period size: 21 Copynumber: 4.3 Consensus size: 21
57424 ATTTTGGAAA
*
57434 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTGGACT
* *
57455 ATCGCAACGTGAACTTTGACT
1 ATCGCAACGCGAACTTGGACT
* **
57476 ATCGCAA--CGAATTTGGAAA
1 ATCGCAACGCGAACTTGGACT
57495 ATCGCAACGCGAACTTGGACT
1 ATCGCAACGCGAACTTGGACT
57516 ATCGCAA
1 ATCGCAA
57523 AATCGCGTTG
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
19 14 0.25
21 42 0.75
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (21 bp):
ATCGCAACGCGAACTTGGACT
Found at i:60096 original size:24 final size:24
Alignment explanation
Indices: 60069--60173 Score: 138
Period size: 24 Copynumber: 4.4 Consensus size: 24
60059 AATATCAAAA
* * *
60069 ATCAAATCATAATTCACGTCAAGT
1 ATCAGATCATAATCCAAGTCAAGT
* * *
60093 ATCATATCAAAATCCAGGTCAAGT
1 ATCAGATCATAATCCAAGTCAAGT
60117 ATCAGATCATAATCCAAGTCAAGT
1 ATCAGATCATAATCCAAGTCAAGT
* *
60141 ATCAGATCAGAATCCATGTCAAGT
1 ATCAGATCATAATCCAAGTCAAGT
60165 ATCAGATCA
1 ATCAGATCA
60174 GAAATCAAAT
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 72 1.00
ACGTcount: A:0.41, C:0.21, G:0.12, T:0.26
Consensus pattern (24 bp):
ATCAGATCATAATCCAAGTCAAGT
Found at i:60155 original size:48 final size:48
Alignment explanation
Indices: 60069--60173 Score: 156
Period size: 48 Copynumber: 2.2 Consensus size: 48
60059 AATATCAAAA
* * * *
60069 ATCAAATCATAATTCACGTCAAGTATCATATCAAAATCCAGGTCAAGT
1 ATCAGATCATAATCCAAGTCAAGTATCAGATCAAAATCCAGGTCAAGT
* *
60117 ATCAGATCATAATCCAAGTCAAGTATCAGATCAGAATCCATGTCAAGT
1 ATCAGATCATAATCCAAGTCAAGTATCAGATCAAAATCCAGGTCAAGT
60165 ATCAGATCA
1 ATCAGATCA
60174 GAAATCAAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.41, C:0.21, G:0.12, T:0.26
Consensus pattern (48 bp):
ATCAGATCATAATCCAAGTCAAGTATCAGATCAAAATCCAGGTCAAGT
Found at i:60193 original size:48 final size:48
Alignment explanation
Indices: 60093--60193 Score: 123
Period size: 48 Copynumber: 2.1 Consensus size: 48
60083 CACGTCAAGT
* * * **
60093 ATCATATCAAAATCCAGGTCAAGTATCAGATCATAATCCAAGTCAAGT
1 ATCAGATCAAAATCCAGGTCAAGTATCAGATCAAAATCCAAATCAAAA
* *
60141 ATCAGATCAGAATCCATGTCAAGTATCAGATCAGAAAT-CAAATCAAAA
1 ATCAGATCAAAATCCAGGTCAAGTATCAGATCA-AAATCCAAATCAAAA
60189 ATCAG
1 ATCAG
60194 GTAAAATATT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
48 42 0.93
49 3 0.07
ACGTcount: A:0.45, C:0.20, G:0.13, T:0.23
Consensus pattern (48 bp):
ATCAGATCAAAATCCAGGTCAAGTATCAGATCAAAATCCAAATCAAAA
Found at i:64521 original size:2 final size:2
Alignment explanation
Indices: 64514--64541 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
64504 GATCTTTTCA
64514 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64542 TTACCCCCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64750 original size:24 final size:24
Alignment explanation
Indices: 64723--64837 Score: 99
Period size: 24 Copynumber: 4.8 Consensus size: 24
64713 AATTCATGTT
*
64723 AAGTATCATG-CCAAAATCCAGGTC
1 AAGTATCA-GACCAAAATCCAAGTC
* *
64747 AAGTATCAGATCAGAATCCAAGTC
1 AAGTATCAGACCAAAATCCAAGTC
* * *
64771 AAGTATCAGATCAGAATCCATGTC
1 AAGTATCAGACCAAAATCCAAGTC
* * *
64795 -AGATATCAGATCAGAATCCATGTC
1 AAG-TATCAGACCAAAATCCAAGTC
*
64819 AAGTATCAGATCAGAAATC
1 AAGTATCAGACCA-AAATC
64838 AAATCGAAAA
Statistics
Matches: 82, Mismatches: 5, Indels: 7
0.87 0.05 0.07
Matches are distributed among these distances:
23 3 0.04
24 73 0.89
25 6 0.07
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.23
Consensus pattern (24 bp):
AAGTATCAGACCAAAATCCAAGTC
Found at i:64802 original size:48 final size:48
Alignment explanation
Indices: 64737--64834 Score: 162
Period size: 48 Copynumber: 2.0 Consensus size: 48
64727 ATCATGCCAA
64737 AATCCAGGTCAAGTATCAGATCAGAATCCAAGTCAAGTATCAGATCAG
1 AATCCAGGTCAAGTATCAGATCAGAATCCAAGTCAAGTATCAGATCAG
* *
64785 AATCCATGTC-AGATATCAGATCAGAATCCATGTCAAGTATCAGATCAG
1 AATCCAGGTCAAG-TATCAGATCAGAATCCAAGTCAAGTATCAGATCAG
64833 AA
1 AA
64835 ATCAAATCGA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
47 2 0.04
48 45 0.96
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.22
Consensus pattern (48 bp):
AATCCAGGTCAAGTATCAGATCAGAATCCAAGTCAAGTATCAGATCAG
Found at i:64851 original size:48 final size:48
Alignment explanation
Indices: 64751--64851 Score: 134
Period size: 48 Copynumber: 2.1 Consensus size: 48
64741 CAGGTCAAGT
** *
64751 ATCAGATCAGAATCCAAGTCAAGTATCAGATCAGAATCCATGTCAGAT
1 ATCAGATCAGAATCCAAGTCAAGTATCAGATCAGAATCCAAATCAGAA
*
64799 ATCAGATCAGAATCCATGTCAAGTATCAGATCAGAAAT-CAAATC-GAAA
1 ATCAGATCAGAATCCAAGTCAAGTATCAGATCAG-AATCCAAATCAG-AA
64847 ATCAG
1 ATCAG
64852 GTAAAATATT
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
47 1 0.02
48 43 0.91
49 3 0.06
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.22
Consensus pattern (48 bp):
ATCAGATCAGAATCCAAGTCAAGTATCAGATCAGAATCCAAATCAGAA
Done.